mRNA_H-paniculata_contig4654.11609.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4654.11609.1
Unique NamemRNA_H-paniculata_contig4654.11609.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig4654.11609.1 vs. uniprot
Match: D7G8N9_ECTSI (Myb-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8N9_ECTSI)

HSP 1 Score: 293 bits (750), Expect = 6.560e-88
Identity = 148/205 (72.20%), Postives = 169/205 (82.44%), Query Frame = 2
Query:  989 KWEVDSEIGAPWDEFEDWLLQDTYSRYAIGSGKHVLWRRMVREVPELMERSPKEARQRWLRLTGRL-------GNEEEQ---LSDGPPLDSFYLQPPVLEEWEEVAGSDGIGSFRGKVFGQRGLADGTAMTTAPVDVDGWRIQDQYVATKCGVVYELGERRRVDLVGQAQSKLLKFAPVTGLALATAFYALTVLSHHVQVEVFVI 1573
            +WE  +E  A W EFEDWLLQDTYSRYAIGSGKHVLWRRMVREVPELMER+P+EAR+RWLRLTGRL       G+  E+   ++  P LD+FY+QPPVLE+WEE+   +G+GSFRG VFGQRGLADGTAMTTAP+D+ G +IQDQYVAT+CGVVYELGERR  DLV QA SK+LK AP T LALA AFYALT LSHH+QVEVFVI
Sbjct:  159 EWEGGAE--AAWTEFEDWLLQDTYSRYAIGSGKHVLWRRMVREVPELMERTPQEARERWLRLTGRLSAGGAEGGSRRERGEVMAGSPALDNFYIQPPVLEQWEEIVEGEGMGSFRGNVFGQRGLADGTAMTTAPIDISGRKIQDQYVATQCGVVYELGERRETDLVSQASSKMLKIAPATVLALAGAFYALTALSHHIQVEVFVI 361          
BLAST of mRNA_H-paniculata_contig4654.11609.1 vs. uniprot
Match: A0A836CN06_9STRA (Myb-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN06_9STRA)

HSP 1 Score: 193 bits (490), Expect = 1.190e-52
Identity = 105/212 (49.53%), Postives = 131/212 (61.79%), Query Frame = 2
Query: 1007 EIGAPWDEFEDWLLQDTYSRYAIGSGKHVLWRRMVREVPELMERSPKEARQRWLRLTGRLGNEEEQ-----------------LSDGPPLDSFYLQPPVLEEWEEVAGSDGIGSFRGKVFGQRGLADGTAMTTAPVDVDGWRIQDQYVATKCGVVYELGERRRVD------LVGQAQSKLLKFAPVTGLALATAFYALTVLSHHVQVEVFVI 1573
            E   PW EFEDWLLQDT++RYAIGSGKHVLW RMV EVPEL+ R+P+EAR+RWL +TGRL ++ +                   S  P +++FYLQPP+L +WEE+      GSF G V G  GLADG  + T  VD+ G R+ DQYV T+CG V+ELG RR  D       +    S     AP+  LA A A    TVL+HHVQ+EVFV+
Sbjct:   21 EADMPWTEFEDWLLQDTFARYAIGSGKHVLWNRMVTEVPELIGRTPQEARRRWLHITGRLTDQRQGGXXXXXXXXXXXXXXXGSSGAPDVETFYLQPPLLHDWEELED----GSFEGSVEGMGGLADGVLVRTRGVDLAGRRVADQYVRTECGAVFELGARRGADDDAATTALAPVASAFAAAAPLLALASAAAVLGATVLTHHVQLEVFVV 228          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4654.11609.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G8N9_ECTSI6.560e-8872.20Myb-like domain-containing protein n=2 Tax=Ectocar... [more]
