mRNA_H-paniculata_contig4624.11556.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4624.11556.1
Unique NamemRNA_H-paniculata_contig4624.11556.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig4624.11556.1 vs. uniprot
Match: D7FRY1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRY1_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 1.340e-32
Identity = 56/58 (96.55%), Postives = 58/58 (100.00%), Query Frame = 1
Query:    1 RGGLGMTEALLELLPDSPVYHVGMYRNPGSNIPVQYYNRLPKGHPSDVALVLDPVIAS 174
            RGGLGMTEALLELLPDSPVYHVGMYRNPGSNIPVQYYNRLPKGHPSDVAL+LDP+IAS
Sbjct:   84 RGGLGMTEALLELLPDSPVYHVGMYRNPGSNIPVQYYNRLPKGHPSDVALILDPIIAS 141          
BLAST of mRNA_H-paniculata_contig4624.11556.1 vs. uniprot
Match: A0A835YL27_9STRA (Uracil phosphoribosyltransferase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL27_9STRA)

HSP 1 Score: 102 bits (253), Expect = 3.550e-25
Identity = 44/58 (75.86%), Postives = 55/58 (94.83%), Query Frame = 1
Query:    1 RGGLGMTEALLELLPDSPVYHVGMYRNPGSNIPVQYYNRLPKGHPSDVALVLDPVIAS 174
            RGGLGMT+A+LELLP++PVYH+GMYRNPGS++P+QYYNRLPKG   DVA++LDP+IAS
Sbjct:  100 RGGLGMTDAMLELLPNAPVYHIGMYRNPGSSMPIQYYNRLPKGQSCDVAILLDPIIAS 157          
BLAST of mRNA_H-paniculata_contig4624.11556.1 vs. uniprot
Match: A0A7S2S8E3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S8E3_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 4.170e-17
Identity = 37/58 (63.79%), Postives = 48/58 (82.76%), Query Frame = 1
Query:    1 RGGLGMTEALLELLPDSPVYHVGMYRNPGSNIPVQYYNRLPKGHPSDVALVLDPVIAS 174
            R GLGM + +LELLP++ V+H+GMYR  GS+IPVQYYNRLP+   +DV+ VLDP+IAS
Sbjct:   81 RAGLGMVDGMLELLPNAAVHHIGMYRMQGSDIPVQYYNRLPRDAVADVSFVLDPLIAS 138          
BLAST of mRNA_H-paniculata_contig4624.11556.1 vs. uniprot
Match: A0A7R9WS49_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WS49_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 2.230e-16
Identity = 39/58 (67.24%), Postives = 48/58 (82.76%), Query Frame = 1
Query:    1 RGGLGMTEALLELLPDSPVYHVGMYRNPGSNIPVQYYNRLPKGHPSDVALVLDPVIAS 174
            R GLGM++++LELLP + VYH+GMYR PGS  PVQY+NRLP+   SD A+VLDPVIAS
Sbjct:  130 RSGLGMSDSMLELLPKASVYHIGMYRIPGS-APVQYFNRLPRKCASDAAIVLDPVIAS 186          
BLAST of mRNA_H-paniculata_contig4624.11556.1 vs. uniprot
Match: A0A3M6VGI5_9STRA (Uracil phosphoribosyltransferase n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VGI5_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 6.950e-16
Identity = 35/58 (60.34%), Postives = 47/58 (81.03%), Query Frame = 1
Query:    1 RGGLGMTEALLELLPDSPVYHVGMYRNPGSNIPVQYYNRLPKGHPSDVALVLDPVIAS 174
            R GLGM E +L++LPD+ V+H+GMYRN  S +PVQYYN+LPK    DVA++L+PVIA+
Sbjct:   94 RAGLGMVEPMLDVLPDATVHHIGMYRNKQSLVPVQYYNKLPKECNVDVAIILEPVIAT 151          
BLAST of mRNA_H-paniculata_contig4624.11556.1 vs. uniprot
Match: A0A8K1CH49_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CH49_PYTOL)

