mRNA_H-paniculata_contig4663.11621.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4663.11621.1
Unique NamemRNA_H-paniculata_contig4663.11621.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4663.11621.1 vs. uniprot
Match: D8LKA1_ECTSI (eIF-2B GDP-GTP exchange factor subunit epsilon n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKA1_ECTSI)

HSP 1 Score: 246 bits (629), Expect = 1.390e-70
Identity = 119/154 (77.27%), Postives = 133/154 (86.36%), Query Frame = 1 
Query:  427 QEGHPLDNLLLEIKSYKFAQNREFKECMRPAVEVVLDLAGAETVKGMTLVTSIQAQLKHWKPLLSKLNVEAADDVEIIKVVEGYALRPECEGTLRAVFRYVVQALQLEGMVLDECLTRWISLRRSTPPGSAERALFEQPAVQEFVSWFENAESS 888
            QEGHPLDNLLLEIKSYKFAQNREFKECMRPAVE+VLDLAGA+T  GM LV +++ QL+HWKPLLSKLNVEA DDVE+IKVVE YALRPECEGTLRAVFRYVVQ+   E MV ++CL RWI LRR+TP GS ER LFEQ  VQ FV+W E++ESS
Sbjct:  483 QEGHPLDNLLLEIKSYKFAQNREFKECMRPAVELVLDLAGADTGNGMALVAAVKTQLRHWKPLLSKLNVEAGDDVEMIKVVESYALRPECEGTLRAVFRYVVQSFFQEEMVSEDCLERWIQLRRATPQGSPERGLFEQKEVQAFVAWLEDSESS 636
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BLAST of mRNA_H-paniculata_contig4663.11621.1 vs. uniprot
Match: A0A835YX04_9STRA (eIF-2B GDP-GTP exchange factor subunit epsilon n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX04_9STRA)

HSP 1 Score: 156 bits (395), Expect = 2.320e-37
Identity = 79/152 (51.97%), Postives = 101/152 (66.45%), Query Frame = 1 
Query:  430 EGHPLDNLLLEIKSYKFAQNREFKECMRPAVEVVLDLAGA---ETVKGMTLVTSIQAQLKHWKPLLSKLNVEAADDVEIIKVVEGYALRPECEGTLRAVFRYVVQALQLEGMVLDECLTRWISLRRSTPPGSAERALFEQPAVQEFVSWFEN 876
            EGHP+DNLLLEIK YKFAQNR F EC+R + E VLDLAG    +   GM LV +++ QL+ WK LLS+L   AAD VE+I  VE YALRP     L  VFR+++Q L    +V +E + +WI+LRRS P  + E  LF  P  QEF++W E+
Sbjct:  578 EGHPIDNLLLEIKGYKFAQNRSFAECIRASTEAVLDLAGCGKPDAAAGMPLVAAVREQLQLWKTLLSRLAQNAADQVEVIMAVEQYALRPGKATPLAGVFRFILQLLYDTEVVSEEGMEQWIALRRSGPATAPEMTLFNAPQTQEFIAWLED 729
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BLAST of mRNA_H-paniculata_contig4663.11621.1 vs. uniprot
Match: A0A7S3V7W3_9STRA (eIF-2B GDP-GTP exchange factor subunit epsilon n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V7W3_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 2.580e-15
Identity = 53/155 (34.19%), Postives = 79/155 (50.97%), Query Frame = 1 
Query:  439 PLDNLLLEIKSYKFAQNREFKECMRPAVEVVLDLAG--AETVKGMTLVTSIQAQLKHWKPLLSKLNVEAADDVEIIKVVEGYALRPECEGTL---RAVFRYVVQALQLEGMVLDECLTRWISLRRSTPPGSAERALFEQPAVQEFVSWFENAESS 888
            P++NL +E+ S+KF+QN  F EC+  A+  + D  G  AET     L+   +A+L HW  LL K      ++  +I  VE  A      G L   +  FR+V+Q L  + ++ +E +  W  LRR     SA+  LF+Q   Q+FV W E    S
Sbjct:  624 PIENLGIELNSFKFSQNATFGECVTGAILAIFDRLGLTAETTAAK-LIALFKAELTHWGELLEKFCHTMEEEKSVIIAVETAATGGGIVGDLLSKQPAFRFVLQTLHDQELISEEAIISWAKLRRDGNAESAQGKLFQQAPTQQFVEWIEEDSDS 777