A0A836CN06_9STRA1.190e-5249.53Myb-like domain-containing protein n=1 Tax=Tribone... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4654contigH-paniculata_contig4654:8689..15477 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-22_002440.1
Exons5
Model size2638
Cds size1422
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930388.589886-UTR-H-paniculata_contig4654:8688..88421622930388.589886-UTR-H-paniculata_contig4654:8688..8842Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4654 8689..8842 +
1691481269.2200425-UTR-H-paniculata_contig4654:8688..88421691481269.2200425-UTR-H-paniculata_contig4654:8688..8842Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4654 8689..8842 +
1622930388.7180004-UTR-H-paniculata_contig4654:14415..154771622930388.7180004-UTR-H-paniculata_contig4654:14415..15477Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4654 14416..15477 +
1691481269.2895617-UTR-H-paniculata_contig4654:14415..154771691481269.2895617-UTR-H-paniculata_contig4654:14415..15477Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4654 14416..15477 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930388.6101613-CDS-H-paniculata_contig4654:8842..91521622930388.6101613-CDS-H-paniculata_contig4654:8842..9152Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4654 8843..9152 +
1691481269.2303374-CDS-H-paniculata_contig4654:8842..91521691481269.2303374-CDS-H-paniculata_contig4654:8842..9152Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4654 8843..9152 +
1622930388.628088-CDS-H-paniculata_contig4654:10655..112561622930388.628088-CDS-H-paniculata_contig4654:10655..11256Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4654 10656..11256 +
1691481269.2389622-CDS-H-paniculata_contig4654:10655..112561691481269.2389622-CDS-H-paniculata_contig4654:10655..11256Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4654 10656..11256 +
1622930388.65148-CDS-H-paniculata_contig4654:11843..120211622930388.65148-CDS-H-paniculata_contig4654:11843..12021Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4654 11844..12021 +
1691481269.2473676-CDS-H-paniculata_contig4654:11843..120211691481269.2473676-CDS-H-paniculata_contig4654:11843..12021Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4654 11844..12021 +
1622930388.6724496-CDS-H-paniculata_contig4654:13601..137511622930388.6724496-CDS-H-paniculata_contig4654:13601..13751Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4654 13602..13751 +
