mRNA_H-paniculata_contig4661.11616.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig4661.11616.1 vs. uniprot
Match: D8LQC1_ECTSI (Rab11A, RAB family GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQC1_ECTSI) HSP 1 Score: 402 bits (1032), Expect = 1.220e-131 Identity = 205/218 (94.04%), Postives = 214/218 (98.17%), Query Frame = 2
Query: 506 SGKEDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIQTEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKHVTFENVERWLKELRDHAEANIVVMLVGNKSDLRHLRTVSTEEAMEFAEKHNLAFIETSALDASGVDTAFQRILTEIYRLMSRKTIAANNAAGPNLSQGETIALSSARDDAGSRSKSSCAGSCK 1159
+GKEDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIQTEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKHVTFENVERWLKELRDHAEANIVVML+GNKSDLRHLRTV+ EEAMEFA+KHNLAF+ETSALDASGVD+AFQRILTEIYRLMSRKTIAAN A GP+LS+GETIALSSARDDA +RSKSSCAGSCK
Sbjct: 2 AGKEDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIQTEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKHVTFENVERWLKELRDHAEANIVVMLIGNKSDLRHLRTVTHEEAMEFAKKHNLAFLETSALDASGVDSAFQRILTEIYRLMSRKTIAANTATGPDLSRGETIALSSARDDASNRSKSSCAGSCK 219
BLAST of mRNA_H-paniculata_contig4661.11616.1 vs. uniprot
Match: A0A836CE16_9STRA (Rab11A, rab family GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE16_9STRA) HSP 1 Score: 356 bits (914), Expect = 4.650e-114 Identity = 187/217 (86.18%), Postives = 201/217 (92.63%), Query Frame = 2
Query: 506 SGKEDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIQTEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKHVTFENVERWLKELRDHAEANIVVMLVGNKSDLRHLRTVSTEEAMEFAEKHNLAFIETSALDASGVDTAFQRILTEIYRLMSRKTIAANNAAG-PNLSQGETIALSS-ARDDAGSRSKSSCAG 1150
+GK++EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIQTE K IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKH+TFENVERWLKELRDHAEANIVVMLVGNK DLRHLRTVS EEA EFAEK+ LAFIETSALDASGVDTAFQRILTEIYRLM++K ++A ++ P L QGETIALSS A D AGSRSK++C+G
Sbjct: 2 AGKDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIQTENKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKHITFENVERWLKELRDHAEANIVVMLVGNKCDLRHLRTVSVEEATEFAEKNKLAFIETSALDASGVDTAFQRILTEIYRLMNKKQMSAGGSSPTPALGQGETIALSSGATDKAGSRSKTACSG 218
BLAST of mRNA_H-paniculata_contig4661.11616.1 vs. uniprot
Match: A0A7S2V252_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V252_9STRA) HSP 1 Score: 352 bits (903), Expect = 1.780e-112 Identity = 189/219 (86.30%), Postives = 203/219 (92.69%), Query Frame = 2
Query: 500 MASGKEDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIQTEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKHVTFENVERWLKELRDHAEANIVVMLVGNKSDLRHLRTVSTEEAMEFAEKHNLAFIETSALDASGVDTAFQRILTEIYRLMSRKTIAA--NNAAGPNLSQGETIALSSARDDAGSRS--KSSC 1144
M +GK+DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIQTEGK IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKHVTFENVERWLKELRDHAEANIVVMLVGNKSDLRHLR VSTEEAM FAEK+NLAFIETSALDASGVDTAFQRILTEIYRLMSR+++ A N+A +S+GETI+L++ + D GSRS KS+C
Sbjct: 1 MMAGKDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIQTEGKIIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKHVTFENVERWLKELRDHAEANIVVMLVGNKSDLRHLRAVSTEEAMAFAEKNNLAFIETSALDASGVDTAFQRILTEIYRLMSRRSVLAGGNDAV---ISRGETISLAATQGD-GSRSSSKSNC 215
BLAST of mRNA_H-paniculata_contig4661.11616.1 vs. uniprot
Match: A0A6V0CK96_9STRA (Hypothetical protein n=8 Tax=Bacillariophyta TaxID=2836 RepID=A0A6V0CK96_9STRA) HSP 1 Score: 350 bits (899), Expect = 6.970e-112 Identity = 179/217 (82.49%), Postives = 195/217 (89.86%), Query Frame = 2
Query: 500 MASGKEDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIQTEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKHVTFENVERWLKELRDHAEANIVVMLVGNKSDLRHLRTVSTEEAMEFAEKHNLAFIETSALDASGVDTAFQRILTEIYRLMSRKTIAAN--NAAGPNLSQGETIALSSARDDAGSRSKSSC 1144