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BLAST of mRNA_H-paniculata_contig4663.11621.1 vs. uniprot
Match: A0A1V9ZXB9_9STRA (eIF-2B GDP-GTP exchange factor subunit epsilon n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZXB9_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 2.300e-14
Identity = 41/152 (26.97%), Postives = 81/152 (53.29%), Query Frame = 1 
Query:  433 GHPLDNLLLEIKSYKFAQNREFKECMRPAVEVVLDLAGAETVKGMTLVTSIQAQLKHWKPLLSKLNVEAADDVEIIKVVEGYALRPECEGTLRAVFRYVVQALQLEGMVLDECLTRWISLRRSTPPGSAERALFEQPAVQEFVSWFENAESS 888
            G  ++NL LEIKS+KFAQNR F +C++  +  + ++        M ++  ++ +L+ W  +++K  +   +  +I+ V+  Y L P    + + +FR+++Q       + ++ +  W +   +TP   AE  L + PA++EF+ W    E S
Sbjct:  675 GDDVENLFLEIKSFKFAQNRSFADCLQAILPALCNVIPRANKPPMAIMGLLKPKLEKWSGVVTKCIMNDVERTKIVDVIAAYCLNPSNSASFQTLFRFILQVAYDLEWITEDSIFEWENKVLATPQ-HAELVLLQTPAMKEFLEWLREDEES 825
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BLAST of mRNA_H-paniculata_contig4663.11621.1 vs. uniprot
Match: A0A024TAS1_9STRA (eIF-2B GDP-GTP exchange factor subunit epsilon n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TAS1_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 5.350e-14
Identity = 50/151 (33.11%), Postives = 79/151 (52.32%), Query Frame = 1 
Query:  433 GHPLDNLLLEIKSYKFAQNREFKECMRPAVEVVLDLAGAETVKGMTLVTSIQAQLKHWKPLLSKLNVEAADDVEIIKVVEGYALRPECEGTLRAVFRYVVQ-ALQLEGMVLDECLTRWISLRRSTPPGSAERALFEQPAVQEFVSWFENAE 882
            G  +DNL LEIKSYKFAQNR F +C+   +  +  L       GM +++ ++ +L+ W  +++K  +   + V I++++  Y L P    T   +FR+V+Q A  LE  V ++ +  W        PG     L + PAVQEF+ W    E
Sbjct:  554 GDGVDNLFLEIKSYKFAQNRSFADCLAAILPGLCSLIPRANKSGMQILSLLKPKLEKWSGVVNKCIMGDVERVAIVEILAAYCLDPANAATYAGLFRFVLQIAYDLE-WVTEDNIFEWEE--NEDAPGHP--TLVDDPAVQEFLEWLRGDE 699
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BLAST of mRNA_H-paniculata_contig4663.11621.1 vs. uniprot
Match: A0A1Z5JJC9_FISSO (eIF-2B GDP-GTP exchange factor subunit epsilon n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JJC9_FISSO)

HSP 1 Score: 85.9 bits (211), Expect = 5.480e-14
Identity = 47/156 (30.13%), Postives = 83/156 (53.21%), Query Frame = 1 
Query:  439 PLDNLLLEIKSYKFAQNREFKECMRPAVEVVLDLAG-AETVKGMTLVTSIQAQLKHWKPLLSKLNVEAADDVEIIKVVEGYALRPECEGTLRAV---FRYVVQALQLEGMVLDECLTRWISLRRS---TPPGSAERALFEQPAVQEFVSWFENAES 885
            P++NL +E+ S+KF+QN  + +C+  A   +L+     + +K + + T  +  L+HW PLL K+++   ++  I+  +E  A      GT+ +    FR+++  L+ E +V D+ +  W   R++   TP G     LF   AVQEF+ W    ES
Sbjct:  568 PIENLAIELNSFKFSQNASYSDCVTAATMAILERMNITKDMKDVKMATEFKKALQHWAPLLQKMSITMEEEKAIVLALERCACEETEMGTVLSSGMSFRFLLTVLEDEEVVSDKAIFAWADERKTEGDTPRGR----LFRSKAVQEFLEWLREEES 719