1691481269.2600079-CDS-H-paniculata_contig4654:13601..137511691481269.2600079-CDS-H-paniculata_contig4654:13601..13751Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4654 13602..13751 +
1622930388.694888-CDS-H-paniculata_contig4654:14232..144151622930388.694888-CDS-H-paniculata_contig4654:14232..14415Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4654 14233..14415 +
1691481269.280972-CDS-H-paniculata_contig4654:14232..144151691481269.280972-CDS-H-paniculata_contig4654:14232..14415Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4654 14233..14415 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4654.11609.1prot_H-paniculata_contig4654.11609.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4654 8843..14415 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4654.11609.1

>prot_H-paniculata_contig4654.11609.1 ID=prot_H-paniculata_contig4654.11609.1|Name=mRNA_H-paniculata_contig4654.11609.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=474bp
MATARTCPSSFPIAVVLVLALRESLLAGGFVVKAPVPLQHLQQQQQQQQH
SCSTVLDGSAAAAAAAVPRPTRRRCRRLGGSASLGAHDDGETPAVSTSLS
GLEGKTRRGSQHHTSSTACYLAPPSNGPTQDVASASASAAAAAVAAVGGT
TTERSHNSASSGGEGKGAGLNSHTAVAVSTPTTSVSASTDGQQSRHTAAA
AAVAVVGEIAETDQGEEQEAGGRVGVVLVGGQGQGPNGFGVVFEKGQEAQ
GGAVAVGGVSMSSEASPLGADAARTRGRKWEVDSEIGAPWDEFEDWLLQD
TYSRYAIGSGKHVLWRRMVREVPELMERSPKEARQRWLRLTGRLGNEEEQ
LSDGPPLDSFYLQPPVLEEWEEVAGSDGIGSFRGKVFGQRGLADGTAMTT
APVDVDGWRIQDQYVATKCGVVYELGERRRVDLVGQAQSKLLKFAPVTGL
ALATAFYALTVLSHHVQVEVFVI*
back to top

mRNA from alignment at H-paniculata_contig4654:8689..15477+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4654.11609.1 ID=mRNA_H-paniculata_contig4654.11609.1|Name=mRNA_H-paniculata_contig4654.11609.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6789bp|location=Sequence derived from alignment at H-paniculata_contig4654:8689..15477+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCAGCAGTTGCCGCATGCACAGCTACGTGCCTCGTGCGGTCCCTGGTAG TACTCACTTAGTGCTTTCAGGAAGCAACAGTCTGTGTGTCATAACTCCCT GATTGTACGGGGAAAACAGGCGGCAAAGTTCCCTTGCATAACTTGGGGGA AAACATGGCTACTGCCAGGACCTGTCCCTCGTCCTTTCCTATTGCGGTGG TATTGGTTCTGGCTCTGCGAGAGAGCCTGCTTGCCGGCGGGTTTGTTGTT AAAGCGCCAGTTCCACTTCAACATCTACAGCAGCAGCAGCAGCAACAGCA GCATTCATGTTCCACTGTTCTCGATGGTTCGGCTGCTGCTGCTGCTGCTG CTGTGCCACGACCAACGCGTCGTCGATGCCGACGGCTTGGCGGGAGCGCG TCGCTAGGCGCACATGATGATGGAGAAACACCTGCTGTCAGTACTAGCCT AAGCGGTTTGGAAGGTATTGTACTGTCTGTACTGACTTGTTTTTCACCAC TGGAATCTAACCTTGCGCGTTGTGTCTGTACTGTATTTTTCGTATTTCGC CATTAGGGTACAAGCGGAACATTGTTTTGCGAGCTGTGTGTGTGTGTATG