MA+ ++EYDYLFK+VLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIQ EGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKH TFENVERWLKELRDHAEANIVVMLVGNKSDLRHLR V T+EAM F+E+HNLAFIETSALDASGVDTAFQRILTEIYRLMSR+ +AA NA GP+L+ G++I+L ++AG K C
Sbjct: 1 MAARVDEEYDYLFKIVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIQAEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKHGTFENVERWLKELRDHAEANIVVMLVGNKSDLRHLRAVETDEAMSFSEQHNLAFIETSALDASGVDTAFQRILTEIYRLMSRRNVAAEEANAGGPSLTAGQSISLGGGNNNAGQGEKKGC 217
BLAST of mRNA_H-paniculata_contig4661.11616.1 vs. uniprot
Match: B5YND5_THAPS (Rab-type small GTPase n=3 Tax=Thalassiosira TaxID=35127 RepID=B5YND5_THAPS) HSP 1 Score: 345 bits (885), Expect = 7.400e-110 Identity = 177/201 (88.06%), Postives = 188/201 (93.53%), Query Frame = 2
Query: 500 MASGKEDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIQTEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKHVTFENVERWLKELRDHAEANIVVMLVGNKSDLRHLRTVSTEEAMEFAEKHNLAFIETSALDASGVDTAFQRILTEIYRLMSRKTIAANNAAG-PNLSQGETIAL 1099
MA+ ++EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIQTEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKH TFENVERWLKELRDHAEANIVVMLVGNKSDLRHLR V T+EAM F+E+HNLAFIETSALDASGVDTAFQRILTEIYRLMSR+ +AA + A P LS G+TI+L
Sbjct: 1 MATRADEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIQTEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKHGTFENVERWLKELRDHAEANIVVMLVGNKSDLRHLRAVETDEAMAFSEQHNLAFIETSALDASGVDTAFQRILTEIYRLMSRRNMAAEDGANAPQLSSGQTISL 201
BLAST of mRNA_H-paniculata_contig4661.11616.1 vs. uniprot
Match: B7GDZ3_PHATC (Predicted protein n=5 Tax=Bacillariophyta TaxID=2836 RepID=B7GDZ3_PHATC) HSP 1 Score: 340 bits (872), Expect = 5.970e-108 Identity = 177/216 (81.94%), Postives = 189/216 (87.50%), Query Frame = 2
Query: 500 MASGKEDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIQTEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKHVTFENVERWLKELRDHAEANIVVMLVGNKSDLRHLRTVSTEEAMEFAEKHNLAFIETSALDASGVDTAFQRILTEIYRLMSRKTIAANNAAGPNLSQGETIALSSARDDAGSRSKSSCA 1147
MAS ++EYDYLFK+VLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIQ EGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKH TFENVERWLKELRDHAEANIVVMLVGNKSDLRHLR V T+EAM F+E+HNLAFIETSALDASGVDTAFQRILTEIYRLMSR+ + A A +S G I+LS +G + K CA
Sbjct: 1 MASRVDEEYDYLFKIVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIQAEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKHGTFENVERWLKELRDHAEANIVVMLVGNKSDLRHLRAVETDEAMAFSEQHNLAFIETSALDASGVDTAFQRILTEIYRLMSRRNMQAEENANAPMSAGHKISLS----QSGDKKKGCCA 212
BLAST of mRNA_H-paniculata_contig4661.11616.1 vs. uniprot
Match: A0A7S0C1Y2_9STRA (Hypothetical protein n=2 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C1Y2_9STRA) HSP 1 Score: 338 bits (867), Expect = 9.680e-107 Identity = 177/218 (81.19%), Postives = 189/218 (86.70%), Query Frame = 2
Query: 500 MASGKEDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIQTEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKHVTFENVERWLKELRDHAEANIVVMLVGNKSDLRHLRTVSTEEAMEFAEKHNLAFIETSALDASGVDTAFQRILTEIYRLMSRKTIAANNAAGPN-LSQGETIALSSARDDAGSRSKSSCAG 1150
M+ +++EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIQ EGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKH TFENVERWLKELRDHAEANIVVMLVGNKSDLRHLR V T+EAM F+E+HNLAFIETSALDASGVDTAFQRILTEIYRLMSR+ I A AA L G+ I L +D + +K C G
Sbjct: 30 MSGPRDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIQAEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKHSTFENVERWLKELRDHAEANIVVMLVGNKSDLRHLRAVETDEAMSFSEQHNLAFIETSALDASGVDTAFQRILTEIYRLMSRRNIQAEEAANATTLGDGQKINL----NDTSTNTKPGCCG 243
BLAST of mRNA_H-paniculata_contig4661.11616.1 vs. uniprot
Match: A0A024TRU3_9STRA (Uncharacterized protein n=11 Tax=Saprolegniaceae TaxID=4764 RepID=A0A024TRU3_9STRA) HSP 1 Score: 333 bits (855), Expect = 2.470e-105 Identity = 178/221 (80.54%), Postives = 192/221 (86.88%), Query Frame = 2