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BLAST of mRNA_H-paniculata_contig4663.11621.1 vs. uniprot
Match: B7G1D3_PHATC (eIF-2B GDP-GTP exchange factor subunit epsilon n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G1D3_PHATC)

HSP 1 Score: 85.9 bits (211), Expect = 5.620e-14
Identity = 49/157 (31.21%), Postives = 84/157 (53.50%), Query Frame = 1 
Query:  418 LQ*QEGHPLDNLLLEIKSYKFAQNREFKECMRPAVEVVLDLAGA--ETVKGMTLVTSIQAQLKHWKPLLSKLNVEAADDVEIIKVVEGYALRPECEG-TLRA--VFRYVVQALQLEGMVLDECLTRWISLRRSTPPGSAERALFEQPAVQEFVSWFE 873
            L+ +   P++NL +E+ S+KF+QN  + +C   A   +L+      +T  G  LV   ++ L HW PLL K+++   ++  I+  +E  AL     G TL +   FR+++Q L  E +V DE +  W + R+    GS  + L + P V++F+ W E
Sbjct:  590 LEYEPASPIENLAIELNSFKFSQNATYVDCTTAATLAILEQMSITKDTTDGK-LVQEFKSYLDHWAPLLQKMSIGLDEEKGIVLALEQCALESNERGQTLSSGTSFRFLLQTLHDEEIVSDEAILSWAADRQEDADGSRLKKLLDLPLVKDFLEWLE 745
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BLAST of mRNA_H-paniculata_contig4663.11621.1 vs. uniprot
Match: A0A067CFN8_SAPPC (W2 domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CFN8_SAPPC)

HSP 1 Score: 83.6 bits (205), Expect = 3.330e-13
Identity = 40/145 (27.59%), Postives = 75/145 (51.72%), Query Frame = 1 
Query:  433 GHPLDNLLLEIKSYKFAQNREFKECMRPAVEVVLDLAGAETVKGMTLVTSIQAQLKHWKPLLSKLNVEAADDVEIIKVVEGYALRPECEGTLRAVFRYVVQALQLEGMVLDECLTRWISLRRSTPPGSAERALFEQPAVQEFVSW 867
            G  ++NL LEIKS+KFAQNR F +C+   +  + +         M ++  ++A+L+ W  ++SK  +   + V+I+  +  Y +      +  ++FRY++Q       + +E +  W     +  P   E+AL +  A+QEF+ W
Sbjct:  708 GDDVENLFLEIKSFKFAQNRSFADCLEAILPALCNAIPRANKAPMAIMGLLKAKLEKWSGVVSKCIMNDVERVKIVDTLAAYCVHATNSASFGSLFRYILQVAYDLDWITEETVFGWEDKVLAEAPSHPEQALLKAAAMQEFLEW 852
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BLAST of mRNA_H-paniculata_contig4663.11621.1 vs. uniprot
Match: A0A2P4YLK1_9STRA (Translation initiation factor eIF-2B subunit epsilon n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YLK1_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 6.640e-13
Identity = 49/157 (31.21%), Postives = 82/157 (52.23%), Query Frame = 1 
Query:  433 GHPLDNLLLEIKSYKFAQNREFKECMRPAVEVVLDLAGAETVKG-MTLVTSIQAQLKHWKPLLSKLNVEAADDVEIIKVVEGYALRPECEGTL-RAVFRYVVQALQLEGMVLDECLTRWISLRRSTPPGSAERALFEQPA-----VQEFVSWFENAE 882
            GH +D+L +EIKS+KFAQNR F E +   V  +LDL      +  MT++ +++ + + W  ++ +  VE  D V I+  +EGY   PE    L   +FR+++Q +     V ++ +  W   ++ T  G  E  L    A     VQEF+ W + ++
Sbjct:  278 GHNVDDLFMEIKSFKFAQNRSFAEVIGAIVPGLLDLIPTGNGQSAMTILGNVRTKFQKWSSVIQRCIVEQEDQVAIVDALEGYCSSPEERRVLWLPLFRFLLQTVYDLEWVSEDVILEWHDTKQ-TVAGEKEHTLDPLAASSKKDVQEFIDWLQESD 433
[Close]
BLAST of mRNA_H-paniculata_contig4663.11621.1 vs. uniprot
Match: G4Z725_PHYSP (W2 domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=G4Z725_PHYSP)

HSP 1 Score: 80.9 bits (198), Expect = 2.150e-12
Identity = 44/155 (28.39%), Postives = 80/155 (51.61%), Query Frame = 1 
Query:  433 GHPLDNLLLEIKSYKFAQNREFKECMRPAVEVVLDLAGA-ETVKGMTLVTSIQAQLKHWKPLLSKLNVEAADDVEIIKVVEGYALRPECEGTL-RAVFRYVVQALQLEGMVLDECLTRWISLRRSTPP---GSAERALFEQPAVQEFVSWFENAE 882
            GH +D+L +EIKS+KFAQNR F E +   V  +LDL         MT++ +++ + + W  ++ +  VE  D + ++  +EGY   PE    +   +FR+++Q +     V ++ +  W   +++       S   A   +  VQEF+ W + +E
Sbjct:  577 GHNVDDLFMEIKSFKFAQNRSFAEVIGAIVPGLLDLIPTGNRQSAMTILGNVRTKFQKWSSVIQRCLVEQEDQLAVVDALEGYCTEPEERRVIWLPLFRFLLQTVYDLEWVSEDVILEWHEAKQANADEDEASDALAAASKKDVQEFIDWLQESE 731
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4663.11621.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKA1_ECTSI1.390e-7077.27eIF-2B GDP-GTP exchange factor subunit epsilon n=2... [more]
A0A835YX04_9STRA2.320e-3751.97eIF-2B GDP-GTP exchange factor subunit epsilon n=1... [more]
A0A7S3V7W3_9STRA2.580e-1534.19eIF-2B GDP-GTP exchange factor subunit epsilon n=1... [more]
A0A1V9ZXB9_9STRA2.300e-1426.97eIF-2B GDP-GTP exchange factor subunit epsilon n=1... [more]
A0A024TAS1_9STRA5.350e-1433.11eIF-2B GDP-GTP exchange factor subunit epsilon n=2... [more]
A0A1Z5JJC9_FISSO5.480e-1430.13eIF-2B GDP-GTP exchange factor subunit epsilon n=2... [more]
B7G1D3_PHATC5.620e-1431.21eIF-2B GDP-GTP exchange factor subunit epsilon n=1... [more]
A0A067CFN8_SAPPC3.330e-1327.59W2 domain-containing protein n=2 Tax=Saprolegnia T... [more]
A0A2P4YLK1_9STRA6.640e-1331.21Translation initiation factor eIF-2B subunit epsil... [more]
G4Z725_PHYSP2.150e-1228.39W2 domain-containing protein n=4 Tax=Phytophthora ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4663contigH-paniculata_contig4663:1543..6040 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score188.3
Seed ortholog evalue2.7e-45
Seed eggNOG ortholog2880.D8LKA1
Preferred nameEIF2B5
KEGG koko:K03240,ko:K03859
KEGG ReactionR05916
KEGG Pathwayko00563,ko01100,ko03013,map00563,map01100,map03013
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0001541,GO:0002181,GO:0002183,GO:0002253,GO:0002376,GO:0002429,GO:0002682,GO:0002684,GO:0002757,GO:0002764,GO:0002768,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005085,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005851,GO:0006412,GO:0006413,GO:0006417,GO:0006446,GO:0006518,GO:0006807,GO:0006950,GO:0007154,GO:0007165,GO:0007166,GO:0007272,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0007548,GO:0007568,GO:0008135,GO:0008150,GO:0008152,GO:0008366,GO:0008406,GO:0008585,GO:0009058,GO:0009059,GO:0009266,GO:0009408,GO:0009628,GO:0009719,GO:0009725,GO:0009743,GO:0009746,GO:0009749,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010001,GO:0010033,GO