TAGGGGGGGGGAGGGGCGGAGGGCTAAGTGGACCTCCTCGAAAAATTGGC ACGTGCGTTTTGGATGGGTATTAAACTTTTGTGCTTTTTGCCAGAGATGA TCCGGGAAGATGGCCATCGTTACGCATGTTTTGTTTTGCGCTGTCTTAGG TATACATGCGACGGCCATCCTCGAGAATATACGAATGTGTTAAGAATATG GGCGATCGCGGACGGTGAATTAACGTACCCCATGGTGTCAATAGTCAAGT CTAGTGTTGCAAGCCAGGAAGCCTATGATTTACCCGTTGAAGGACACGGC GTCAATAACTGTGTTCACCAACGTCTTACCGAAGCTTGTTACCCGAACGG CAGGCAGTGCAACAGACATTTACAATACAGACTACAGTGTACCGCGGTCA TTGCCCCTCCTCAACTCCATATGTAAGTCACTCTGCATGCATGTACTTTA GTGTAGTATGCAATGTTTTCACGCCCTGGAGCCATATGACTAGATCCCCA GTTACTCGAAACCAACTTCACCTTGTGCGGTTAAAATTCGTGAAAAGAAA TTGTTATAGTCCTTCGACCGTGCCTCGTTTCGGAACAGATATAGAGACAT CGAGGTTCATGGAGGGAAAAGGGAGAGGCCGATAAAAACTAAATACCCAG GAACTGATGGCAATAAGCAGCAGTCTCGATACAAGGGAATAAGTACAGTA ATGCATTTGACAGAGGAGAAAGAATTCTATATACCAAGTATAACGTTGCG ATAACATAATATCTGCCAATTGCCTAGGACAACTTCATCAGCAGGACAGG ATCGACAACACCATGCGAACATGGTTTGGGGAAAAAAATGGAAGAGAAAA AGTGTTGGAACAAAATAGTCTAACATGGATTAGAAAACATGACCAATTAA TCGCAAGCAAAGCGTGGGTATGTACAAGCAGCCTTAGCTGGTCGGTGGGT GGATTATGACAGTAGCTAATTTTATACCCAAAATGCCACAAGGCAAAATT CGTTGTTGCATTATCCGTTGTCGTACTTAGCTCTGCTGACTCCGTTGTAC AACGATGGACAGCAGTAGTTCTAGCACGTGGCGCATAGTCTGACATACCA AGCAAATGGCCTGTCAGCGTCTTGTCTTCACTTCCCCGCGACGAAAAGAA CGATATCAGCCTTGCCCTTTTTTGCGCACGGAATGTCCCCAGCCGTTCCC CGCCTACAAATTACTACCGTTGTTTGTAATTATAGTAAAAGCCGAACTGG CTCTTACAAATTCGAAGTTCCTCAAACTTAACATGTTTCATTTGTTCCAT TCCCAACCTGGTTTTAAACCACGCTAATTAAATTAGAATCATTTATGAAT GTACCTATATACCACAGGCAAGACTAGGCGAGGGTCGCAGCATCACACGT CGTCGACCGCATGTTATTTAGCGCCACCCTCAAACGGTCCGACACAAGAC GTGGCATCAGCATCAGCATCAGCAGCAGCAGCAGCAGTAGCAGCCGTCGG AGGCACCACCACCGAACGATCACACAACTCAGCAAGTTCAGGGGGAGAGG GAAAAGGAGCAGGACTAAATTCACATACCGCCGTGGCCGTTTCCACTCCC ACCACGAGCGTCAGTGCTAGTACCGACGGGCAACAAAGTCGCCACACAGC AGCAGCGGCAGCAGTAGCAGTAGTGGGCGAAATAGCGGAAACCGACCAAG GAGAAGAGCAAGAAGCAGGGGGCCGGGTAGGCGTCGTGCTGGTGGGGGGT CAAGGTCAGGGTCCGAATGGGTTTGGGGTTGTGTTTGAGAAGGGACAGGA GGCACAAGGAGGGGCCGTAGCGGTGGGAGGGGTGAGCATGTCTTCGGAAG CCTCGCCGCTAGGCGCCGACGCCGCCAGGACTCGGGGTCGGAAATGGGAG GTGGACTCGGAGATTGGGGCACCGTGGGACGAGTTCGAAGATTGGTTATT GCAGGACACCTATTCGAGGTGATTTTGTTATCTAATGACAATTAATCGCG AGCTCTAAGGATGATTGGGAGGATCCATAAGGGCTGTAGGAGGTACCTCT CTTTAGAGCAATCGCTTGTTATCGGAGCGAAAAAGTCGCCCGGTGAAAAA GTAGAGTTTGGACATTGTTTTTTTCATGCTTGAAATAGATTACATGGCAC TAAGTCGGGCGAGCGCGCTTCCAGTACGTCAGTCTTTTTGCGCCCTTTGT CTGCTCACCATGACTGTACGCACCAAATCTGTTTGAGTACGCCCGTCTTT TTCCGCCACCGTTGTTTGTCAACCATGACTGCACACACCACAGCCTTTTT TGTCTCGCAATACAGATATCGAACGCTATATGAGTATCACAAACATGATT