HSP 1 Score: 77.0 bits (188), Expect = 9.300e-16
Identity = 36/58 (62.07%), Postives = 47/58 (81.03%), Query Frame = 1
Query:    1 RGGLGMTEALLELLPDSPVYHVGMYRNPGSNIPVQYYNRLPKGHPSDVALVLDPVIAS 174
            R GLGM E +L+LLP++ V+H+GMYRN  S +PVQYYN+LPK    DVA+VL+PVIA+
Sbjct:   94 RAGLGMVEPMLDLLPNAAVHHIGMYRNKHSLLPVQYYNKLPKQCDLDVAIVLEPVIAT 151          
BLAST of mRNA_H-paniculata_contig4624.11556.1 vs. uniprot
Match: G4ZCN1_PHYSP (Uracil phosphoribosyltransferase (Fragment) n=12 Tax=Phytophthora TaxID=4783 RepID=G4ZCN1_PHYSP)

HSP 1 Score: 76.6 bits (187), Expect = 1.060e-15
Identity = 35/58 (60.34%), Postives = 48/58 (82.76%), Query Frame = 1
Query:    1 RGGLGMTEALLELLPDSPVYHVGMYRNPGSNIPVQYYNRLPKGHPSDVALVLDPVIAS 174
            R GLGM E +L++LP++ V+H+GMYRN  S +PVQYYN+LPK   +DVA+VL+PVIA+
Sbjct:   94 RAGLGMVEPMLDVLPNATVHHIGMYRNKQSLLPVQYYNKLPKECNADVAIVLEPVIAT 151          
BLAST of mRNA_H-paniculata_contig4624.11556.1 vs. uniprot
Match: A0A5D6XMY6_9STRA (Uracil phosphoribosyltransferase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XMY6_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 1.320e-15
Identity = 36/58 (62.07%), Postives = 47/58 (81.03%), Query Frame = 1
Query:    1 RGGLGMTEALLELLPDSPVYHVGMYRNPGSNIPVQYYNRLPKGHPSDVALVLDPVIAS 174
            R GLGM E +L+LLP++ V+H+GMYRN  S +PVQYYN+LPK    DVA+VL+PVIA+
Sbjct:   94 RAGLGMVEPMLDLLPNATVHHIGMYRNKHSLLPVQYYNKLPKECNVDVAIVLEPVIAT 151          
BLAST of mRNA_H-paniculata_contig4624.11556.1 vs. uniprot
Match: A0A7S0AQP2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AQP2_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 1.370e-15
Identity = 38/58 (65.52%), Postives = 48/58 (82.76%), Query Frame = 1
Query:    1 RGGLGMTEALLELLPDSPVYHVGMYRNPGSNIPVQYYNRLPKGHPSDVALVLDPVIAS 174
            R GLGMTE++LELLP++ V+H+GMYR   + +PVQYYNRLPK   SDVA VLDPV+A+
Sbjct:   79 RSGLGMTESMLELLPNAGVHHIGMYRQ--NLMPVQYYNRLPKKCESDVAYVLDPVMAT 134          
BLAST of mRNA_H-paniculata_contig4624.11556.1 vs. uniprot
Match: A0A7S3P6D6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P6D6_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 1.670e-15
Identity = 35/58 (60.34%), Postives = 46/58 (79.31%), Query Frame = 1
Query:    1 RGGLGMTEALLELLPDSPVYHVGMYRNPGSNIPVQYYNRLPKGHPSDVALVLDPVIAS 174
            R GLGM +A+LELLP++ ++H+GMY+ PG + PVQY+NRLPK    DVA VLDP IA+
Sbjct:  103 RSGLGMVDAMLELLPNAEIHHIGMYKAPGQSHPVQYFNRLPKKCTVDVAYVLDPCIAT 160          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4624.11556.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRY1_ECTSI1.340e-3296.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YL27_9STRA3.550e-2575.86Uracil phosphoribosyltransferase-domain-containing... [more]
A0A7S2S8E3_9STRA4.170e-1763.79Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7R9WS49_9STRA2.230e-1667.24Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A3M6VGI5_9STRA6.950e-1660.34Uracil phosphoribosyltransferase n=2 Tax=Peronospo... [more]
A0A8K1CH49_PYTOL9.300e-1662.07Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
G4ZCN1_PHYSP1.060e-1560.34Uracil phosphoribosyltransferase (Fragment) n=12 T... [more]
A0A5D6XMY6_9STRA1.320e-1562.07Uracil phosphoribosyltransferase n=1 Tax=Pythium b... [more]
A0A7S0AQP2_9STRA1.370e-1565.52Hypothetical protein (Fragment) n=1 Tax=Minutocell... [more]
A0A7S3P6D6_9STRA1.670e-1560.34Hypothetical protein (Fragment) n=1 Tax=Amphora co... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4624contigH-paniculata_contig4624:15026..15199 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.5
Seed ortholog evalue2.4e-22
Seed eggNOG ortholog2880.D7FRY1
KEGG rclassRC00063
KEGG koko:K00761
KEGG ReactionR00966
KEGG Pathwayko00240,ko01100,map00240,map01100
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.UMP salvage
EggNOG OGsCOG0572@1,KOG4203@2759
Ec32 ortholog descriptionUracil phosphoribosyltransferase
Ec32 orthologEc-03_003570.1
EC2.4.2.9
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size174
Cds size159
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930382.0648918-UTR-H-paniculata_contig4624:15025..150401622930382.0648918-UTR-H-paniculata_contig4624:15025..15040Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4624 15026..15040 +
1691481266.3614705-UTR-H-paniculata_contig4624:15025..150401691481266.3614705-UTR-H-paniculata_contig4624:15025..15040Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4624 15026..15040 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930382.07932-CDS-H-paniculata_contig4624:15040..151991622930382.07932-CDS-H-paniculata_contig4624:15040..15199Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4624 15041..15199 +
1691481266.3729644-CDS-H-paniculata_contig4624:15040..151991691481266.3729644-CDS-H-paniculata_contig4624:15040..15199Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4624 15041..15199 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4624.11556.1prot_H-paniculata_contig4624.11556.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4624 15041..15199 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4624.11556.1