:0010035,GO:0010038,GO:0010226,GO:0010243,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0010941,GO:0010942,GO:0014002,GO:0014003,GO:0019222,GO:0019538,GO:0019899,GO:0021537,GO:0021543,GO:0021761,GO:0021766,GO:0021782,GO:0022008,GO:0022414,GO:0023052,GO:0030154,GO:0030900,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031369,GO:0032045,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032991,GO:0033554,GO:0034248,GO:0034250,GO:0034284,GO:0034641,GO:0034645,GO:0034976,GO:0042063,GO:0042221,GO:0042552,GO:0042981,GO:0043043,GO:0043065,GO:0043067,GO:0043068,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043434,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0045137,GO:0045727,GO:0045948,GO:0046545,GO:0046660,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048608,GO:0048708,GO:0048709,GO:0048731,GO:0048856,GO:0048869,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050851,GO:0050852,GO:0050896,GO:0051020,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051716,GO:0060255,GO:0060322,GO:0061458,GO:0065007,GO:0065009,GO:0071704,GO:0080090,GO:0097159,GO:0098772,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901652,GO:1901698,GO:1901700,GO:2000112
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG1208@1,KOG1461@2759
Ec32 ortholog descriptioneukaryotic translation initiation factor 2B epsilon subunit
Ec32 orthologEc-01_009500.3
COG Functional cat.JM
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03012
Exons4
Model size1520
Cds size474
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4663.11621.1prot_H-paniculata_contig4663.11621.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4663 2050..5501 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930390.1961405-UTR-H-paniculata_contig4663:1542..20491622930390.1961405-UTR-H-paniculata_contig4663:1542..2049Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4663 1543..2049 +
1691481269.9438493-UTR-H-paniculata_contig4663:1542..20491691481269.9438493-UTR-H-paniculata_contig4663:1542..2049Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4663 1543..2049 +
1622930390.266169-UTR-H-paniculata_contig4663:5501..60401622930390.266169-UTR-H-paniculata_contig4663:5501..6040Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4663 5502..6040 +
1691481269.998247-UTR-H-paniculata_contig4663:5501..60401691481269.998247-UTR-H-paniculata_contig4663:5501..6040Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4663 5502..6040 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930390.2121928-CDS-H-paniculata_contig4663:2049..21031622930390.2121928-CDS-H-paniculata_contig4663:2049..2103Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4663 2050..2103 +
