mRNA_H-paniculata_contig46655.11627.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig46655.11627.1
Unique NamemRNA_H-paniculata_contig46655.11627.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig46655.11627.1 vs. uniprot
Match: A0A6H5K1N9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1N9_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 5.460e-11
Identity = 31/77 (40.26%), Postives = 48/77 (62.34%), Query Frame = 2 
Query:    2 RIVRLNKAMYGLKQAGRMWSKRLVEVLVSNVGMTQSKSEPCVFKLEKIGAVDRILCVHVDDLMVAGKSVKCDSLFVA 232
            +IV+  +A+YGLKQ+GR W   + + LV N G  Q K++PCVF+      V  I+ ++VDD++VAG    C+ L  +
Sbjct:  910 KIVKAERAIYGLKQSGRQWGYHVADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIMIYVDDILVAGSDEDCEELLAS 985
[Close]
BLAST of mRNA_H-paniculata_contig46655.11627.1 vs. uniprot
Match: A0A6H5KSR8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSR8_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 6.940e-11
Identity = 31/77 (40.26%), Postives = 47/77 (61.04%), Query Frame = 2 
Query:    2 RIVRLNKAMYGLKQAGRMWSKRLVEVLVSNVGMTQSKSEPCVFKLEKIGAVDRILCVHVDDLMVAGKSVKCDSLFVA 232
            +IV+  +A+YGLKQ+GR W     + LV N G  Q K++PCVF+      V  I+ ++VDD++VAG    C+ L  +
Sbjct:   44 KIVKAERALYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLAS 119
[Close]
BLAST of mRNA_H-paniculata_contig46655.11627.1 vs. uniprot
Match: A0A6H5JH88_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH88_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 7.440e-11
Identity = 33/71 (46.48%), Postives = 45/71 (63.38%), Query Frame = 2 
Query:    5 IVRLNKAMYGLKQAGRMWSKRLVEVLVSNVGMTQSKSEPCVFKLEKIGAVDRILCVHVDDLMVAGKSVKCD 217
            IV+LNK++YGLKQA R W   LV  L+  +G  Q  ++ CVF+L + G V   L VHVDD+   G+  +CD
Sbjct:   42 IVKLNKSLYGLKQASRQWHSHLVRCLIC-LGFIQCLADTCVFRLIEEGRVVVTLAVHVDDIFSIGEEERCD 111
[Close]
BLAST of mRNA_H-paniculata_contig46655.11627.1 vs. uniprot
Match: A0A6H5KMJ1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMJ1_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 1.330e-10
Identity = 30/77 (38.96%), Postives = 47/77 (61.04%), Query Frame = 2 
Query:    2 RIVRLNKAMYGLKQAGRMWSKRLVEVLVSNVGMTQSKSEPCVFKLEKIGAVDRILCVHVDDLMVAGKSVKCDSLFVA 232
            ++V+  +A+YGLKQ+GR W     + LV N G  Q K++PCVF+      V  I+ ++VDD++VAG    C+ L  +
Sbjct:  310 KVVKAERAVYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDEDCEELLAS 385
[Close]
BLAST of mRNA_H-paniculata_contig46655.11627.1 vs. uniprot
Match: A0A6H5KS88_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS88_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 2.250e-10
Identity = 36/81 (44.44%), Postives = 50/81 (61.73%), Query Frame = 2 
Query:    2 RIVRLNKAMYGLKQAGRMWSKRLVEVLVSNVGMTQSKSEPCVFKLEKIGAVDRILCVHVDDLMVAGKSVKCDSLFVA*GRS 244
            +IVRLNK++YGLKQA R + KRLV  L+  +G  QS S+PCV +      V  I+ +HVDD++ AG     + +  A G S
Sbjct:    4 KIVRLNKSLYGLKQASRTFYKRLVSDLL-RIGFEQSLSDPCVLRFMMGDEVMGIIAIHVDDILYAGTKRLAEVIAEALGDS 83
[Close]
BLAST of mRNA_H-paniculata_contig46655.11627.1 vs. uniprot
Match: A0A4Y2FL03_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2FL03_ARAVE)

HSP 1 Score: 64.3 bits (155), Expect = 2.690e-10
Identity = 33/67 (49.25%), Postives = 47/67 (70.15%), Query Frame = 2 
Query:    2 RIVRLNKAMYGLKQAGRMWSKRLVEVLVSNVGMTQSKSEPCVFKLEKIGAVDRILCVHVDDLMVAGK 202