CTCTCACTGTGCTTATGGAATGCAGTAATGCTGAAAAGGTTTATGGTGGC CGTGCTGGTTGCGTTAGGGTTAGGATAGGGGTGCGAAAGAGACACAGATA GATATCAGTTTCAGATATCGAGCTAGAGAGTAGGCAACCGCATTGTGGTG CATTTCCAACCAAAATTTGGACCGTCCTCATCCTGCTCGGATGTTTGGTC GTTAGGTACGCGATCGGATCGGGGAAGCACGTGCTCTGGCGACGAATGGT CCGAGAGGTTCCGGAACTGATGGAACGGTCCCCAAAGGAGGCGCGGCAGA GGTGGTTGCGACTTACGGGACGGTTGGGCAATGAGGAGGAGCAGCTGTCT GACGGCCCTCCACTGGATTCCTTTTACTTGCAGGTTTGTTGTGATGCGAA TATTATTACAGCTCGGGAGAAGGTCGGTGAAGACCGCCGCGTTTTTTTGG CACTGTGGCTAAACGTGGCATCGCGAATATGCTTGGCATGAAGCCCCTTC CAGACGCCGTTCGAAACGGTATTTATGATTGACATTGTGGCAGATCCTTC TTGTCACCTTGGTGAAGCCTCAGATTTTATAGTACGGGCGGACCTCGAGA GATTTCTCTACGTTTGAGAACCAAAGGTTGAGTTCAAGATTGATGAATCT GTAGAGGTGGTACATCACTGGAGAATTAATCGTTTTCCCGAGCTATGAAA TTTATCTCTCACTCGTGCACACGCCTGCAACAGAGCTGTAGCAGTATAAC CAGCTCAATATAAGAAATTTTCATGGTCGGGGAAGATCCTTCTTTTAAGG GAGTTAAACCTTGATCCGAGCTGGAGGAAACCTTGTTATATATGTAGGAA TTAGTATGGGTCAATAGTTTGGTCGGCACAGTGTCCGAAGGTAAATTCTA AAATATTCATGACGTGAAAGATGCTCGAATTATTGTAATATAGCTTCTTT GTGAAGTTTCCTAATTTAGCTGGCAATGCTTTGCATGCATACAAGTCAGG CGATACGTGAAACGACCGTTTGTGGTTTGTTGGGATTTTTTGTTATCGTG ACCCGTTGGACGCCGGAGTTCACTTCCGAACATGAACTAAATATGACAAA TCGTCGAGAATACTACTGTACTATGATCATGTTAAGGGGCGTTACGTAAC ATTTTCTTAGTGGAGTAGGGTCACATTTTCATGTATTGATTACCGTAGAG TGCTCTCTGAGCGCCCCTGGGGCGATTTTTTTCCATATGCGATGGATTAT CTCGAAAGCTACGGTGCTAGCTAGTGACACCGAAAGTTGTGTCGTTGAAA AGGTCGCGTCGAGATCTGTCATTAGATAGATGTGCTATTTCTAATACGGA TGTACTTTGTTTTGGACAAAATCGGGTCTGAAAAACAAGTGCACTCAGGG CATTCGGAGGGCGCTCTACGCGATGCCAGTTTTGGTGCTGTTCTTTGTAC GCTCTATGAAGAAGTGTGTAGTAGGGCTTACTCCGTCACCAACGAAATAG TATGACGGAGTTACAATCTGAATACGGCGGCGAAACAGGATGCTGGTTTC GTCGGGTCACCGGGGGGGGGGGGGGGGGTACAGTATCACTTTCGTGTTTA CTGATTGTAGACAAACGTAACATGACCTAGAAGTGAACACTAGACTTGAC AGGAATTCCCACGTACCGGACTTGGCATCTGCCGTTCAGTCACCCATCAA CTCGCTTTATTACTGTTACCACGATATATAGCACTGTATTCATGGTACTC TGCTGAGGTGGAGCATCTCATGCTCTATAATCATGGCTGTGTACTTTTTG TGTATTAGGTGAAGTAGAACAAACGAGAATGAGGGATCGTTCATCTTCTG TTTTCCCAGAAATTATCCACCAGATGGGAAAACGCCACGTGGCCCTAGGA TCAATTGCCGCAACCGGTTTTCTTTTATGTTCGTTTGGCTTTGGCTTTTT TTCTATCTCCCAGCCGCCCGTATTGGAGGAGTGGGAGGAAGTTGCCGGGA GCGACGGGATAGGATCATTCCGCGGAAAGGTCTTCGGACAGCGAGGATTA GCGGACGGAACGGCGATGACTACGGCCCCGGTCGATGTCGACGGCTGGCG AATCCAAGATCAGGTGATGGCTGGATTTAATTTGACTAGATGGGAGCGGG GCTTACGTGTAAGAAATGGAGAATTATTTCGATATTTGATCGCGATTGCC TTCTCTTTTGATTCGTGGTGATATTGATATTTTGGATTAAACTTCCTGAA AGGTGAACATTCGTAGTTATGTTTTTTTGCTGAGATGATTTTTTTTCGTC GAAAATCACATATTTTCCTCTCTGCTTTGTTTAGTCGAAGCGCTCAAGAG