mRNA_H-paniculata_contig46611.11617.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig46611.11617.1
Unique NamemRNA_H-paniculata_contig46611.11617.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig46611.11617.1 vs. uniprot
Match: A0A6H5KLE6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLE6_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 4.410e-22
Identity = 43/91 (47.25%), Postives = 61/91 (67.03%), Query Frame = 1 
Query:   10 EVQEGFNYVDSKWVYKWKCDPQGVIDRAESRTLGKGYSQLEGVDYHATFAPTASATSNRLLAVIVCLLD*DLRKFDAKQAFVQSDLDTEIY 282
            ++  G N +D++WVYKWK +  G I +A++R + KG+ Q  GVDY  TF+PTA A S RLL  + C  D +L   D +QAFVQS+LD E++
Sbjct:   52 KIPIGCNVIDARWVYKWKANETGKILKAKARLVAKGFKQKHGVDYFETFSPTAHAASIRLLVALACKYDLELLHLDIEQAFVQSELDHEVF 142
[Close]
BLAST of mRNA_H-paniculata_contig46611.11617.1 vs. uniprot
Match: A0A6H5JKR2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKR2_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 1.860e-21
Identity = 42/85 (49.41%), Postives = 60/85 (70.59%), Query Frame = 1 
Query:   28 NYVDSKWVYKWKCDPQGVIDRAESRTLGKGYSQLEGVDYHATFAPTASATSNRLLAVIVCLLD*DLRKFDAKQAFVQSDLDTEIY 282
            N +D++WVYKW+ D  G I +A++R + KG+ Q  GVDY  TF+PTA+A S RLL  + C  + +L  FD +QAFVQS+LD E++
Sbjct:  222 NVIDARWVYKWEADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLLVALACKYNLELLHFDIEQAFVQSELDHEVF 306
[Close]
BLAST of mRNA_H-paniculata_contig46611.11617.1 vs. uniprot
Match: A0A6H5JTA3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTA3_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 6.360e-21
Identity = 42/87 (48.28%), Postives = 59/87 (67.82%), Query Frame = 1 
Query:   22 GFNYVDSKWVYKWKCDPQGVIDRAESRTLGKGYSQLEGVDYHATFAPTASATSNRLLAVIVCLLD*DLRKFDAKQAFVQSDLDTEIY 282
            G N +D++WVYKW  D  G I +A++R + +G+ Q  GVDY  TF+PTA+A S RLL  + C  D +   FD +QAFVQS+LD E++
Sbjct:  237 GCNVIDARWVYKWSADKTGKIVKAKARLVAEGFKQKYGVDYLETFSPTANAASIRLLIALACKYDLEFLHFDIEQAFVQSELDHEVF 323
[Close]
BLAST of mRNA_H-paniculata_contig46611.11617.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 8.960e-21
Identity = 42/91 (46.15%), Postives = 64/91 (70.33%), Query Frame = 1 
Query:   10 EVQEGFNYVDSKWVYKWKCDPQGVIDRAESRTLGKGYSQLEGVDYHATFAPTASATSNRLLAVIVCLLD*DLRKFDAKQAFVQSDLDTEIY 282
            +V  G N +D++WV+KWK D  G I +A++R + KG+ Q  GVDY  TF+PTA+A S+RL+  + C  + +L  +D +QAFVQS+LD E++
Sbjct:  752 KVPIGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVF 842
[Close]
BLAST of mRNA_H-paniculata_contig46611.11617.1 vs. uniprot
Match: A0A6H5K9B2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9B2_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 1.640e-20
Identity = 42/91 (46.15%), Postives = 64/91 (70.33%), Query Frame = 1 
Query:   10 EVQEGFNYVDSKWVYKWKCDPQGVIDRAESRTLGKGYSQLEGVDYHATFAPTASATSNRLLAVIVCLLD*DLRKFDAKQAFVQSDLDTEIY 282
            +V  G N +D++WV+KWK D  G I +A++R + KG+ Q  GVDY  TF+PTA+A S+RL+  + C  + +L  +D +QAFVQS+LD E++
Sbjct:   19 KVPIGCNVIDARWVFKWKADEIGKIVKAKARLVAKGFKQKYGVDYVETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVF 109
[Close]
BLAST of mRNA_H-paniculata_contig46611.11617.1 vs. uniprot
Match: A0A6H5L3I1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3I1_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 3.100e-20
Identity = 42/91 (46.15%), Postives = 63/91 (69.23%), Query Frame = 1 
