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Homology
BLAST of mRNA_H-paniculata_contig4666.11628.1 vs. uniprot
Match: A0A6H5JYV1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYV1_9PHAE) HSP 1 Score: 153 bits (387), Expect = 2.000e-40 Identity = 78/122 (63.93%), Postives = 97/122 (79.51%), Query Frame = 1
Query: 37 VSAMIREFPQILEVKTKRLKAVVKYLWKVLEIPKSGVAVLLSQHPRVCALEAEANVAPLRFFFERQLHVQDTARIGRLVYKFPRLLLMDVNAHLIPRADDFRKSMGLEGLEPLSPKVRNRPK 402
+ A++R+ LE++ K V+ L VLEIP+SG+AVLLSQHPR C LEAEAN+APLR FFER+L V+DT+RIG LVYKFPRLL DV+ L+PRA++FRK+MGLEGLEPL P+VR RPK
Sbjct: 447 LKAVVRKKGTELELQAFESKEVLGTLSSVLEIPRSGIAVLLSQHPRACCLEAEANLAPLRQFFERELFVEDTSRIGHLVYKFPRLLFQDVDTQLVPRAEEFRKAMGLEGLEPLPPRVRLRPK 568
BLAST of mRNA_H-paniculata_contig4666.11628.1 vs. uniprot
Match: D7FVI5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVI5_ECTSI) HSP 1 Score: 124 bits (311), Expect = 4.050e-30 Identity = 59/82 (71.95%), Postives = 70/82 (85.37%), Query Frame = 1
Query: 1 FYRKEIGLQAYMVSAMIREFPQILEVKTKRLKAVVKYLWKVLEIPKSGVAVLLSQHPRVCALEAEANVAPLRFFFERQLHVQ 246
+ R E+GLQ VS M+REFPQ+LEV+ KRLKAVV+Y WKVLEIP+SG+AVLLSQHPR C LEAEAN+APLR FFER+L V+
Sbjct: 392 YLRTEVGLQPLTVSGMVREFPQVLEVRPKRLKAVVRYFWKVLEIPRSGIAVLLSQHPRTCCLEAEANLAPLRQFFERELFVE 473
BLAST of mRNA_H-paniculata_contig4666.11628.1 vs. uniprot
Match: A0A835YN67_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN67_9STRA) HSP 1 Score: 71.2 bits (173), Expect = 2.690e-11 Identity = 34/79 (43.04%), Postives = 49/79 (62.03%), Query Frame = 1
Query: 121 VLEIPKSGVAVLLSQHPRVCALEAEANVAPLRFFFERQLHVQDTARIGRLVYKFPRLLLMDVNAHLIPRADDFRKSMGL 357
VL++ L+ HPR+ +EAE ++APLR FFE L + DT RIG +V K P++L MD+ L P+A D R +G+
Sbjct: 311 VLKLEPEVATRLVCSHPRLLGMEAEKDLAPLRHFFEYDLCITDTRRIGSIVAKLPQILFMDLETELRPKAADIRAKLGI 389
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Model size | 525 |
| Cds size | 525 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4666.11628.1 >prot_H-paniculata_contig4666.11628.1 ID=prot_H-paniculata_contig4666.11628.1|Name=mRNA_H-paniculata_contig4666.11628.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=175bp
FYRKEIGLQAYMVSAMIREFPQILEVKTKRLKAVVKYLWKVLEIPKSGVA VLLSQHPRVCALEAEANVAPLRFFFERQLHVQDTARIGRLVYKFPRLLLM DVNAHLIPRADDFRKSMGLEGLEPLSPKVRNRPKHHYHPRESREEPSNYR GRGRGGGGGGGRSRGTPTNGRGEGG back to topmRNA from alignment at H-paniculata_contig4666:8765..15110- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig4666.11628.1 ID=mRNA_H-paniculata_contig4666.11628.1|Name=mRNA_H-paniculata_contig4666.11628.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6346bp|location=Sequence derived from alignment at H-paniculata_contig4666:8765..15110- (Halopteris paniculata Hal_grac_a_UBK monoicous) TTCTACAGAAAGGAGATTGGACTGCAAGCCTACATGGTTAGCGCAATGAT
CCGGGAATTCCCGCAGATATTGGAAGTGAAGACAAAACGACTTAAGGCCG
TCGTCAAGTACCTCTGGAAGGTATTGCCACAAACGCTGTAGTCAGGCCAA
AGCTGTTCCTGCGTCACACCACTCCTAGCGAAAGTCATTGTATTTATTTT
CATGTATAAGACCATTGCAGTATCTAGATGTGCATGCGATTGTACGCAAT
CCATTAATTCGGAACTTTGTGGTGGAATTCGCCGGCTAACTGGTGAAGTG
TCGATTTTAGTTGTCGTGAGTGGACGATAATCTGATGGAGTTTGCGATGG
GATTGTGCTTCCTTGCTAAAACTAAATACAGTACTTTACACGGTATTGCA
CCCTCTATCGGATATCGTTTGAGCATTATAACCGGAGATGGTAGTGTGTG
TGTGTGTGTGTGTGTGTGTTGGGGGCTCCAACACTAGTGAATACATGTGC
AGTAGTTTTACTAAATGAATTTGTATTTCATGCTGGAATCATGCAGCCCA
TCATCGCGGTTATATAATCTCGTCAGTAATTCGACATTTATAAGGGGAGA
GTGCTATTCGTCGGCATGCATATATTTTTTGTAAACCACGGTACCTGGAC
TGGACTGTAGCATTGCTCTATGGAACCGTGTCGAGTGGGGAAACATGGTG
CACATGGAAGGTACGGTTGAGTCGGCTTTTTTGGTAATATTACTAGAACT
TGGCACGTTGCTTGACGTCACTTTTGTTCGACCTTGACTGTCTGTACCAC
ATCCCGTTTTTTGCTCTGCTTTCGTTACTCTTCTGTTCTCTAATGTGCTG
TATCCGGAATAATGTCGTGGTCGACGTGGCTCTGGTTATTAACTGTTCGT
TTTCCGTGCCGCGCCACGTTCATCGACTTTGGCTTTGCTGCGTGTGATCT
TTCCCGTGGAACCGTGCTTGCGTCCGCTTTTGCTGTGCCTCTCGTGTAGT
GATGGCACTTGCGAATCAAAAGCAAACGGTACACTTGAAACAATTCGGCG
ATCTTTTTGTTCGGTCTCCAAGAGAGTAATTTGCCTCCAGCGCTCTAAGG
GTATATCGGGCTAAAGCTAGTCTTGCTCAGAATCTTTTTCCCGTATGGAC
GCGTTCCGTGAAGTTCGGCCACATTACGCATATTTTGGGACTGACTCCCC
ACCGCCCAGGCCTGTTTTGCTCTCTATTTTGTCTGCCTAGCTGTGTGTCT
GTTTGCATGTCTGCATGTCTATCTCTGTCGACACGACTCAGCGTCTGTGT
TCTGTAACTGCCCACTCTCCCTCCCCGCTCGGCACGCCTCTCTCTTTCTG
TAACCCTATATTTGAACGTAATTCGTATGTTTCAGGTTTTGGAGATTCCA
AAGAGCGGCGTGGCGGTGCTTCTCAGCCAGCATCCGAGGGTGTGTGCTCT
TGAAGCCGAGGCCAACGTAGCTCCCCTTCGCTTTTTCTTTGAGAGGCAGC
TTCATGTCCAGGTTGGTCACTTGTGTATGCTGTGCACCTTCCGTACTATG
TGCGTAATGTAAGTCATCCGATAGTACAAGCGAGCTCCTCGATCTTGGTA
TCCAGGAGTTCTTCTGATTTTGTAAATCAACATCTTGTACCCTGAGCAAA
CGGTCCTCGATCTCCTCCTTTTTCGTGACACTCCGGCCATTAGTCCACCC
GACAAACGCATTTGGGTCTACCGTACCGTAGAGGTCTGATGGATCGAATT
TGCTTTGTTGCGTGGTCTGATGGTTGTAGTATCGTGAAGGAGGAGCGGTC
GGGGACCGCTTGCTCAGGGTAGAGCAAGGAAGCACTTTCCCTTAAAAGAG
CGGTGATGGGGCAAAATTTTTACCTTAGTTTGAAATGAAGGAGTGCTGTA
CGATGAGTAGCAAGGTGACTAGAGATGAAAGTATAGTAAAAAATCTTGAT
CCAATCCTTTATCAAATGGAACCCGAGAATAACGCAATTTTTTATTTACG
ACTGATTCTTTAGTGCAGCCGTGGAGGCCAACTCCTCGATATTGTGACTT
GGTGGCTCGTTCAAATAGTTGATATGACGAGTTTTTGTTTTTCGCCTGTT
ATAATGGAAAATGCAACGTTGATATGTGTTTTTTTTTTATTCGTTTTTTT
GCTGCTCATGCTACGATGTAGCGCATCTAGGAAGTCTGTCGTGTAGTGTC
GTTGTGAACGGTGATGAGTGTAGATGTACAGCACAGTTCGACGGAGAAGT
AGCCATCCCCGTATTCACGTGGCGAGAAACATTGGCCGAGGGGATCAACA
ACACTTTTGAACCCTGTTCACCATTTATGCGAAACAGAAGAAGAAAAAAC
GACGTCTTTTCATATGGCCGGCAGAATCTCACATGATTATCGGCAAACGG
GAAAATCTCACATAAACATCCGCAAACCGGGCAGCAATACAAAAAATCCC
AGACCACTACCTGCCCTCTAATCTGGCAAATTCTCACATACATGACCATC
CGCGAACCGGTTCATGACATGAGCATTTGAAAAAGACATGTATAGAATGA
ATACCCTGTCTGGGGAAGATCCTTGAATAAAACGCCTGTGACTTGATTAC
GGGGATGGGGAGAAGCCGCTGTCCCGACGGCCGGTGCAGGCAGTGCTTCA
GTGCTCACAGTACGGGCAATTAGTCCTACACGGTTCTACGAACAACTGAT
GCAGCACTCGCTATCTGTTGGCACGTTCATCTTTTGTTCTGAAACACCTT
CGGGGCTCAAGAGGTGTAATGAATATGGACGATTCGTTTCGAGATATCAT
TTTTTTCAGTGGGTGAGGGTCTTAGTCTGGCTCAACTTCAATACACTCCT
TCTGCGTATGATCCGTGTGCGCACTATGCCTTGAGGGTATACGCTGATGA
TAACTCTAACAATGACAGATGGTTACAGGTTGGGTGAGAACTGATATATG
GAAGCTTTCGGGTGGAAGTGTCAACAGGCTGCAAGGGTCTTTACGTTGGT
CTACTCCCATGAACCTTCAATTGATTTTGTTTTTTTCCGGCTTTTTCCCC
GCGAACAGGACACCGCTCGCATTGGCCGGCTAGTTTACAAGTTTCCTCGC
CTCTTGTTGATGGATGTCAACGCGCACCTCATTCCCAGAGCGGACGACTT
CCGAAAGGTGGGCCTGGCGCGTATGCTGCGTGGTAGACCGTATACACAAA
CTCCTTAGTTCTCGTTTCGACATTGCTTATTTTCTGTATGGGAACTTCTT
ATTCTCTGACAGCAGAGCAGGTCAGAGTGATCAAACTAGTGTCTTGGAAA
ATGAAGAAAAATCACATACACGATCATACACAAGGGTGGTGTGGGAATGC
CTGCCTCCCTCGACCAGCTGTCGCATCATGCGGATCATCTCCCAATCAAT
CGACCACGTTGATTTATCAGTCCGCTCAGTGATCAAGGAGGGGTCGGAAG
CTAAGCTAGCCCCGGAAAATTCCTGAAGGGGAGGGCGAAACGTATTTCCT
TCCCTGCCCCTTCCTACCGCGGACGCGTGGTCAAAGGTCGAACAACTGCG
ATATGCGAATGATGAGACTCCCCCCCCTTTGATTGTGGCCAGCTTGTGGA
TACGTGATACAGCATCTTGAAGATGCTACAGCATGCCTCCATATTATTTG
