mRNA_H-paniculata_contig4670.11637.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4670.11637.1
Unique NamemRNA_H-paniculata_contig4670.11637.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4670.11637.1 vs. uniprot
Match: D8LH38_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH38_ECTSI)

HSP 1 Score: 129 bits (325), Expect = 7.720e-32
Identity = 75/185 (40.54%), Postives = 94/185 (50.81%), Query Frame = 3 
Query:    3 CARPAQVSYMSQNGRIGRFCSEHRKPEVIVTTSETTCQYEGCTNEPRYGARKGPLSFCSDHKRVGMYTNRNGQLMVATRDGSAFQLRRQFRQKVEAVQG-----TTISDAVIVPETKVENVGVRSPVGGPRQDS---------KPIRVAAADDCP-------NHVARKLCEVPGCEVQPSYGIKG 494
            C   A V YM ++GRI RFC+ H++P V+V      CQ+  C   PRYG   GPL+FC  HKR GMYT R+G L VATRDGSAF  R+        V G     T  +DA  +     E     +P  GP+ D+          P + A   + P         + RKLCEVPGC VQPS+G  G
Sbjct:   47 CTEEADVHYMGRDGRIHRFCTRHKEP-VVVLEQAVQCQHGECDGTPRYGGHDGPLTFCRAHKRAGMYTTRDGVLYVATRDGSAF--RKDPGPPRATVNGDREGATAAADAAAITTGGPETATPATPSRGPKTDAXXXXAPTVLSPSQAAEEVNTPPPGSKKGQTLHRKLCEVPGCNVQPSFGAPG 228
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BLAST of mRNA_H-paniculata_contig4670.11637.1 vs. uniprot
Match: A0A6H5KF29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF29_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 7.150e-23
Identity = 72/209 (34.45%), Postives = 91/209 (43.54%), Query Frame = 3 
Query:    3 CARPAQVSYMSQNGRIGRFCSEHRKPEVIVTTSETT-----CQYEG------CTNEPRYGARKGPLSFCSDHKRVGMYTNRNGQLMVATRDGSAFQLRRQFRQKVEAVQG-----TTISDAVIV----PETKVENVG-------------------------VRSPVGGPRQDSKPIRVAAADDCPNHVARKLCEVPGCEVQPSYGIKG 494
            C   A V YM ++GRI RFC+ H++P V++  +        C ++G      C   PRYG   GPL+FC  HKR GMYT R+G L VATRDG AF  R+        V G     TT +DA       PET                               V +P  G ++                + RKLCEVPGC VQPS+G  G
Sbjct:   77 CNGEADVHYMGRDGRIHRFCARHKEPVVVLEQAVQCEVFHCCGFDGKDMHGECDGTPRYGGHDGPLTFCRAHKRAGMYTTRDGMLYVATRDGIAF--RKDPGPPRATVNGDREGVTTTADAAATTTNGPETAXPXXXXXXXXXXXXXXXXXXXXXXXXXXEEVNTPPPGSKKGPT-------------LHRKLCEVPGCNVQPSFGAPG 270
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BLAST of mRNA_H-paniculata_contig4670.11637.1 vs. uniprot
Match: D7G084_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G084_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 1.820e-20
Identity = 53/163 (32.52%), Postives = 83/163 (50.92%), Query Frame = 3 
Query:    3 CARPAQVSYMSQNGR-IGRFCSEHRKPEVIVTTSETTCQYEGCTNEPRYGARKGPLSFCSDHKRVGMYTNRNGQLMVATRDGSAFQLRRQFRQKVEAVQGTTISDAVIVPETKVENVGVRSPVGGPRQDSKPIRVAAADDCPNHVARKLCEVPGCEVQPSYGI 488