1691481269.958905-CDS-H-paniculata_contig4663:2049..21031691481269.958905-CDS-H-paniculata_contig4663:2049..2103Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4663 2050..2103 +
1622930390.225139-CDS-H-paniculata_contig4663:3735..38601622930390.225139-CDS-H-paniculata_contig4663:3735..3860Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4663 3736..3860 +
1691481269.969715-CDS-H-paniculata_contig4663:3735..38601691481269.969715-CDS-H-paniculata_contig4663:3735..3860Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4663 3736..3860 +
1622930390.2402-CDS-H-paniculata_contig4663:4318..44291622930390.2402-CDS-H-paniculata_contig4663:4318..4429Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4663 4319..4429 +
1691481269.9782112-CDS-H-paniculata_contig4663:4318..44291691481269.9782112-CDS-H-paniculata_contig4663:4318..4429Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4663 4319..4429 +
1622930390.2539694-CDS-H-paniculata_contig4663:5317..55011622930390.2539694-CDS-H-paniculata_contig4663:5317..5501Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4663 5318..5501 +
1691481269.987297-CDS-H-paniculata_contig4663:5317..55011691481269.987297-CDS-H-paniculata_contig4663:5317..5501Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4663 5318..5501 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4663.11621.1

>prot_H-paniculata_contig4663.11621.1 ID=prot_H-paniculata_contig4663.11621.1|Name=mRNA_H-paniculata_contig4663.11621.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=158bp
MRPAVEVVLDLAGAETVKGMTLVTSIQAQLKHWKPLLSKLNVEAADDVEI
IKVVEGYALRPECEGTLRAVFRYVVQALQLEGMVLDECLTRWISLRRSTP
PGSAERALFEQPAVQEFVSWFENAESSSEEEDDDDDDDDDDDYEDDVTEV
AEYDLEI*
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mRNA from alignment at H-paniculata_contig4663:1543..6040+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4663.11621.1 ID=mRNA_H-paniculata_contig4663.11621.1|Name=mRNA_H-paniculata_contig4663.11621.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4498bp|location=Sequence derived from alignment at H-paniculata_contig4663:1543..6040+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGTGTGTATGCGTGTTTTACTATTTGGTATGTGTTAACAGTGTTTTGTCT
GTGCTAGTTGGTGAAATCCGCGCTCGAAAGGCGCAGTTGCTCGGGTTGGA
TACGCTTGTGTGGTAATGAGGCCTTCTCTGTTTCCGGAAAGAGTACCCTG
AAGCCGTTGAAAGACTAGTATCTCGGCCCTTGGCGGAAAAGCTAGCAGAA
TAAATGCTGTATGAGACAGAACATAGATAGTTGCATGTTGGCACTTGTTG
TTTTTGTTTCGATGCACAGTCAACGTGCGTACGAGGTGAGTCAATTGTCG
GATGGTTTGTGGTCATTTGGGGTGGTGCGTTTATTTTCATGCTGTGCGTC
CTTTTTTCATTGCTTTTGTTTGGTCCACCCCCCTTCCCCCTTCCCTGTTT
GTCGCTTTTTTTTATGGTTACAATGACAGGAGGGTCATCCCCTGGACAAC
TTGTTACTGGAGATAAAGAGTTACAAGTTCGCCCAAAATCGCGAGTTCAA
GGAGTGCATGCGTCCCGCGGTTGAAGTGGTACTGGATCTTGCTGGCGCGG
AAACCGTAAAGGTGAGTTGGGATCTCTTCTTTTTGTCGGATTATGCAAAA