Query: 500 MASGKEDE-YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIQTEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKHVTFENVERWLKELRDHAEANIVVMLVGNKSDLRHLRTVSTEEAMEFAEKHNLAFIETSALDASGVDTAFQRILTEIYRLMSRKTIAANNAAGPNLSQGETIALSS-----ARDDAGSRSKSSC 1144
MA+GK DE YDYLFKVVLIGDSGVGKSNLLSRFTRNEF+LESKSTIGVEFATKSIQ EGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDI+KH TFENVERWLKELRDHA+AN V+MLVGNKSDLRHLR V TEEAM FAEKHNLAF+ETSALDA+GVDTAFQRILTEIY LMSRKT+ A + +L QG I ++S A GS+ KS+C
Sbjct: 1 MATGKADEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATKSIQAEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKHPTFENVERWLKELRDHADANTVIMLVGNKSDLRHLRAVQTEEAMAFAEKHNLAFLETSALDATGVDTAFQRILTEIYNLMSRKTMQAEEHSA-SLPQGNKIEINSDNAPTAAAAKGSKKKSAC 220
BLAST of mRNA_H-paniculata_contig4661.11616.1 vs. uniprot
Match: A0A024GTW1_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GTW1_9STRA) HSP 1 Score: 331 bits (849), Expect = 1.590e-104 Identity = 173/216 (80.09%), Postives = 192/216 (88.89%), Query Frame = 2
Query: 500 MASGKEDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIQTEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKHVTFENVERWLKELRDHAEANIVVMLVGNKSDLRHLRTVSTEEAMEFAEKHNLAFIETSALDASGVDTAFQRILTEIYRLMSRKTIAANNAAGPNLSQGETIALSSARDDAG-SRSKSSC 1144
MAS KED+YDYLFK+VLIGDSGVGKSNLLSRFTRNEF+LESKSTIGVEFATKSI EGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDI+KHVTFENVERWLKELR+HA+AN V+MLVGNKSDLRHLR V TEEAM FAEK+NLAFIETSAL+A GVD+AFQRILTEIY+LMSRKTI A + +L G+ I ++S + + G + KSSC
Sbjct: 1 MASPKEDDYDYLFKIVLIGDSGVGKSNLLSRFTRNEFHLESKSTIGVEFATKSIVAEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKHVTFENVERWLKELREHADANTVIMLVGNKSDLRHLRAVPTEEAMAFAEKNNLAFIETSALEAIGVDSAFQRILTEIYKLMSRKTIQAEESQ-ISLPSGDNIVITSDKTEEGVKKKKSSC 215
BLAST of mRNA_H-paniculata_contig4661.11616.1 vs. uniprot
Match: H6WB88_VAULI (Rab11 family GTPase n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB88_VAULI) HSP 1 Score: 332 bits (852), Expect = 4.020e-104 Identity = 172/213 (80.75%), Postives = 190/213 (89.20%), Query Frame = 2
Query: 512 KEDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIQTEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKHVTFENVERWLKELRDHAEANIVVMLVGNKSDLRHLRTVSTEEAMEFAEKHNLAFIETSALDASGVDTAFQRILTEIYRLMSRKTIAANNAAGPNLSQGETIALSSARDDAGSRSKSSCAG 1150
K++EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFN+ESKSTIGVEFATKSIQTE K IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDI+KH TFEN ERWLKELRDHAE+NIVVMLVGNK DLRHLRTVS EEA EFAEK++LAFIETSALD+SGVDTAFQ+ILTEIY+LM++K ++ N N+ QGE IAL+S D A S S+C+G
Sbjct: 58 KDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNMESKSTIGVEFATKSIQTENKIIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKHSTFENAERWLKELRDHAESNIVVMLVGNKCDLRHLRTVSVEEAKEFAEKNSLAFIETSALDSSGVDTAFQQILTEIYKLMNKKQMSGNGNNSLNIGQGERIALNSGGDKA-SGDGSACSG 269 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4661.11616.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4661.11616.1 >prot_H-paniculata_contig4661.11616.1 ID=prot_H-paniculata_contig4661.11616.1|Name=mRNA_H-paniculata_contig4661.11616.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=221bp MASGKEDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFAback to top mRNA from alignment at H-paniculata_contig4661:493..11510- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4661.11616.1 ID=mRNA_H-paniculata_contig4661.11616.1|Name=mRNA_H-paniculata_contig4661.11616.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=11018bp|location=Sequence derived from alignment at H-paniculata_contig4661:493..11510- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4661:493..11510- >mRNA_H-paniculata_contig4661.11616.1 ID=mRNA_H-paniculata_contig4661.11616.1|Name=mRNA_H-paniculata_contig4661.11616.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1326bp|location=Sequence derived from alignment at H-paniculata_contig4661:493..11510- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |