prot_H-paniculata_contig4666.11628.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig4666.11628.1
Unique Nameprot_H-paniculata_contig4666.11628.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length175
Homology
[Close]
BLAST of mRNA_H-paniculata_contig4666.11628.1 vs. uniprot
Match: A0A6H5JYV1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYV1_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 2.000e-40
Identity = 78/122 (63.93%), Postives = 97/122 (79.51%), Query Frame = 0 
Query:   13 VSAMIREFPQILEVKTKRLKAVVKYLWKVLEIPKSGVAVLLSQHPRVCALEAEANVAPLRFFFERQLHVQDTARIGRLVYKFPRLLLMDVNAHLIPRADDFRKSMGLEGLEPLSPKVRNRPK 134
            + A++R+    LE++    K V+  L  VLEIP+SG+AVLLSQHPR C LEAEAN+APLR FFER+L V+DT+RIG LVYKFPRLL  DV+  L+PRA++FRK+MGLEGLEPL P+VR RPK
Sbjct:  447 LKAVVRKKGTELELQAFESKEVLGTLSSVLEIPRSGIAVLLSQHPRACCLEAEANLAPLRQFFERELFVEDTSRIGHLVYKFPRLLFQDVDTQLVPRAEEFRKAMGLEGLEPLPPRVRLRPK 568
[Close]
BLAST of mRNA_H-paniculata_contig4666.11628.1 vs. uniprot
Match: D7FVI5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVI5_ECTSI)

HSP 1 Score: 124 bits (311), Expect = 4.050e-30
Identity = 59/82 (71.95%), Postives = 70/82 (85.37%), Query Frame = 0 
Query:    1 FYRKEIGLQAYMVSAMIREFPQILEVKTKRLKAVVKYLWKVLEIPKSGVAVLLSQHPRVCALEAEANVAPLRFFFERQLHVQ 82
            + R E+GLQ   VS M+REFPQ+LEV+ KRLKAVV+Y WKVLEIP+SG+AVLLSQHPR C LEAEAN+APLR FFER+L V+
Sbjct:  392 YLRTEVGLQPLTVSGMVREFPQVLEVRPKRLKAVVRYFWKVLEIPRSGIAVLLSQHPRTCCLEAEANLAPLRQFFERELFVE 473
[Close]
BLAST of mRNA_H-paniculata_contig4666.11628.1 vs. uniprot
Match: A0A835YN67_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN67_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 2.690e-11
Identity = 34/79 (43.04%), Postives = 49/79 (62.03%), Query Frame = 0 
Query:   41 VLEIPKSGVAVLLSQHPRVCALEAEANVAPLRFFFERQLHVQDTARIGRLVYKFPRLLLMDVNAHLIPRADDFRKSMGL 119
            VL++       L+  HPR+  +EAE ++APLR FFE  L + DT RIG +V K P++L MD+   L P+A D R  +G+
Sbjct:  311 VLKLEPEVATRLVCSHPRLLGMEAEKDLAPLRHFFEYDLCITDTRRIGSIVAKLPQILFMDLETELRPKAADIRAKLGI 389
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4666.11628.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JYV1_9PHAE2.000e-4063.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVI5_ECTSI4.050e-3071.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YN67_9STRA2.690e-1143.04Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003690Transcription termination factor, mitochondrial/chloroplasticSMARTSM00733mt_12coord: 14..45
e-value: 4.7
score: 16.2
coord: 88..120
e-value: 2.8
score: 16.9
IPR003690Transcription termination factor, mitochondrial/chloroplasticPFAMPF02536mTERFcoord: 4..118
e-value: 3.5E-8
score: 32.8
IPR038538MTERF superfamily, mitochondrial/chloroplasticGENE3D1.25.70.10coord: 1..146
e-value: 1.4E-11
score: 46.1

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4666contigH-paniculata_contig4666:8765..15110 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4666.11628.1mRNA_H-paniculata_contig4666.11628.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig4666 8765..15110 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig4666.11628.1 ID=prot_H-paniculata_contig4666.11628.1|Name=mRNA_H-paniculata_contig4666.11628.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=175bp
FYRKEIGLQAYMVSAMIREFPQILEVKTKRLKAVVKYLWKVLEIPKSGVA
VLLSQHPRVCALEAEANVAPLRFFFERQLHVQDTARIGRLVYKFPRLLLM
DVNAHLIPRADDFRKSMGLEGLEPLSPKVRNRPKHHYHPRESREEPSNYR
GRGRGGGGGGGRSRGTPTNGRGEGG
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003690MTERF
IPR038538MTERF_sf