CAGCGTCTTGGACGAACAAAGCTCGATTTTTTCTCTCATCACAAACTCCA GTCATCCGATTTCATTTGATATTCTCTTCCTTGTATTGAATATTCTTAAC ATGTCCCTTTTTGTTTCCATGATAGTTGTTCGGTTGTCCGCCCTTTGTTT ATCCCTGCCCCTGACACATGGGCCATTTTTCTCGTTTTGTGCTGTTTTTC TTCCCCCTCTCTTGTTTTTGCTCTTCGTTGTTAATCGACCCCAGTACGTG GCGACAAAATGTGGAGTAGTGTACGAGCTGGGAGAGCGACGACGAGTCGA CTTGGTCGGCCAGGCCCAGTCGAAACTGTTGAAGTTTGCTCCTGTCACGG GGTTGGCATTAGCCACTGCATTTTACGCTCTTACGGTGCTCTCGCACCAC GTTCAGGTCGAAGTTTTCGTTATCTAACTTGGTTTTGTTTTTTCCCATTG TGTTCATGTGTCCGTGTATTGTAAAGGAATTGATGGCAATCAATACCACA GTGCGAAGAAGTTGTGATGAAAGAAGTAGTACGTTCTGCTCACTCATCTG AAAGATTGAACTACTGGATGGTATTTTTTGTCGGGGGGGGGGGGGGATGC AAGCAAAGATGGACACACACGGTGGATACACCTTTCGGCGAGGCATAACA AAGTGACACAGGTAGATGTACGATGGATGATTCAAGCTTGATTTCGTCAC TCTGCATAACAATTAAGCATAATGTGTGTATGACGAATTTGCGGATGTTG ACTATTTCTGAAAAGAGAAAAATTTCAGTATGGCGGGTGATTATATTTTT GCCTTTTTACGCCATTGCGTAAATTTGGGGTACTGTACGATGTCATTGTG TCCTGTACGTAAGTGCTTGAGATATACACAATTGGATCTTTTGCGAAACA CTGGTTGGTATCCCCCCTCCCCAGCCATCGCGTCCTCCTTTATGCTTTCT CTCCGCCTATAAATATCTTTAGCTGCCGCTGCTGTATGTAATATTTAGTC ACATTGTGTACCATCGATCTGTATTCCCGCCCCAGGCGAACGACTACTCG TGCTTGACGTTTGTTGAATGTACCCGTCGGTTCTGTAGAGAGAGAGGGAA AGAGTCTCTGTAGTTGCTCGATTGGTCAATTGTTTGAAAGGGCAGATATG ATGGCGTTAATGTTGGTTTTTTAATCCTTAGGGCAGTACTGGCTTCCTCG TAATAAATTGCATGTTTCATGCATTTTTTCACTGTGGCACCACAGTGAGC CGGGCATCTAGGGCAAAACAACGGTACATTTTATGAGCAATATGGGCAGG ATCGTGGAACAGTAGCGCTACAATCAATGCGACATGGCTTTGGGAATTCC CACGATACGTACATTTGGCTCAGCTTGTCGCTCCCATGGCGTAGCATCGT AAAAGAACAACCAACCACGGACCTACGCCCGAACGGGTAGGGTAGCTCGT GTACTGAGCATGACTGGAAGTCTAGTCAGAGGTTTTTAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig4654:8689..15477+

>mRNA_H-paniculata_contig4654.11609.1 ID=mRNA_H-paniculata_contig4654.11609.1|Name=mRNA_H-paniculata_contig4654.11609.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2844bp|location=Sequence derived from alignment at H-paniculata_contig4654:8689..15477+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTACTGCCAGGACCTGTCCCTCGTCCTTTCCTATTGCGGTGGTATT
GGTTCTGGCTCTGCGAGAGAGCCTGCTTGCCGGCGGGTTTGTTGTTAAAG
CGCCAGTTCCACTTCAACATCTACAGCAGCAGCAGCAGCAACAGCAGCAT
TCATGTTCCACTGTTCTCGATGGTTCGGCTGCTGCTGCTGCTGCTGCTGT
GCCACGACCAACGCGTCGTCGATGCCGACGGCTTGGCGGGAGCGCGTCGC
TAGGCGCACATGATGATGGAGAAACACCTGCTGTCAGTACTAGCCTAAGC
GGTTTGGAAGATGGCTACTGCCAGGACCTGTCCCTCGTCCTTTCCTATTG
CGGTGGTATTGGTTCTGGCTCTGCGAGAGAGCCTGCTTGCCGGCGGGTTT
GTTGTTAAAGCGCCAGTTCCACTTCAACATCTACAGCAGCAGCAGCAGCA
ACAGCAGCATTCATGTTCCACTGTTCTCGATGGTTCGGCTGCTGCTGCTG
