mRNA_H-paniculata_contig46224.11550.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig46224.11550.1
Unique NamemRNA_H-paniculata_contig46224.11550.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig46224.11550.1 vs. uniprot
Match: A0A6H5KAG6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAG6_9PHAE)

HSP 1 Score: 229 bits (584), Expect = 4.870e-65
Identity = 103/162 (63.58%), Postives = 132/162 (81.48%), Query Frame = 1
Query:    1 VIGTRWVFKVKADGKFKARLVVQGWSQKHGIDCGSTFAPVCTLENQRLLLVLATAKGWTVYALDVQVTFLDGKLKESVFCKQAPSFKKTDSSTGQPYVMSSKRLIYGFRQSPNVWNHTIDNELRSMGFTPTISDPCVYSKGSNDTYIMPSLFIDDLLVTGST 486
            VIGTRWV++VK DG+FKAR+VVQGW+Q+HGIDC +TFAPVC + +QRLLL +A A+GW V A+DVQ  FL+GKL E V+  QAP F+K +SSTG+P V   K+ +YG RQSP+VWN TID +LR  GFTPT SDPCVY+KGS ++YIM +LF+DD+L+T +T
Sbjct:  690 VIGTRWVYRVKTDGRFKARVVVQGWAQQHGIDCFTTFAPVCKIGSQRLLLAIAAAQGWPVIAMDVQTAFLNGKLSEDVYTYQAPGFEKIESSTGKPLVWKLKKSLYGLRQSPSVWNLTIDKDLRGKGFTPTASDPCVYTKGSGNSYIMLTLFVDDILLTVAT 851          
BLAST of mRNA_H-paniculata_contig46224.11550.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE)

HSP 1 Score: 227 bits (578), Expect = 5.410e-64
Identity = 112/286 (39.16%), Postives = 170/286 (59.44%), Query Frame = 1
Query:    4 IGTRWVFKVKADGKFKARLVVQGWSQKHGIDCGSTFAPVCTLENQRLLLVLATAKGWTVYALDVQVTFLDGKLKESVFCKQAPSFKKTDSSTGQPYVMSSKRLIYGFRQSPNVWNHTIDNELRSMGFTPTISDPCVYSKGSNDTYIMPSLFIDDLLVTGSTDKLLMDVRNQL---FTITDLGEVSLILGIE---------VSQHKYALSILDRFNMSSANPTKTPGIKTDPNAAGNSGNLLDAAATKEYQTLVASFIFLTQCTRFDICFSVIQAARFMSAPTQRHL 825
            IG+RW++K+KA G  KARL+VQGW Q+HGIDCG T+APV    +Q +L+ +A  +G+ V  +DV   FL   ++E V+ +QA  ++ TD  TG P VM  K+ +YG +QSP  + +     ++ +GFT  +SDPCVY  G+  TY +  +++DD  + G T  ++ D++ QL   F +TD G   L+LG+E         VSQHKY ++ILD++ M    P  TPG   +      +   L     K YQ +V S +FLT  TR++I ++V+   R M+ PT +H+
Sbjct:  937 IGSRWLYKMKATGVMKARLIVQGWGQRHGIDCGGTYAPVSRFSSQLVLMAIAAERGYVVETMDVVTAFLQSNVEEEVYVRQAKGYEITDEVTGLPLVMKLKKSLYGLKQSPRNFGNAFAKGIKEIGFTALLSDPCVYVYGAGPTYAILCVYVDDCTLAGKTPSVVQDLKKQLSDKFKMTDGGPAELLLGMEISQSDGEIIVSQHKYVMNILDKYQMVDCKPAATPGSGPEIEQEPENAIYLSEEDKKLYQGIVGSLLFLTNTTRWEIGYAVMVLCRGMNKPTNQHM 1222          
BLAST of mRNA_H-paniculata_contig46224.11550.1 vs. uniprot
Match: A0A6H5JDU8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDU8_9PHAE)

HSP 1 Score: 205 bits (521), Expect = 1.030e-58
Identity = 108/289 (37.37%), Postives = 167/289 (57.79%), Query Frame = 1
Query:    1 VIGTRWVFKVKADGKFKARLVVQGWSQKHGIDCGSTFAPVCTLENQRLLLVLATAKGWTVYALDVQVTFLDGKLKESVFCKQAPSFKKTDSSTGQPYVMSSKRLIYGFRQSPNVWNHTIDNELRSMGFTPTISDPCVYSKGSNDTYIMPSLFIDDLLVTGSTDKLLMDVRNQL---FTITDLGEVSLILGIEV-----------SQHKYALSILDRFNMSSANPTKTPGIKTDPNAAGNSGNLLDAAATKEYQTLVASFIFLTQCTRFDICFSVIQAARFMSAPTQRHL 825
            ++GT++VFK K DG+FKA LVV G  Q+ G D GS++APVC + + R+   +     W +Y LDV V FL+      V+ + AP     +S+TG+P V   +R +YG  QSP +WN T++  L+  G+  T  DPCVY   S +  ++ ++++DD+L+TG  D+ L+D + +L   F +TD+GEV  ILGI+V           SQ  Y  ++L+RF M  ANP  T G   + +       +L     K YQ++  S ++L QCTRFD+ ++ +Q ++  S P Q +L
Sbjct:  125 ILGTKFVFKKKLDGRFKAHLVVGGHRQEPGQDYGSSYAPVCRIGSIRMTCTIGCHNNWPIYQLDVVVAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLNESLKVFGWKRTQYDPCVYMYTSGNIIVILTVYVDDILITGG-DQQLVDQKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEYYVNTLLERFGMQEANPVSTLGYGAEISTNQPQDQILGPTDKKIYQSMTRSILYLAQCTRFDLSYAALQLSKACSNPAQVNL 412          
BLAST of mRNA_H-paniculata_contig46224.11550.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE)