            C R  + S + Q+G  I    +E +KP V   T    C++ GCT  PRYG + GPL+ C  HKR G+YT R+G L+VATRDGSAF+ +      V + +  T + A    + +  +  ++   G P         +  +     +  + C  PGC+++P YG+
Sbjct:  149 CERGVEESRLPQDGGVISPPRTEDKKPAVASRTEY--CKHTGCTRTPRYGRKNGPLTLCQSHKRAGLYTVRDGVLLVATRDGSAFREKAGSSSSVNSNKNGTATGAAARRKCEAPDCTIQPSYGDPGTSRPRFCSSHKEKQMVSLKNRPCLFPGCDIRPHYGL 309
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BLAST of mRNA_H-paniculata_contig4670.11637.1 vs. uniprot
Match: A0A6H5KL62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL62_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 7.380e-11
Identity = 34/83 (40.96%), Postives = 47/83 (56.63%), Query Frame = 3 
Query:    3 CARPAQVSYMSQNGRIGRFCSEHRKPEVIVTTSETT-CQYEGCTNEPRYGARKGPLSFCSDHKRVGMYTNRNGQLMVATRDGS 248
            C R  + + + Q+G  G       + + +  TS T  C++ GC    RYG + GPL  C  HKR G+YT R+G L+VATRDGS
Sbjct:  142 CERGVEENRLVQDG--GVISPPRTEDKKLAVTSRTEYCKHAGCFRALRYGRKNGPLMLCQSHKRAGLYTVRDGVLLVATRDGS 222
[Close]
BLAST of mRNA_H-paniculata_contig4670.11637.1 vs. uniprot
Match: D7G079_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G079_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 1.720e-8
Identity = 40/102 (39.22%), Postives = 55/102 (53.92%), Query Frame = 3 
Query:  198 MYTNRNGQLMVATRDGSAFQLRRQFRQKV---EAVQGTTISDAVIVPETKVENVGVRSPVGGPRQDSKPIRVAAADDCPNHVARKLCEVPGCEVQPSYGIKG 494
            MYT+R+G+L++ATRDGSA  +R+    +    +A+    ++     PE      G   P  GPR D   +RV         + RKLCEV GC VQPSYG+ G
Sbjct:    1 MYTSRDGKLLMATRDGSA--IRKAAAPRAVGPKAIPSKKVAKRAPKPE------GAADPSAGPRPD---LRVQT-------MYRKLCEVEGCLVQPSYGLSG 84
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4670.11637.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LH38_ECTSI7.720e-3240.54EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5KF29_9PHAE7.150e-2334.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G084_ECTSI1.820e-2032.52Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5KL62_9PHAE7.380e-1140.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G079_ECTSI1.720e-839.22EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4670contigH-paniculata_contig4670:2619..6115 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size500
Cds size471
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4670.11637.1prot_H-paniculata_contig4670.11637.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4670 2619..6086 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930392.2757893-CDS-H-paniculata_contig4670:2618..26891622930392.2757893-CDS-H-paniculata_contig4670:2618..2689Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4670 2619..2689 -