TATCGAGTTGGATGTTCACCGCAGGGGTAAGTCGCGTCTTTTAATTAACC
CCACAATAAATGTTTCATCACCACGGATGTTGTCATGAGCCCGAAATGGA
ATATGACCTAGTCGTGCGGGGAAGCGGTTGATATGGGGACGTCGTGTGAT
GGCTATATCAATGGTAATGTATTGGTGTTATTATCGATTTTAGGATGTAT
TGGTTGTACGGTAGCGCTACGCTATTTTATCGCGTTTTGGGTCTGCTCGT
GTGACTGATGAACCAAAAGTAAAGGATCTCTCTCACAGAAGAACGCGAGG
GCAACTGGTGAACGGCTCGCGGGTTTATGGGTGCAGAAAGAAAGTTTGGG
AATCCCGGCGGCGTCACGGGGCCTACACGAATGATGATGTACTGTAGTTT
GTAGCGAAACATGACGTGTTGTGTCGTGCTGGAGATTCTCTCTTCTCTCC
AGTTGATTTTGTTTTGCTCGAGATAGATGATCATTCATACAAAAGACTTG
TCTAGGGTTTTTTAGTTTTGTGTCGTATTTTTGACCTGGGGGTCAACGCA
ATTATTGGATCCTATGAAAGAACCATGTGTGTCGCGTGGAATCTAAATCT
ATACATGATGGAAGACATCACGTTATCAGACAAGGTGGTGCTGCAGCATT
GATTGCCTGTCCTGCGTTGCTGTGTGTGTTACACACATACAAAAGCTTTT
TTTGCATAGCCTACAAAAAGGGCCCGCCAACCCGCCTACACGACCCAGCG
ACCATAAAAAAATCTGCACCCACAGAAGTAGAGTAAGAAGCGTTCAGAGG
GTAGGGGAGGAAAGGGGGGGCTTCAGCTCTGCATTCTGCGAGCCCCCTTG
AACATACTTCTTTTTTTTTTTTTTTTACCCCCGGAAGAAGGCCGAGGCAA
AAGCCTTTACCGATGCTGCCATACTTACGTATTTTACCAAAGTATTACTA
CATTTCCTTTAACAAAACAGAGTTATTTATTCCTCTGTGGGGTAGGCGCC
ACCCCAGTTCGGCCCAACCAAGTAGGCAGTGTGGGGATAGCACCCACTAA
AAGACCTCTGATTGAACATACGATAGTGCGGCTAGCAAGCAAGCATACGG
TGGATTTAAATGCCATGGCGATAGTTGTAAATATTTGTACTTGTTGTTAG
GGTGTACCGTTTATGTCGTTATTCAGTTGTATCTGTGGTACTGCCGAACT
CCTCGGATTATATGCATATCGTAATATCGTTCCCCGACCGTGTTTTCTTC
TATGCACTCGAGTAAGTTTGTGTCTGTATTGTTTGTTAGCGCAGCGAGCT
GTCGTTTGTGGGTGGACGGCGAAGCACGGACTGCACCGGTGTAGCCGGGC
CTGCTCTCCTATCAGTGTGTATTCAGTGATCATAACCGCCACCGCGCTCT
AGTGTACCGCAACCGCGTCAGTCAGGTAAATAATGTCGTTGGTCAAGTCC
ATCTGTTCCCTGGTACCGCCGATTTTGCACCTGGTATATTGAATCGGCTA
AAAGAGTGTTGTATATGCCATTTTTTTAAATTGATGTCGTTATGGTTGTT
GTTTGCGATTTTGTTCGTTGTTGCCGCGTTTACGCAAAATCAGGGCATGA
CGTTGGTGACGTCTATCCAGGCCCAGCTGAAGCATTGGAAGCCGCTGTTG
TCCAAACTAAACGTTGAGGCAGCAGACGATGTTGAGATAATCAAGGTGGT
GGAGGGATACGCGCTCAGGTAACTCCTCCGTATTGCAACGCAACACACAC
AAACACACACACACACACACACACAGCGCCCTTTTATCTAGCGACGATCA
ACAACGTGTCTCGCTCGCTCTTCCTTGCAGATTCGCCTCTCTTCACACGA
TTGTCCACTGCTGATCCGTAGGAAGCTGGCGGGCATTGATGATTAACTCG
TCCGGGTTATGGAAAATTCTTGTGGTTCCTGAACACCCCCGGTCCCCTGT
ACAACATCTCGACGGCGTTCCTGTTCCATGTTGGGAAACAAGTTTTGTAG
CTGCTTCCACTTGTCATCAGAAGATGTCTCAATCTACCCTCCTACTGATG
TAATTTGGCTGTTTTAGTCTACACAAATGAAGTTTGAGGTTAGCTACATA
ACGTCAATATACGGGTACGGTGCCCCTGCCTCCCCCCCTACCGCGGCTGC
AACCAAAAAATGTTATGTTTCCACAGACCAGAGTGCGAGGGAACGTTGAG
AGCGGTCTTTCGATATGTGGTGCAGGCATTGCAGCTGGAGGGAATGGTGT
TGGACGAGTGCTTGACCAGATGGATTTCGTTGCGAAGGTGGGAATACCTG
TGACCTTGGCTTCCTCTGCAGCTCGCTCATTTTTTTCTTTAGTTGATGCG
TTTTTTTGTTATTTCGTTGCGCCAATTGGACAGACGAGAGACCGTTGTTG
GCCGCTTATGCCCTGTGGCTGTGTCTTGCCCTTCTCTCTTCCATTGCTTT
CAATGCAGATCAGCAAGTTGGCATTTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTTTTTAAAGCGTAGATTTTTGTAGTTGTCCTGTACGTTGTAAAGT
GTAACTTGTCATTTTTTTAATTTGGAGTTTTTTTTCAGAGGTGATGGATT
TTTCGCTTCATGGCATGGAAAACCTAACACATGAGACAGTGCTAGCAAAT