            ++ +LNKA+YGLKQA R W  ++ E L+   G  QSK++PC+FK  K G    I+ V+VDDL++AGK
Sbjct:   34 KVCKLNKAIYGLKQAARAWHLKIGESLIK-YGFEQSKADPCLFKFAKNGNPMYII-VYVDDLLIAGK 98
[Close]
BLAST of mRNA_H-paniculata_contig46655.11627.1 vs. uniprot
Match: A0A6H5JE29_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE29_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 2.960e-10
Identity = 29/94 (30.85%), Postives = 54/94 (57.45%), Query Frame = 2 
Query:    2 RIVRLNKAMYGLKQAGRMWSKRLVEVLVSNVGMTQSKSEPCVFKLEKIGAVDRILCVHVDDLMVAGKSVKCDSLFVA*GRSSKPREANSSGTWV 283
            +IV+  +A+YGLK++GR W     +  V + G  Q K++PCVF+  +   V  I+ +++DD++VAG    C+ L  +  ++  P+   ++  W 
Sbjct:  118 KIVKAERAIYGLKKSGRQWGCHAADTPVEH-GFEQCKADPCVFRKMEDEVVVMIIVIYMDDILVAGSDEDCEELLASLNKNFPPKILENANGWT 210
[Close]
BLAST of mRNA_H-paniculata_contig46655.11627.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 3.290e-10
Identity = 32/71 (45.07%), Postives = 44/71 (61.97%), Query Frame = 2 
Query:    5 IVRLNKAMYGLKQAGRMWSKRLVEVLVSNVGMTQSKSEPCVFKLEKIGAVDRILCVHVDDLMVAGKSVKCD 217
            IV+LNK++YGLKQA R W   L   L+  +G  Q  ++ CVF+L + G V   L VHVDD+   G+  +CD
Sbjct:   68 IVKLNKSLYGLKQASRQWHSHLARCLIC-LGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERCD 137
[Close]
BLAST of mRNA_H-paniculata_contig46655.11627.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 3.420e-10
Identity = 32/71 (45.07%), Postives = 44/71 (61.97%), Query Frame = 2 
Query:    5 IVRLNKAMYGLKQAGRMWSKRLVEVLVSNVGMTQSKSEPCVFKLEKIGAVDRILCVHVDDLMVAGKSVKCD 217
            IV+LNK++YGLKQA R W   L   L+  +G  Q  ++ CVF+L + G V   L VHVDD+   G+  +CD
Sbjct:  242 IVKLNKSLYGLKQASRQWHSHLARCLIC-LGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERCD 311
[Close]
BLAST of mRNA_H-paniculata_contig46655.11627.1 vs. uniprot
Match: A0A6H5JSK5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSK5_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 3.510e-10
Identity = 31/77 (40.26%), Postives = 47/77 (61.04%), Query Frame = 2 
Query:    2 RIVRLNKAMYGLKQAGRMWSKRLVEVLVSNVGMTQSKSEPCVFKLEKIGAVDRILCVHVDDLMVAGKSVKCDSLFVA 232
            +IV+  +A+YGLKQ+GR W   + + LV N G  Q K++PCVF       V  I+ ++VDD++VAG    C+ L  +
Sbjct:  473 KIVKAERAIYGLKQSGRQWGYHVADTLVEN-GFEQCKADPCVFCKMVNEVVVLIIVIYVDDILVAGSDEDCEELLAS 548
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig46655.11627.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K1N9_9PHAE5.460e-1140.26Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KSR8_9PHAE6.940e-1140.26Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JH88_9PHAE7.440e-1146.48Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KMJ1_9PHAE1.330e-1038.96Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KS88_9PHAE2.250e-1044.44Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A4Y2FL03_ARAVE2.690e-1049.25Retrovirus-related Pol polyprotein from transposon... [more]
A0A6H5JE29_9PHAE2.960e-1030.85Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JLN0_9PHAE3.290e-1045.07Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KQB8_9PHAE3.420e-1045.07Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JSK5_9PHAE3.510e-1040.26Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig46655contigH-paniculata_contig46655:2..293 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size292
Cds size210