1691481270.8927245-CDS-H-paniculata_contig4670:2618..26891691481270.8927245-CDS-H-paniculata_contig4670:2618..2689Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4670 2619..2689 -
1622930392.2879024-CDS-H-paniculata_contig4670:3237..34171622930392.2879024-CDS-H-paniculata_contig4670:3237..3417Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4670 3238..3417 -
1691481270.9023883-CDS-H-paniculata_contig4670:3237..34171691481270.9023883-CDS-H-paniculata_contig4670:3237..3417Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4670 3238..3417 -
1622930392.302771-CDS-H-paniculata_contig4670:5387..55201622930392.302771-CDS-H-paniculata_contig4670:5387..5520Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4670 5388..5520 -
1691481270.9131503-CDS-H-paniculata_contig4670:5387..55201691481270.9131503-CDS-H-paniculata_contig4670:5387..5520Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4670 5388..5520 -
1622930392.3179026-CDS-H-paniculata_contig4670:5999..60861622930392.3179026-CDS-H-paniculata_contig4670:5999..6086Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4670 6000..6086 -
1691481270.9278293-CDS-H-paniculata_contig4670:5999..60861691481270.9278293-CDS-H-paniculata_contig4670:5999..6086Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4670 6000..6086 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930392.3315303-UTR-H-paniculata_contig4670:6086..61151622930392.3315303-UTR-H-paniculata_contig4670:6086..6115Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4670 6087..6115 -
1691481270.9411561-UTR-H-paniculata_contig4670:6086..61151691481270.9411561-UTR-H-paniculata_contig4670:6086..6115Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4670 6087..6115 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4670.11637.1

>prot_H-paniculata_contig4670.11637.1 ID=prot_H-paniculata_contig4670.11637.1|Name=mRNA_H-paniculata_contig4670.11637.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=157bp
MSQNGRIGRFCSEHRKPEVIVTTSETTCQYEGCTNEPRYGARKGPLSFCS
DHKRVGMYTNRNGQLMVATRDGSAFQLRRQFRQKVEAVQGTTISDAVIVP
ETKVENVGVRSPVGGPRQDSKPIRVAAADDCPNHVARKLCEVPGCEVQPS
YGIKGE*
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mRNA from alignment at H-paniculata_contig4670:2619..6115-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4670.11637.1 ID=mRNA_H-paniculata_contig4670.11637.1|Name=mRNA_H-paniculata_contig4670.11637.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3497bp|location=Sequence derived from alignment at H-paniculata_contig4670:2619..6115- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTGTGCCCGCCCAGCGCAAGTAAGCTACATGTCCCAGAATGGCAGAATA
GGTCGCTTTTGCTCGGAACACAGGAAGCCAGAGGTCATCGTCACCACTAG
TGAGACAACTTGCCAGGTGAGTAATGGGTTACATAAAATCACGAAATTAA
TATCGTATCCATGGTGTGTCAGTACATCGCCTTGCTTGTAACCTGCAAGC
AGTGTGCACGTCATAGCACGTCTCATCGGGAAGATACCAAGCAACCCTAT
CTCAAGGTGTCAAATCTGGGGCTGCTTTGGCGATAGGGGTGGAGATGCGA
CGATTGTATCGACTCCATTACTCATATCAAGCGCTAGCCCCCACCAACTC
GTGGTTGCAAAGTCATGATACTTTGGTGCCGCAGCGCTTCACACGAGTGT
ATACTCGTTCGTAGCACTGCTTATTGAGACGAGGTTCTCACTACAGCCGA
GCCGTCGCCAGATGCTCAGGAGTAGCGTGAGTGTAACAACTTAGATGTGG
TACATCCAATCCTGCGACTGTTCAGCACTCGGCCTGTTCGCACAACCGCA
ATTATAGAAACGCTCGTTGACTGCATGCACACATGCTTGCTGCAGTATGA
GGGATGCACCAATGAGCCAAGATACGGTGCGAGGAAGGGGCCATTGAGTT
TCTGCAGCGATCACAAGCGGGTAGGCATGTATACTAACCGCAACGGACAG
CTGATGGTTGCTACTCGTGATGGCAGTGGTGAGTCCGGGAATTTCTTATA
TCCAGTATGCACGTTTGTTATTTTCCTTGTGTTGGGCCCTGCATTTCAGT
ACAGCTTTCAACAACCAGAAAAACGTTATATCTTCAATGTTATGGTGGAT
TAGTGTTTTCTGCTACAAACCTGCCAAGAGTGTGTTGTGTTGTGTGAGGG
AACCCCTCAACGCCCCAGAGATGCCCTCGCTTAGTTTTTGATATGGGTGG
TGAATGCTTCCGATCATCCGTTATCAATATCGCGTATCTGAACGCATCTC
GAAAACGGATGGATTGTTTTGGTACGAGTGCCGTAATCGACTGTACTATC
GACATTTGTGTGGGTGAATAACTGCAGTCCTTCTCAGTTGAGGGTGTTTG
TGCGTGACCGAACAACTGAAGCGGGACTCCGCTGAATTATTTATGTGCGG
CTGAACACCCGCAACAGCGCTCCTATTAGAGCACTTCTACGTGAAATGAC
TAACTGCAAATGGCTCCGTAGTGGGTCATTCGTCTGGATGAATACAATTG
CAAATGGATCCTTTGTGGGGCGTCTCTATGGTTGAATACGTAGAAATGGA
TTTTTTATGAGGTATATGAGTTGATCAGGGAGGGGTATTCTTCGTATTGC
GCGGTATTTTTTAGGAAATCTGTAAAACCTCCCTCGAAAGGGGCAGGCAC
CATTAGGAAGAAATTGGTTCTAGAAGCACCACGATAAAGCCATACTCCGT
GGGAACAACATCTTGGCGTTAGTTTTTCCAAATTCCAAGTGAATACACTG
CTATTCCCACGGTAATTTTTCACATTATTCAGAAATCGGTTTACCGCGGT
AAAGTACCGTGCACGGTATTTTGAGGATAGTACGATTGGCACTTGAACTT
CGCAAAATGATGACGAGAGATCGTTTCCACAGAGTGGATCTTTATCGCGA
TACTTTTAGAACCATATTTTTCTCAGTGGTACTCCTTTCGTACCCCGTTG
CACAAGTTCCGAAAAGTGTACCGTGCAATACCGAGGACACCCCTGGAATC
GATAAACTGACTGCAAGTGCCCTCCTCCTGGAAGTGGTTTTTGCAGCTTA
TTCATATTTAATATTTACGCAGGCGAATGAATACAGCTCTCTGAGGTTTT
GAATGGTTCATTCGAATTTGTTCGAGGGGTGAAATATTTTAAGTATTTCG
ACATGCCAGTCATTCAAAGCACTTTTTTAAAGTGTATATGATGTGCTGCT
GGGTAGATCCGTGGTATCCGTTGGTGCGTCGAGTGGTGTAATATGAACTT
TACTCAGGCTGCTGTATGGCATATGATGTTCTTGATGTTGGTTTGAGCGG
ACGATAGTCAACTTACTAGGTAAATACATTGCTCGCGAAGATGACACACA
TAAGCACCAAGTCAAACCCTGTATTCATCTGTAATATAGGTGGTGGATGA
CATCGCACGATGTTGAGCGGTATGGGTACCACTCTTGTTCATGTACACAC
CTCGGCCACGCGGTTTTTAATTCCTCATAATTAGCGGTAGCTAATCGCTA
GTCACTGCTATGATTACTGCGACCAGCGCTGCTTCGATTTTCCTCTGGAG
GATGACCCTTCTCCCCATTTACTTGTACGCCTAATTTATCGACCAAGACG
ATCAAAATTCTGTACGTGCTGGAGAGGAAGGCCTCCGAGAGATCATTTTC
ATCGGTTATGTTCGGAAAATGCGCTTTCGTGTATGTTGCGATACAAGCGG
GCTCTCCCGTCAGTCTTGTATCTCGATTGTAAGCACGGTCGCTGACCAGC
TGCCGTGCAGCGGGAAACGATCTTCCGGTCTCATTTTCGTATCCCCGGTG
TCTTGCCAAACCACGACTCGGCCAACTTTGTGTTTCAATGGTGTAGGTTG
GATTCCTAGAGTCTATTTGCATGGCTTTGCTCTTTGAAGTTTTCGACCGT
AAACATTAAAATTTCCTCCCGCATGCATGTGACTTCCGTGCCGACCAGCG
TTCCAGCTGCGGCGTCAATTCAGGCAAAAGGTTGAAGCGGTGCAAGGGAC
CACGATAAGCGACGCCGTCATTGTACCTGAGACCAAAGTCGAAAATGTTG
GTGTTCGCTCGCCCGTGGGTGGACCTCGTCAAGACTCGAAACCGATCCGT
GTCGCTGCCGCTGATGACTGCCCCAATCGTGAGTACGAAGTTATGCGGGG
GGCAGTGTGATCATGCGCGATTATTGATGGGCCAGTTGTTAGGCTTGCTC
CGGGATCAGGTGGTGGTTGCATATGAACCAAGTTCTTGGGGATATGAGAG
TACTCTTGGGCGGAAAAATGCCCGCTTGTTCACCGACTTTCTCCATCTGA
GGAAGCCGACTCCGAGTTCGTTTGGTTTAGAAGTCACCCACCGATGTTTG
CAGTCCTCGCTTTTACGCAAGACCAGGGAGGAGGTAGTCATCCCCGAGGA
GGTGTTCGCTCGCTCTACTACCGTGGTATATGAAAAGGGGACGGGGATGC
TACCTTTGTTTAATGAAATCACGTCCACGATAGGTCTGCACTCGAACTTT
GGGCACGAAGCAGTTGATTCGGAGTCTGTAATACTCGGATGATCGTCTAT
GGACACATGATTCGTGGCGCTACCGAGGTTTATCCTGGTAATCTGAAAAT
TCTCGCACCTCCAGCTGGATTGTATCCTCTAATTTGTTACCTTCCTCCTG
TCGTTGTGCACCTGATTTCACCTCAGATGTGGCCCGAAAACTGTGCGAGG
TGCCCGGCTGCGAAGTCCAACCAAGCTACGGTATAAAGGGTGAGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig4670:2619..6115-

>mRNA_H-paniculata_contig4670.11637.1 ID=mRNA_H-paniculata_contig4670.11637.1|Name=mRNA_H-paniculata_contig4670.11637.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=942bp|location=Sequence derived from alignment at H-paniculata_contig4670:2619..6115- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCCCAGAATGGCAGAATAGGTCGCTTTTGCTCGGAACACAGGAAGCC
AGAGGTCATCGTCACCACTAGTGAGACAACTTGCCAGATGTCCCAGAATG
GCAGAATAGGTCGCTTTTGCTCGGAACACAGGAAGCCAGAGGTCATCGTC
ACCACTAGTGAGACAACTTGCCAGTATGAGGGATGCACCAATGAGCCAAG
ATACGGTGCGAGGAAGGGGCCATTGAGTTTCTGCAGCGATCACAAGCGGG
TAGGCATGTATACTAACCGCAACGGACAGCTGATGGTTGCTACTCGTGAT
GGCAGTGTATGAGGGATGCACCAATGAGCCAAGATACGGTGCGAGGAAGG
GGCCATTGAGTTTCTGCAGCGATCACAAGCGGGTAGGCATGTATACTAAC
CGCAACGGACAGCTGATGGTTGCTACTCGTGATGGCAGTGCGTTCCAGCT
GCGGCGTCAATTCAGGCAAAAGGTTGAAGCGGTGCAAGGGACCACGATAA
GCGACGCCGTCATTGTACCTGAGACCAAAGTCGAAAATGTTGGTGTTCGC
TCGCCCGTGGGTGGACCTCGTCAAGACTCGAAACCGATCCGTGTCGCTGC
CGCTGATGACTGCCCCAATCCGTTCCAGCTGCGGCGTCAATTCAGGCAAA
AGGTTGAAGCGGTGCAAGGGACCACGATAAGCGACGCCGTCATTGTACCT
GAGACCAAAGTCGAAAATGTTGGTGTTCGCTCGCCCGTGGGTGGACCTCG
TCAAGACTCGAAACCGATCCGTGTCGCTGCCGCTGATGACTGCCCCAATC
ATGTGGCCCGAAAACTGTGCGAGGTGCCCGGCTGCGAAGTCCAACCAAGC
TACGGTATAAAGGGTGAGTAGATGTGGCCCGAAAACTGTGCGAGGTGCCC
GGCTGCGAAGTCCAACCAAGCTACGGTATAAAGGGTGAGTAG
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