TCATCTCCTACTTTTGATTCTCTGTAACTCTACCGTACTTTTTCCTAACC
GTGTTTCTATGGTAGTGTAGATGTTGACCTCCCCCTCCCCGCTCTGGACA
GTATCCACTGTTCCCTATCCAACGGTATTAGACAACGCGTTGTCGGGTGT
TATACCAGATAGTGGAGCCGGTGGAACGTACACTTACCGGGGTGCGTTCT
ATAGAATGCGCTCAACAACTGGCCCAATTTGAGTTTCGTCGATCGCTGAG
CGAGTAGTATCTTGGTTTCGCTAGCCCTTTCGGGACCGCTCTTCCGAAGT
ACTAGTGATATCATTTCAAAACAACCATTTGGGAAGAGTGACTACTATGG
TGAGAACATATAAGGAATCACGAGATTTCGCAACCAACGTTTTTTTTTCG
AAGAGCTCTGCAGGACTAGTTAGACAATCCCGTTGCCTGATTGGTGGAGT
TTACGTTGGCCGCATGACACTATCCCATGTTATAGAATGAATGCGATAAT
CGCCATTGTAAGACGCCCGTCGGTTTTTCCAGTTGTGCTCATGAATATTC
ATAGCCCCGTATTTGTAGCCTAAATAACCTCTGCATAAATATGTACTAAA
GATATTAATAATAAGTCGACTCTGAGAACGAAAGAAGTGGGTACACCGTT
CCGTATGGGGTTCGTAAGTCATATGTGTATCTATGTGAGGTAATGATAAT
GGTTGCTGGCAGCAACGGCGAATTTTACAGTTATCCAAAATGTTGAATAG
TGGTGCACTAGCCCAGGTTACGGCTCACATCAAGCAACAAGCAGCACGGT
AAATCCTGTTCGTTATCGATGAGAACGGCTTGCCCGGGTTTGGTGACTTT
GGCGGACCAGCATAGCGCAGCTTATCGGAGATGGCAAACTCCAGAAACAC
AAAGGAAAAGAATTGCGGCATCAAACACCGCGAAAACAAGAAAAAAAAGT
GCTGAAGCGGCTGCGGCTTGCATAGAGAACATGGGGTATTACCATTGGTT
AACCCGCCAGCCTGGCCCGTCAGCGACAAGCAATGGGGCGAGATGGATTC
CTTGCGGCGGAACGAGCCGTTGAATCCGCGACCGTACGAATGAACAGCGC
CCATGCCGAAAGGAGCTGTAAAAGAAGTCGCGTGGCAGGTTCTCTAGATT
TTATTTTGCAAAGCAAACGAAGCTAGAACTAAAGAGGGCAACCCATAAAG
CAACAGCGGCGATTAAGCAGGCCCAAGGTGATTGCTGTTAGAGCCATGCC
CCTCTGATGCGTGTCATGTATACCGTTCCTGTGTACCGCAGCGGCGGTCT
ACAAGCGTAGGTTGTGGTGTGTATTCGTGCAGTATCATTGATTGAAATGT
CTGTTTGACAATGCATTGGTTCTTCTGGGCTGGTGTCGGGACCGAAACGT
TTCTTCCCTGTCGTATTCTGATTGGATCATATGAATGTGTCGATGGAGCT
GCCAAAACATTGTGGGAAAGGAATACGGTCTCTACAGATAAGCAATGCGA
CTCCTGCATGGTATAATGTGCAGTATTGGTAGTTTTTTTTCGCCGGAAAA
ACAGCATTTCCTTGGTTCAATGATCGTCTTGGCCTTGATAATTAGCGTCG
TCGCGATCTAAGTCCTGTCGCTCAAGTTATGTTCTAATACTATTCGTTGA
AATGCAAGACCAGGCGATAGTACATCGGGCTCCGCGTATTCATTCTTCAT
TTTTTACATGATATATGCAGAGGTACAACCGAAGTATAACGTTCGTGAAT
TAAAACACATCAGAAAGTCTTTTTTCTACGCGCAGCACTGCAGGGCAGGC
GGCCGTTCAAGCTCGTATAATTATGGTAAGGCTATTCACTATGCAATCTA
GGTTCAGATGAAATACCTCCTCCTCCCTCCATCGCGTTATCGCCCCCCAC
CGCGTTACCGTCCTCCACCGCGCTACGGCCTCCTTTCCCACCAAGAGGGG
AGTTGTGTAAGAAGTCAAAGCTGGATGCTCAGCGTGAACGTGTTAGTACT
AAGTCACAGATGAGAAGATATTTGTAAATAATCAGGTTTAGATGCGTTTA
TTGTTTGGGCAAAGCGAAAGGGAGCACTGTTTACTCGTTCTTAAATGATA