Query:   10 EVQEGFNYVDSKWVYKWKCDPQGVIDRAESRTLGKGYSQLEGVDYHATFAPTASATSNRLLAVIVCLLD*DLRKFDAKQAFVQSDLDTEIY 282
            +V  G N +D++WV+KWK D  G I +A++R + KG+ Q  GVDY  TF+PTA+A S RL+  + C  + +L  +D +QAFVQS+LD E++
Sbjct:  716 KVPIGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASFRLVVALACKYNLELLHWDIEQAFVQSELDHEVF 806
[Close]
BLAST of mRNA_H-paniculata_contig46611.11617.1 vs. uniprot
Match: A0A6H5JBA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA7_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 3.110e-20
Identity = 42/91 (46.15%), Postives = 63/91 (69.23%), Query Frame = 1 
Query:   10 EVQEGFNYVDSKWVYKWKCDPQGVIDRAESRTLGKGYSQLEGVDYHATFAPTASATSNRLLAVIVCLLD*DLRKFDAKQAFVQSDLDTEIY 282
            +V  G N +D++WV+KWK D  G I +A++R + KG+ Q  GVDY  TF+PTA+A S RL+  + C  + +L  +D +QAFVQS+LD E++
Sbjct: 1197 KVPIGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASFRLVVALACKYNLELLHWDIEQAFVQSELDHEVF 1287
[Close]
BLAST of mRNA_H-paniculata_contig46611.11617.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 3.120e-20
Identity = 42/91 (46.15%), Postives = 63/91 (69.23%), Query Frame = 1 
Query:   10 EVQEGFNYVDSKWVYKWKCDPQGVIDRAESRTLGKGYSQLEGVDYHATFAPTASATSNRLLAVIVCLLD*DLRKFDAKQAFVQSDLDTEIY 282
            +V  G N +D++WV+KWK D  G I +A++R + KG+ Q  GVDY  TF+PTA+A S RL+  + C  + +L  +D +QAFVQS+LD E++
Sbjct:  926 KVPIGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASFRLVVALACKYNLELLHWDIEQAFVQSELDHEVF 1016
[Close]
BLAST of mRNA_H-paniculata_contig46611.11617.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 5.740e-20
Identity = 40/85 (47.06%), Postives = 61/85 (71.76%), Query Frame = 1 
Query:   28 NYVDSKWVYKWKCDPQGVIDRAESRTLGKGYSQLEGVDYHATFAPTASATSNRLLAVIVCLLD*DLRKFDAKQAFVQSDLDTEIY 282
            N +D++WV+KWK D  G I +A++R + KG+ Q  GVDY  TF+PTA+A S+RL+  + C  + +L  +D +QAFVQS+LD E++
Sbjct:  491 NVIDARWVFKWKADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVF 575
[Close]
BLAST of mRNA_H-paniculata_contig46611.11617.1 vs. uniprot
Match: A0A6H5JKT7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKT7_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 9.360e-20
Identity = 41/87 (47.13%), Postives = 60/87 (68.97%), Query Frame = 1 
Query:   22 GFNYVDSKWVYKWKCDPQGVIDRAESRTLGKGYSQLEGVDYHATFAPTASATSNRLLAVIVCLLD*DLRKFDAKQAFVQSDLDTEIY 282
            G N ++++WVYKWK D  G I +AE+R + +G+ Q   VDY  TF+PTA+A+S RLL  + C  D +   F+ +QAFVQS+LD E++
Sbjct:  170 GCNVINARWVYKWKADETGKIVKAEARLVAEGFKQKHVVDYLGTFSPTANASSIRLLVALACKYDLEFFHFEIEQAFVQSELDHEVF 256
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig46611.11617.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KLE6_9PHAE4.410e-2247.25Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JKR2_9PHAE1.860e-2149.41Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JTA3_9PHAE6.360e-2148.28Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JRL9_9PHAE8.960e-2146.15Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5K9B2_9PHAE1.640e-2046.15Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L3I1_9PHAE3.100e-2046.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBA7_9PHAE3.110e-2046.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZH7_9PHAE3.120e-2046.15Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KKK1_9PHAE5.740e-2047.06Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JKT7_9PHAE9.360e-2047.13Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig46611contigH-paniculata_contig46611:3..284 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score69.3