>prot_H-paniculata_contig4624.11556.1 ID=prot_H-paniculata_contig4624.11556.1|Name=mRNA_H-paniculata_contig4624.11556.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=53bp
MTEALLELLPDSPVYHVGMYRNPGSNIPVQYYNRLPKGHPSDVALVLDPV
IAS
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mRNA from alignment at H-paniculata_contig4624:15026..15199+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4624.11556.1 ID=mRNA_H-paniculata_contig4624.11556.1|Name=mRNA_H-paniculata_contig4624.11556.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=174bp|location=Sequence derived from alignment at H-paniculata_contig4624:15026..15199+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGGGTGGCTTGGGCATGACAGAGGCACTTCTCGAGCTGCTCCCAGATTC ACCGGTATACCACGTGGGCATGTATCGTAACCCTGGCAGCAATATCCCGG TACAGTACTACAACAGGCTACCGAAGGGGCACCCGTCAGATGTCGCCCTC GTGTTGGATCCCGTCATCGCCTCA
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Coding sequence (CDS) from alignment at H-paniculata_contig4624:15026..15199+

>mRNA_H-paniculata_contig4624.11556.1 ID=mRNA_H-paniculata_contig4624.11556.1|Name=mRNA_H-paniculata_contig4624.11556.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=318bp|location=Sequence derived from alignment at H-paniculata_contig4624:15026..15199+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACAGAGGCACTTCTCGAGCTGCTCCCAGATTCACCGGTATACCACGT
GGGCATGTATCGTAACCCTGGCAGCAATATCCCGGTACAGTACTACAACA
GGCTACCGAAGGGGCACCCGTCAGATGTCGCCCTCGTGTTGGATCCCGTC
ATCGCCTCAATGACAGAGGCACTTCTCGAGCTGCTCCCAGATTCACCGGT
ATACCACGTGGGCATGTATCGTAACCCTGGCAGCAATATCCCGGTACAGT
ACTACAACAGGCTACCGAAGGGGCACCCGTCAGATGTCGCCCTCGTGTTG
GATCCCGTCATCGCCTCA
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