prot_H-paniculata_contig4663.11621.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig4663.11621.1
Unique Nameprot_H-paniculata_contig4663.11621.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length158
Homology
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BLAST of mRNA_H-paniculata_contig4663.11621.1 vs. uniprot
Match: D8LKA1_ECTSI (eIF-2B GDP-GTP exchange factor subunit epsilon n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKA1_ECTSI)

HSP 1 Score: 189 bits (479), Expect = 1.010e-53
Identity = 92/127 (72.44%), Postives = 106/127 (83.46%), Query Frame = 0 
Query:    1 MRPAVEVVLDLAGAETVKGMTLVTSIQAQLKHWKPLLSKLNVEAADDVEIIKVVEGYALRPECEGTLRAVFRYVVQALQLEGMVLDECLTRWISLRRSTPPGSAERALFEQPAVQEFVSWFENAESS 127
            MRPAVE+VLDLAGA+T  GM LV +++ QL+HWKPLLSKLNVEA DDVE+IKVVE YALRPECEGTLRAVFRYVVQ+   E MV ++CL RWI LRR+TP GS ER LFEQ  VQ FV+W E++ESS
Sbjct:  510 MRPAVELVLDLAGADTGNGMALVAAVKTQLRHWKPLLSKLNVEAGDDVEMIKVVESYALRPECEGTLRAVFRYVVQSFFQEEMVSEDCLERWIQLRRATPQGSPERGLFEQKEVQAFVAWLEDSESS 636
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4663.11621.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKA1_ECTSI1.010e-5372.44eIF-2B GDP-GTP exchange factor subunit epsilon n=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016021MIF4G-like domain superfamilyGENE3D1.25.40.180coord: 1..142
e-value: 7.3E-14
score: 53.7
IPR003307W2 domainPROSITEPS51363W2coord: 1..131
score: 10.302

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4663contigH-paniculata_contig4663:2050..5501 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4663.11621.1mRNA_H-paniculata_contig4663.11621.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig4663 1543..6040 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig4663.11621.1 ID=prot_H-paniculata_contig4663.11621.1|Name=mRNA_H-paniculata_contig4663.11621.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=158bp
MRPAVEVVLDLAGAETVKGMTLVTSIQAQLKHWKPLLSKLNVEAADDVEI
IKVVEGYALRPECEGTLRAVFRYVVQALQLEGMVLDECLTRWISLRRSTP
PGSAERALFEQPAVQEFVSWFENAESSSEEEDDDDDDDDDDDYEDDVTEV
AEYDLEI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR016021MIF4-like_sf
IPR003307W2_domain