prot_H-paniculata_contig46611.11617.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig46611.11617.1
Unique Nameprot_H-paniculata_contig46611.11617.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length73
Homology
BLAST of mRNA_H-paniculata_contig46611.11617.1 vs. uniprot
Match: A0A5N6M0Y2_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6M0Y2_9ASTR)

HSP 1 Score: 76.6 bits (187), Expect = 7.800e-15
Identity = 36/68 (52.94%), Postives = 48/68 (70.59%), Query Frame = 0
Query:    2 VKEVQEGFNYVDSKWVYKWKCDPQGVIDRAESRTLGKGYSQLEGVDYHATFAPTASATSNR-LLAVIV 68
            ++E+ EG   +DSKWVYK K  P G I+R ++R + KGY+Q+EGVDYH TFAP A   + R LLA+ V
Sbjct:   90 IEELPEGKRAIDSKWVYKIKYKPNGEIERYKARLVAKGYTQMEGVDYHDTFAPVAKLVTVRSLLAIAV 157          
BLAST of mRNA_H-paniculata_contig46611.11617.1 vs. uniprot
Match: A0A5N6NJS0_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NJS0_9ASTR)

HSP 1 Score: 75.9 bits (185), Expect = 2.190e-14
Identity = 33/66 (50.00%), Postives = 46/66 (69.70%), Query Frame = 0
Query:    2 VKEVQEGFNYVDSKWVYKWKCDPQGVIDRAESRTLGKGYSQLEGVDYHATFAPTASATSNRLLAVI 67
            ++E+ EG + +DSKWVYK K  P G ++R ++R + KGY+Q+EGVDYH TFAP A   + R L  I
Sbjct:  333 LQELPEGKHAIDSKWVYKIKYKPDGTVERYKARLVTKGYTQIEGVDYHDTFAPVAKLVTVRTLITI 398          
BLAST of mRNA_H-paniculata_contig46611.11617.1 vs. uniprot
Match: A0A5N6NR52_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NR52_9ASTR)

HSP 1 Score: 75.1 bits (183), Expect = 3.960e-14
Identity = 32/71 (45.07%), Postives = 47/71 (66.20%), Query Frame = 0
Query:    2 VKEVQEGFNYVDSKWVYKWKCDPQGVIDRAESRTLGKGYSQLEGVDYHATFAPTASATSNRLLAVIVCLLD 72
            ++++ EG   +DSKWVYK K  P G I+R ++R + KG++Q+EG+DYH TFAP A   + R+L  I    D
Sbjct:   62 LEDLPEGKKPIDSKWVYKIKYKPNGEIERYKARLVAKGFTQMEGIDYHETFAPVAKLVTMRILLTIAVKRD 132          
BLAST of mRNA_H-paniculata_contig46611.11617.1 vs. uniprot
Match: A0A5N6Q2S9_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6Q2S9_9ASTR)

HSP 1 Score: 74.7 bits (182), Expect = 5.570e-14
Identity = 32/66 (48.48%), Postives = 45/66 (68.18%), Query Frame = 0
Query:    2 VKEVQEGFNYVDSKWVYKWKCDPQGVIDRAESRTLGKGYSQLEGVDYHATFAPTASATSNRLLAVI 67
            ++E+  G   +DSKW+YK K  P G ++R ++R + KGY+QLEGVDYH TFAP A   + R L V+
Sbjct:  383 LEELPPGKKAIDSKWIYKVKHKPNGEVERYKARLIAKGYTQLEGVDYHDTFAPVAKLVTMRALLVL 448          
BLAST of mRNA_H-paniculata_contig46611.11617.1 vs. uniprot
Match: A0A5N6M6A7_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6M6A7_9ASTR)

HSP 1 Score: 74.3 bits (181), Expect = 7.590e-14
Identity = 33/71 (46.48%), Postives = 47/71 (66.20%), Query Frame = 0
Query:    2 VKEVQEGFNYVDSKWVYKWKCDPQGVIDRAESRTLGKGYSQLEGVDYHATFAPTASATSNRLLAVIVCLLD 72
            ++E+ EG + +DSKWVYK K  P G I+R ++R + KG++Q+EG+DYH TFAP A   + R L  I    D
Sbjct:  245 LEELPEGKHVIDSKWVYKIKYKPNGDIERYKARLIAKGFTQVEGIDYHDTFAPVAKLVTVRCLLSIAVKRD 315          
BLAST of mRNA_H-paniculata_contig46611.11617.1 vs. uniprot
Match: A0A5N6Q5V3_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6Q5V3_9ASTR)

HSP 1 Score: 74.3 bits (181), Expect = 7.610e-14
Identity = 32/66 (48.48%), Postives = 45/66 (68.18%), Query Frame = 0
Query:    2 VKEVQEGFNYVDSKWVYKWKCDPQGVIDRAESRTLGKGYSQLEGVDYHATFAPTASATSNRLLAVI 67
            ++E+ +G   +DSKWVYK K  P G I+R ++R + KGY+Q+EG+DYH TFAP A   + R L  I
Sbjct:  370 LEELPKGKRTIDSKWVYKIKYKPNGEIERYKARLVAKGYTQMEGIDYHETFAPVAKLVTVRTLLAI 435          
BLAST of mRNA_H-paniculata_contig46611.11617.1 vs. uniprot
Match: UPI001652F407 (uncharacterized protein LOC110905727 n=1 Tax=Helianthus annuus TaxID=4232 RepID=UPI001652F407)

