mRNA_H-paniculata_contig46729.11644.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig46729.11644.1
Unique NamemRNA_H-paniculata_contig46729.11644.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig46729.11644.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 3.360e-8
Identity = 32/91 (35.16%), Postives = 50/91 (54.95%), Query Frame = 1 
Query:   25 GHVAWTALGEKYLNSSMQRGRLLMRQLDSKVMAPNQDPDEYLTEIFHLRDELEYIGEPFSEGRIMDIILEGLTDDYDQIKFAAERDLDFSL 297
            G   W  L  K+  +   R R L R+L+S  M    DPD ++T ++HL ++L +IG   ++ ++ DIIL+GL  +Y  I  A+   LD  L
Sbjct:  232 GLAVWKELESKFQPADEHRRRNLERELESATMRTGTDPDIFITHVWHLAEQLRFIGGTVTDEKLGDIILQGLPAEYHLISGASGHYLDSEL 322
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig46729.11644.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KY84_9PHAE3.360e-835.16Integrase catalytic domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig46729contigH-paniculata_contig46729:838..1143 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size306
Cds size306
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930392.7582293-CDS-H-paniculata_contig46729:837..11431622930392.7582293-CDS-H-paniculata_contig46729:837..1143Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46729 838..1143 -
1691481271.1033905-CDS-H-paniculata_contig46729:837..11431691481271.1033905-CDS-H-paniculata_contig46729:837..1143Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46729 838..1143 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig46729.11644.1prot_H-paniculata_contig46729.11644.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig46729 838..1143 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig46729.11644.1

>prot_H-paniculata_contig46729.11644.1 ID=prot_H-paniculata_contig46729.11644.1|Name=mRNA_H-paniculata_contig46729.11644.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=102bp
PEAGQLPDGHVAWTALGEKYLNSSMQRGRLLMRQLDSKVMAPNQDPDEYL
TEIFHLRDELEYIGEPFSEGRIMDIILEGLTDDYDQIKFAAERDLDFSLK
DM
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mRNA from alignment at H-paniculata_contig46729:838..1143-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig46729.11644.1 ID=mRNA_H-paniculata_contig46729.11644.1|Name=mRNA_H-paniculata_contig46729.11644.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=306bp|location=Sequence derived from alignment at H-paniculata_contig46729:838..1143- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCGAGGCGGGACAACTGCCCGATGGTCACGTGGCCTGGACAGCATTGGG
CGAGAAATATCTGAACTCGTCCATGCAGCGCGGCCGTCTACTTATGCGCC
AGCTAGACAGCAAGGTCATGGCGCCTAATCAAGACCCTGATGAGTACCTG
ACCGAGATATTCCATCTGCGCGACGAGCTCGAGTACATCGGGGAACCTTT
CTCGGAAGGGCGCATCATGGATATCATTCTTGAAGGGCTCACAGACGATT
ACGACCAGATCAAATTTGCCGCCGAGAGGGACCTCGATTTTTCGCTGAAA
GACATG
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Coding sequence (CDS) from alignment at H-paniculata_contig46729:838..1143-

>mRNA_H-paniculata_contig46729.11644.1 ID=mRNA_H-paniculata_contig46729.11644.1|Name=mRNA_H-paniculata_contig46729.11644.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at H-paniculata_contig46729:838..1143- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCGAGGCGGGACAACTGCCCGATGGTCACGTGGCCTGGACAGCATTGGG
CGAGAAATATCTGAACTCGTCCATGCAGCGCGGCCGTCTACTTATGCGCC
AGCTAGACAGCAAGGTCATGGCGCCTAATCAAGACCCTGATGAGTACCTG
ACCGAGATATTCCATCTGCGCGACGAGCTCGAGTACATCGGGGAACCTTT
CTCGGAAGGGCGCATCATGGATATCATTCTTGAAGGGCTCACAGACGATT
ACGACCAGATCAAATTTGCCGCCGAGAGGGACCTCGATTTTTCGCTGAAA
GACATGCCCGAGGCGGGACAACTGCCCGATGGTCACGTGGCCTGGACAGC
ATTGGGCGAGAAATATCTGAACTCGTCCATGCAGCGCGGCCGTCTACTTA
TGCGCCAGCTAGACAGCAAGGTCATGGCGCCTAATCAAGACCCTGATGAG
TACCTGACCGAGATATTCCATCTGCGCGACGAGCTCGAGTACATCGGGGA
ACCTTTCTCGGAAGGGCGCATCATGGATATCATTCTTGAAGGGCTCACAG
ACGATTACGACCAGATCAAATTTGCCGCCGAGAGGGACCTCGATTTTTCG
CTGAAAGACATG
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