Seed ortholog evalue8.3e-10
Seed eggNOG ortholog4558.Sb07g003556.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs37YYP@33090,3GQD7@35493,3IKKZ@38820,3M3FD@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Exons1
Model size282
Cds size219
Stop1
Start0
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930389.967041-UTR-H-paniculata_contig46611:2..651622930389.967041-UTR-H-paniculata_contig46611:2..65Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig46611 3..65 -
1691481269.8723042-UTR-H-paniculata_contig46611:2..651691481269.8723042-UTR-H-paniculata_contig46611:2..65Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig46611 3..65 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930389.9802778-CDS-H-paniculata_contig46611:65..2841622930389.9802778-CDS-H-paniculata_contig46611:65..284Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46611 66..284 -
1691481269.8835711-CDS-H-paniculata_contig46611:65..2841691481269.8835711-CDS-H-paniculata_contig46611:65..284Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46611 66..284 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig46611.11617.1prot_H-paniculata_contig46611.11617.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig46611 66..284 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig46611.11617.1

>prot_H-paniculata_contig46611.11617.1 ID=prot_H-paniculata_contig46611.11617.1|Name=mRNA_H-paniculata_contig46611.11617.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=73bp
EVKEVQEGFNYVDSKWVYKWKCDPQGVIDRAESRTLGKGYSQLEGVDYHA
TFAPTASATSNRLLAVIVCLLD*
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mRNA from alignment at H-paniculata_contig46611:3..284-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig46611.11617.1 ID=mRNA_H-paniculata_contig46611.11617.1|Name=mRNA_H-paniculata_contig46611.11617.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=282bp|location=Sequence derived from alignment at H-paniculata_contig46611:3..284- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAGTAAAAGAGGTGCAAGAGGGATTTAATTATGTGGATTCGAAGTGGGT
GTACAAGTGGAAGTGTGATCCACAGGGCGTGATTGACAGAGCAGAATCTA
GAACGTTGGGGAAAGGATACAGCCAACTAGAAGGTGTTGACTACCATGCG
ACGTTCGCTCCTACAGCATCGGCAACGTCTAACAGACTTTTAGCGGTGAT
CGTGTGTTTGCTTGACTGAGATTTGAGAAAATTCGATGCAAAACAGGCAT
TCGTGCAGTCTGACTTGGACACTGAGATTTAC
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Coding sequence (CDS) from alignment at H-paniculata_contig46611:3..284-

>mRNA_H-paniculata_contig46611.11617.1 ID=mRNA_H-paniculata_contig46611.11617.1|Name=mRNA_H-paniculata_contig46611.11617.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=438bp|location=Sequence derived from alignment at H-paniculata_contig46611:3..284- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAGTAAAAGAGGTGCAAGAGGGATTTAATTATGTGGATTCGAAGTGGGT
GTACAAGTGGAAGTGTGATCCACAGGGCGTGATTGACAGAGCAGAATCTA
GAACGTTGGGGAAAGGATACAGCCAACTAGAAGGTGTTGACTACCATGCG
ACGTTCGCTCCTACAGCATCGGCAACGTCTAACAGACTTTTAGCGGTGAT
CGTGTGTTTGCTTGACTGAGAAGTAAAAGAGGTGCAAGAGGGATTTAATT
ATGTGGATTCGAAGTGGGTGTACAAGTGGAAGTGTGATCCACAGGGCGTG
ATTGACAGAGCAGAATCTAGAACGTTGGGGAAAGGATACAGCCAACTAGA
AGGTGTTGACTACCATGCGACGTTCGCTCCTACAGCATCGGCAACGTCTA
ACAGACTTTTAGCGGTGATCGTGTGTTTGCTTGACTGA
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