HSP 1 Score: 74.3 bits (181), Expect = 7.650e-14
Identity = 32/66 (48.48%), Postives = 44/66 (66.67%), Query Frame = 0
Query:    2 VKEVQEGFNYVDSKWVYKWKCDPQGVIDRAESRTLGKGYSQLEGVDYHATFAPTASATSNRLLAVI 67
            ++E+  G   +DSKW+YK K  P G IDR ++R + KGY+Q+EGVDYH TFAP A   + R L  +
Sbjct:  892 LEELPSGKKAIDSKWIYKIKHRPDGTIDRYKARLVAKGYTQMEGVDYHDTFAPVAKLVTVRTLLAL 957          
BLAST of mRNA_H-paniculata_contig46611.11617.1 vs. uniprot
Match: A0A5N6NHH8_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NHH8_9ASTR)

HSP 1 Score: 73.9 bits (180), Expect = 1.040e-13
Identity = 36/68 (52.94%), Postives = 48/68 (70.59%), Query Frame = 0
Query:    2 VKEVQEGFNYVDSKWVYKWKCDPQGVIDRAESRTLGKGYSQLEGVDYHATFAPTASATSNR-LLAVIV 68
            ++E+ +G   +DSKWVYK K  P G I+R ++R + KG++QLEGVDYH TFAP A   + R LLAV V
Sbjct:  292 LEELPKGKKAIDSKWVYKIKYKPNGQIERYKARLVAKGFTQLEGVDYHDTFAPVAKLVTVRTLLAVAV 359          
BLAST of mRNA_H-paniculata_contig46611.11617.1 vs. uniprot
Match: UPI0016533A27 (uncharacterized protein LOC110926340 n=1 Tax=Helianthus annuus TaxID=4232 RepID=UPI0016533A27)

HSP 1 Score: 72.8 bits (177), Expect = 2.640e-13
Identity = 34/68 (50.00%), Postives = 48/68 (70.59%), Query Frame = 0
Query:    2 VKEVQEGFNYVDSKWVYKWKCDPQGVIDRAESRTLGKGYSQLEGVDYHATFAPTASATSNR-LLAVIV 68
            ++++ EG   +DSKWVYK K  P G ++R ++R + KG++Q+EGVDYH TFAP A   + R LLAV V
Sbjct:  371 LEDLPEGKRPIDSKWVYKVKYKPNGEVERFKARLVAKGFTQMEGVDYHDTFAPVAKLVTVRTLLAVAV 438          
BLAST of mRNA_H-paniculata_contig46611.11617.1 vs. uniprot
Match: A0A251SY54_HELAN (Putative ribonuclease H-like domain-containing protein n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251SY54_HELAN)

HSP 1 Score: 72.8 bits (177), Expect = 2.670e-13
Identity = 35/68 (51.47%), Postives = 47/68 (69.12%), Query Frame = 0
Query:    2 VKEVQEGFNYVDSKWVYKWKCDPQGVIDRAESRTLGKGYSQLEGVDYHATFAPTASATSNR-LLAVIV 68
            ++ + EG   +DSKWVYK K  P G I+R ++R + KGY+Q+EGVD+H TFAP A   + R LLAV V
Sbjct:  572 LEPLPEGKRAIDSKWVYKLKYKPNGEIERHKARLVAKGYTQMEGVDFHDTFAPVAKLVTVRTLLAVAV 639          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig46611.11617.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5N6M0Y2_9ASTR7.800e-1552.94Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5N6NJS0_9ASTR2.190e-1450.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A5N6NR52_9ASTR3.960e-1445.07Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5N6Q2S9_9ASTR5.570e-1448.48Integrase catalytic domain-containing protein n=1 ... [more]
A0A5N6M6A7_9ASTR7.590e-1446.48Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5N6Q5V3_9ASTR7.610e-1448.48Integrase catalytic domain-containing protein n=1 ... [more]
UPI001652F4077.650e-1448.48uncharacterized protein LOC110905727 n=1 Tax=Helia... [more]
A0A5N6NHH8_9ASTR1.040e-1352.94Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI0016533A272.640e-1350.00uncharacterized protein LOC110926340 n=1 Tax=Helia... [more]
A0A251SY54_HELAN2.670e-1351.47Putative ribonuclease H-like domain-containing pro... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 11..67
e-value: 1.6E-8
score: 34.5

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig46611contigH-paniculata_contig46611:66..284 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig46611.11617.1mRNA_H-paniculata_contig46611.11617.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig46611 3..284 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig46611.11617.1 ID=prot_H-paniculata_contig46611.11617.1|Name=mRNA_H-paniculata_contig46611.11617.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=73bp
EVKEVQEGFNYVDSKWVYKWKCDPQGVIDRAESRTLGKGYSQLEGVDYHA
TFAPTASATSNRLLAVIVCLLD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2