CTGCTGCTGTGCCACGACCAACGCGTCGTCGATGCCGACGGCTTGGCGGG
AGCGCGTCGCTAGGCGCACATGATGATGGAGAAACACCTGCTGTCAGTAC
TAGCCTAAGCGGTTTGGAAGGCAAGACTAGGCGAGGGTCGCAGCATCACA
CGTCGTCGACCGCATGTTATTTAGCGCCACCCTCAAACGGTCCGACACAA
GACGTGGCATCAGCATCAGCATCAGCAGCAGCAGCAGCAGTAGCAGCCGT
CGGAGGCACCACCACCGAACGATCACACAACTCAGCAAGTTCAGGGGGAG
AGGGAAAAGGAGCAGGACTAAATTCACATACCGCCGTGGCCGTTTCCACT
CCCACCACGAGCGTCAGTGCTAGTACCGACGGGCAACAAAGTCGCCACAC
AGCAGCAGCGGCAGCAGTAGCAGTAGTGGGCGAAATAGCGGAAACCGACC
AAGGAGAAGAGCAAGAAGCAGGGGGCCGGGTAGGCGTCGTGCTGGTGGGG
GGTCAAGGTCAGGGTCCGAATGGGTTTGGGGTTGTGTTTGAGAAGGGACA
GGAGGCACAAGGAGGGGCCGTAGCGGTGGGAGGGGTGAGCATGTCTTCGG
AAGCCTCGCCGCTAGGCGCCGACGCCGCCAGGACTCGGGGTCGGAAATGG
GAGGTGGACTCGGAGATTGGGGCACCGTGGGACGAGTTCGAAGATTGGTT
ATTGCAGGACACCTATTCGAGGCAAGACTAGGCGAGGGTCGCAGCATCAC
ACGTCGTCGACCGCATGTTATTTAGCGCCACCCTCAAACGGTCCGACACA
AGACGTGGCATCAGCATCAGCATCAGCAGCAGCAGCAGCAGTAGCAGCCG
TCGGAGGCACCACCACCGAACGATCACACAACTCAGCAAGTTCAGGGGGA
GAGGGAAAAGGAGCAGGACTAAATTCACATACCGCCGTGGCCGTTTCCAC
TCCCACCACGAGCGTCAGTGCTAGTACCGACGGGCAACAAAGTCGCCACA
CAGCAGCAGCGGCAGCAGTAGCAGTAGTGGGCGAAATAGCGGAAACCGAC
CAAGGAGAAGAGCAAGAAGCAGGGGGCCGGGTAGGCGTCGTGCTGGTGGG
GGGTCAAGGTCAGGGTCCGAATGGGTTTGGGGTTGTGTTTGAGAAGGGAC
AGGAGGCACAAGGAGGGGCCGTAGCGGTGGGAGGGGTGAGCATGTCTTCG
GAAGCCTCGCCGCTAGGCGCCGACGCCGCCAGGACTCGGGGTCGGAAATG
GGAGGTGGACTCGGAGATTGGGGCACCGTGGGACGAGTTCGAAGATTGGT
TATTGCAGGACACCTATTCGAGGTACGCGATCGGATCGGGGAAGCACGTG
CTCTGGCGACGAATGGTCCGAGAGGTTCCGGAACTGATGGAACGGTCCCC
AAAGGAGGCGCGGCAGAGGTGGTTGCGACTTACGGGACGGTTGGGCAATG
AGGAGGAGCAGCTGTCTGACGGCCCTCCACTGGATTCCTTTTACTTGCAG
GTACGCGATCGGATCGGGGAAGCACGTGCTCTGGCGACGAATGGTCCGAG
AGGTTCCGGAACTGATGGAACGGTCCCCAAAGGAGGCGCGGCAGAGGTGG
TTGCGACTTACGGGACGGTTGGGCAATGAGGAGGAGCAGCTGTCTGACGG
CCCTCCACTGGATTCCTTTTACTTGCAGCCGCCCGTATTGGAGGAGTGGG
AGGAAGTTGCCGGGAGCGACGGGATAGGATCATTCCGCGGAAAGGTCTTC
GGACAGCGAGGATTAGCGGACGGAACGGCGATGACTACGGCCCCGGTCGA
TGTCGACGGCTGGCGAATCCAAGATCAGCCGCCCGTATTGGAGGAGTGGG
AGGAAGTTGCCGGGAGCGACGGGATAGGATCATTCCGCGGAAAGGTCTTC
GGACAGCGAGGATTAGCGGACGGAACGGCGATGACTACGGCCCCGGTCGA
TGTCGACGGCTGGCGAATCCAAGATCAGTACGTGGCGACAAAATGTGGAG
TAGTGTACGAGCTGGGAGAGCGACGACGAGTCGACTTGGTCGGCCAGGCC
CAGTCGAAACTGTTGAAGTTTGCTCCTGTCACGGGGTTGGCATTAGCCAC
TGCATTTTACGCTCTTACGGTGCTCTCGCACCACGTTCAGGTCGAAGTTT
TCGTTATCTAATACGTGGCGACAAAATGTGGAGTAGTGTACGAGCTGGGA
GAGCGACGACGAGTCGACTTGGTCGGCCAGGCCCAGTCGAAACTGTTGAA
GTTTGCTCCTGTCACGGGGTTGGCATTAGCCACTGCATTTTACGCTCTTA
CGGTGCTCTCGCACCACGTTCAGGTCGAAGTTTTCGTTATCTAA
back to top