TTTCATGTTTTTTCCATCATACGTTTATGTAATCTCAGACCCGTTTGTGA
GGGATGAAGAAAACAAATACTGATTGGAAAAACAAATCCTCAGGAAATCG
TTAAAAAGGAGCAGAAAAAAGTGCGATTGTTCGGGCTTAACTCCTTGTAG
AATTCAAATCTCTCGCTTGATTTGTTGCAAAGTTATTTCTTAGCAGGCCG
TTACTGCAAGCCGTCTGTTTTCGACTAAAATCAATTCCTCGCTTAAGGTT
ATCAAAAGGACTCATCCCTTGAGCAATTACTCAAGATCTTTATTTTCACT
GCTTACAGTCGTGCTTCGTTGCAGTGTTCATCCCATGGTGTAAGCACTAT
CGCATTTGGCGCCTGCTCTCCCTCCCCCACCCCCCGTCCTTTACACCCCC
CCCCCCCAACGTGCAGTCGATGGGGCTTGAAGGCTTAGAACCGTTGTCTC
CGAAGGTGCGCAATAGGCCCAAACATCACTATCATCCACGGGAATCTCGC
GAGGAGCCTAGTAATTATAGAGGAAGGGGTAGAGGGGGTGGGGGAGGTGG
GGGTCGAAGTCGGGGTACCCCGACAAACGGTCGGGGGGAGGGAGGG back to topCoding sequence (CDS) from alignment at H-paniculata_contig4666:8765..15110- >mRNA_H-paniculata_contig4666.11628.1 ID=mRNA_H-paniculata_contig4666.11628.1|Name=mRNA_H-paniculata_contig4666.11628.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1050bp|location=Sequence derived from alignment at H-paniculata_contig4666:8765..15110- (Halopteris paniculata Hal_grac_a_UBK monoicous) TTCTACAGAAAGGAGATTGGACTGCAAGCCTACATGGTTAGCGCAATGAT CCGGGAATTCCCGCAGATATTGGAAGTGAAGACAAAACGACTTAAGGCCG TCGTCAAGTACCTCTGGAAGTTCTACAGAAAGGAGATTGGACTGCAAGCC TACATGGTTAGCGCAATGATCCGGGAATTCCCGCAGATATTGGAAGTGAA GACAAAACGACTTAAGGCCGTCGTCAAGTACCTCTGGAAGGTTTTGGAGA TTCCAAAGAGCGGCGTGGCGGTGCTTCTCAGCCAGCATCCGAGGGTGTGT GCTCTTGAAGCCGAGGCCAACGTAGCTCCCCTTCGCTTTTTCTTTGAGAG GCAGCTTCATGTCCAGGTTTTGGAGATTCCAAAGAGCGGCGTGGCGGTGC TTCTCAGCCAGCATCCGAGGGTGTGTGCTCTTGAAGCCGAGGCCAACGTA GCTCCCCTTCGCTTTTTCTTTGAGAGGCAGCTTCATGTCCAGGACACCGC TCGCATTGGCCGGCTAGTTTACAAGTTTCCTCGCCTCTTGTTGATGGATG TCAACGCGCACCTCATTCCCAGAGCGGACGACTTCCGAAAGGACACCGCT CGCATTGGCCGGCTAGTTTACAAGTTTCCTCGCCTCTTGTTGATGGATGT CAACGCGCACCTCATTCCCAGAGCGGACGACTTCCGAAAGTCGATGGGGC TTGAAGGCTTAGAACCGTTGTCTCCGAAGGTGCGCAATAGGCCCAAACAT CACTATCATCCACGGGAATCTCGCGAGGAGCCTAGTAATTATAGAGGAAG GGGTAGAGGGGGTGGGGGAGGTGGGGGTCGAAGTCGGGGTACCCCGACAA ACGGTCGGGGGGAGGGAGGGTCGATGGGGCTTGAAGGCTTAGAACCGTTG TCTCCGAAGGTGCGCAATAGGCCCAAACATCACTATCATCCACGGGAATC TCGCGAGGAGCCTAGTAATTATAGAGGAAGGGGTAGAGGGGGTGGGGGAG GTGGGGGTCGAAGTCGGGGTACCCCGACAAACGGTCGGGGGGAGGGAGGG back to top
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