TTGTGGATGGGTATAGCACAACGGGGGGGGGGGGGCTTGGTCGTTCAGAT
TGACTCTTGCGGGTCGGGTGAGAGGTCTATGGATGTTTTCAGTTGAGGCG
GATCACGGCCCCCATCAACCTTCCTTCATATCATGGTTTATCCAAAGTCA
GCGGTCCTTATTTTTTACCTGCTACACCGACTGCAGTTGTAGGTACCCAG
GATGGCTGCCTGGATTCTGTTGTTCTCCGGGTTTGTAATGTTACTGTTTG
CACACGATGGGTTCAACGTTGTTAGGAGCTGTGGTCGAAGAAGTGTTATT
TTCCACAAGAGGCTGTCAAGGAGGCGCAGACACCAACAGTCAAGTGTGCC
TCATATCTTTTTCATGTCGTGTCAGGGGAATATTTTTGTGTTGATACGAA
GCAATTAGCGTCTAAAACGTAGATGCTGCTGCATTTTCAGGTTTCTTGAG
GAAATCGTTGAACATAAAAAAAAAATAGTCACCATCTGAAAACTACGATC
CTTGCCCTGTCTTTTGTTTTGAAAGGTCAACGCCACCAGGCTCGGCGGAG
AGGGCTTTGTTCGAGCAGCCTGCGGTGCAAGAATTTGTGTCGTGGTTCGA
AAACGCAGAATCGTCGTCAGAAGAGGAGGATGACGACGATGACGACGACG
ACGATGACGACTACGAGGACGACGTGACGGAAGTAGCAGAATATGATTTA
GAAATTTAGTGTGATTATTGTGTGGTTTTGTTACGTGAATCGATTTTGGT
TGGCAACTTTTTATGTGTTATTCCTCGTTCTCCCCCCCCCCACCCAAAGT
TGTTTTCGCTAGATCTTAACCTAGGTCATGTGTTGTTGTTGTTGATGGAA
GTCGCCTTTGCTGTTGTGACAGATGTAGTATTCCACGAAGAGAAATATAA
GGCAGAGGGAACTTTGAGAGCTCTCAAAGTTCCGCGTAGTAGTATGTACG
TGCCTGTTATGACAGATGAGAAAGTTCAGTAGTCTCGATAGCAAAAACTC
ATATGTTGGTAGCACAGAATCAATTCGCTGCGCTCGCATGTTGGCGCTGT
GTCCCATTAATAGTAATTGTCGGAAGTTACCGGAGTACGGAGTTGAAAAC
CTGTTTCAAAAATGATCATCGCCCTTCACATGTACCATACAGGAAAATAC
ATGGAATTGTTCACTATGTCGTGGAGTACACGACAGGACGGAAGAATCGC
TTTCTAATATTCCGAATGAGCCTTACGCCTTGTACAACATGGGCCCGC
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Coding sequence (CDS) from alignment at H-paniculata_contig4663:1543..6040+

>mRNA_H-paniculata_contig4663.11621.1 ID=mRNA_H-paniculata_contig4663.11621.1|Name=mRNA_H-paniculata_contig4663.11621.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=948bp|location=Sequence derived from alignment at H-paniculata_contig4663:1543..6040+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGTCCCGCGGTTGAAGTGGTACTGGATCTTGCTGGCGCGGAAACCGT
AAAGATGCGTCCCGCGGTTGAAGTGGTACTGGATCTTGCTGGCGCGGAAA
CCGTAAAGGGCATGACGTTGGTGACGTCTATCCAGGCCCAGCTGAAGCAT
TGGAAGCCGCTGTTGTCCAAACTAAACGTTGAGGCAGCAGACGATGTTGA
GATAATCAAGGTGGTGGAGGGATACGCGCTCAGGGCATGACGTTGGTGAC
GTCTATCCAGGCCCAGCTGAAGCATTGGAAGCCGCTGTTGTCCAAACTAA
ACGTTGAGGCAGCAGACGATGTTGAGATAATCAAGGTGGTGGAGGGATAC
GCGCTCAGACCAGAGTGCGAGGGAACGTTGAGAGCGGTCTTTCGATATGT
GGTGCAGGCATTGCAGCTGGAGGGAATGGTGTTGGACGAGTGCTTGACCA
GATGGATTTCGTTGCGAAGACCAGAGTGCGAGGGAACGTTGAGAGCGGTC
TTTCGATATGTGGTGCAGGCATTGCAGCTGGAGGGAATGGTGTTGGACGA
GTGCTTGACCAGATGGATTTCGTTGCGAAGGTCAACGCCACCAGGCTCGG
CGGAGAGGGCTTTGTTCGAGCAGCCTGCGGTGCAAGAATTTGTGTCGTGG
TTCGAAAACGCAGAATCGTCGTCAGAAGAGGAGGATGACGACGATGACGA
CGACGACGATGACGACTACGAGGACGACGTGACGGAAGTAGCAGAATATG
ATTTAGAAATTTAGGTCAACGCCACCAGGCTCGGCGGAGAGGGCTTTGTT
CGAGCAGCCTGCGGTGCAAGAATTTGTGTCGTGGTTCGAAAACGCAGAAT
CGTCGTCAGAAGAGGAGGATGACGACGATGACGACGACGACGATGACGAC
TACGAGGACGACGTGACGGAAGTAGCAGAATATGATTTAGAAATTTAG
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