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig46655.11627.1prot_H-paniculata_contig46655.11627.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig46655 27..236 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930390.8012867-UTR-H-paniculata_contig46655:1..261622930390.8012867-UTR-H-paniculata_contig46655:1..26Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig46655 2..26 +
1691481270.179394-UTR-H-paniculata_contig46655:1..261691481270.179394-UTR-H-paniculata_contig46655:1..26Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig46655 2..26 +
1622930390.8357434-UTR-H-paniculata_contig46655:236..2931622930390.8357434-UTR-H-paniculata_contig46655:236..293Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig46655 237..293 +
1691481270.198212-UTR-H-paniculata_contig46655:236..2931691481270.198212-UTR-H-paniculata_contig46655:236..293Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig46655 237..293 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930390.8173401-CDS-H-paniculata_contig46655:26..2361622930390.8173401-CDS-H-paniculata_contig46655:26..236Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46655 27..236 +
1691481270.1885967-CDS-H-paniculata_contig46655:26..2361691481270.1885967-CDS-H-paniculata_contig46655:26..236Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46655 27..236 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig46655.11627.1

>prot_H-paniculata_contig46655.11627.1 ID=prot_H-paniculata_contig46655.11627.1|Name=mRNA_H-paniculata_contig46655.11627.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=70bp
MYGLKQAGRMWSKRLVEVLVSNVGMTQSKSEPCVFKLEKIGAVDRILCVH
VDDLMVAGKSVKCDSLFVA*
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mRNA from alignment at H-paniculata_contig46655:2..293+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig46655.11627.1 ID=mRNA_H-paniculata_contig46655.11627.1|Name=mRNA_H-paniculata_contig46655.11627.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=292bp|location=Sequence derived from alignment at H-paniculata_contig46655:2..293+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TAGGATAGTAAGGCTGAATAAGGCTATGTATGGGCTCAAGCAGGCAGGAC
GGATGTGGTCAAAGCGCCTTGTAGAAGTACTCGTAAGCAACGTCGGCATG
ACGCAATCCAAGTCTGAACCTTGTGTGTTTAAGCTCGAGAAAATTGGGGC
GGTAGATAGGATTCTGTGTGTTCATGTAGATGATTTAATGGTTGCTGGAA
AAAGTGTGAAGTGCGATTCCCTGTTTGTGGCGTGAGGGCGGAGTTCCAAA
CCACGAGAGGCGAACTCAAGTGGTACCTGGGTTGTGCATTTT
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Coding sequence (CDS) from alignment at H-paniculata_contig46655:2..293+

>mRNA_H-paniculata_contig46655.11627.1 ID=mRNA_H-paniculata_contig46655.11627.1|Name=mRNA_H-paniculata_contig46655.11627.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=420bp|location=Sequence derived from alignment at H-paniculata_contig46655:2..293+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTATGGGCTCAAGCAGGCAGGACGGATGTGGTCAAAGCGCCTTGTAGA
AGTACTCGTAAGCAACGTCGGCATGACGCAATCCAAGTCTGAACCTTGTG
TGTTTAAGCTCGAGAAAATTGGGGCGGTAGATAGGATTCTGTGTGTTCAT
GTAGATGATTTAATGGTTGCTGGAAAAAGTGTGAAGTGCGATTCCCTGTT
TGTGGCGTGAATGTATGGGCTCAAGCAGGCAGGACGGATGTGGTCAAAGC
GCCTTGTAGAAGTACTCGTAAGCAACGTCGGCATGACGCAATCCAAGTCT
GAACCTTGTGTGTTTAAGCTCGAGAAAATTGGGGCGGTAGATAGGATTCT
GTGTGTTCATGTAGATGATTTAATGGTTGCTGGAAAAAGTGTGAAGTGCG
ATTCCCTGTTTGTGGCGTGA
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