HSP 1 Score: 209 bits (531), Expect = 2.420e-58
Identity = 111/288 (38.54%), Postives = 165/288 (57.29%), Query Frame = 1
Query:    4 IGTRWVFKVKADGKFKARLVVQGWSQKHGIDCGSTFAPVCTLENQRLLLVLATAKGWTVYALDVQVTFLDGKLKESVFCKQAPSFKKTDSSTGQPYVMSSKRLIYGFRQSPNVWNHTIDNELRSMGFTPTISDPCVYSKGSNDTYIMPSLFIDDLLVTGSTDKLLMDVRNQL---FTITDLGEVSLILGIEV-----------SQHKYALSILDRFNMSSANPTKTPGIKTDPNAAGNSGNLLDAAATKEYQTLVASFIFLTQCTRFDICFSVIQAARFMSAPTQRHL 825
            I ++WVFK KA G FK RLV QGW+Q  G+DCG+T+APVC  ++ R+L  +A      +  +DV   FL   + E+VF +Q P F+  D   G   VM  ++ +YG  QSP+ W HTID  L  +GF P  SD CVY    +D  +  +L++DDLL+ G+  + +  ++ +L   F +TD+GEV L+LG+E+           SQ  Y+ SIL+RF MS   PT TPG  ++ +       LL    T+ YQ +V   I++ Q  R+DI ++  Q  R M+ P++ H+
Sbjct:  506 IKSKWVFKRKAGGSFKGRLVAQGWNQVPGLDCGNTYAPVCRFQSIRMLACIAVQFNLELDQMDVSTAFLYADILENVFVEQPPGFEVKDKDGGD-LVMQLQKSLYGLAQSPSNWFHTIDPFLVEIGFVPLKSDTCVYLYDHDDVQVYLTLYVDDLLLAGNNSRAISMIKKKLTQRFKMTDMGEVKLVLGMEIKRDRNQGTLTISQEAYSKSILERFGMSECKPTSTPGYGSELSNKQPEDTLLSEEETRRYQGIVGCLIYIAQVLRYDIMYATGQLTRPMAKPSKIHM 792          
BLAST of mRNA_H-paniculata_contig46224.11550.1 vs. uniprot
Match: A0A6H5KE92_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE92_9PHAE)

HSP 1 Score: 208 bits (529), Expect = 5.180e-58
Identity = 107/286 (37.41%), Postives = 163/286 (56.99%), Query Frame = 1
Query:    1 VIGTRWVFKVKADGKFKARLVVQGWSQKHGIDCGSTFAPVCTLENQRLLLVLATAKGWTVYALDVQVTFLDGKLKESVFCKQAPSFKKTDSSTGQPYVMSSKRLIYGFRQSPNVWNHTIDNELRSMGFTPTISDPCVYSKGSNDTYIMPSLFIDDLLVTGSTDKLLMDVRNQL---FTITDLGEVSLILGIEV-----------SQHKYALSILDRFNMSSANPTKTPGIKTDPNAAGNSGNLLDAAATKEYQTLVASFIFLTQCTRFDICFSVIQAARFMSAPTQ 816
            ++GT++VFK K DG+FKARLVV G  Q+ G D G ++APVC + + R+   +     W +Y LDV   FL+      V+ + AP     +S+TG+P V   +R +YG  QSP +WN T+D  L   G+  T SDPCVY   S +  ++ ++++DD+L+TG   +L+   + +L   F +TD+GEV  ILGI+V           SQ  Y  ++L+RF M  ANP  TPG   + +       +L     K YQ++  S ++L QCTRFD+ ++ +Q ++  S P Q
Sbjct:  388 ILGTKFVFKKKLDGRFKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQ 673          
BLAST of mRNA_H-paniculata_contig46224.11550.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 209 bits (531), Expect = 1.200e-57
Identity = 113/288 (39.24%), Postives = 165/288 (57.29%), Query Frame = 1
Query:    4 IGTRWVFKVKADGKFKARLVVQGWSQKHGIDCGSTFAPVCTLENQRLLLVLATAKGWTVYALDVQVTFLDGKLKESVFCKQAPSFKKTDSSTGQPYVMSSKRLIYGFRQSPNVWNHTIDNELRSMGFTPTISDPCVYSKGSNDTYIMPSLFIDDLLVTGSTDKLLMDVRNQL---FTITDLGEVSLILGIEV-----------SQHKYALSILDRFNMSSANPTKTPGIKTDPNAAGNSGNLLDAAATKEYQTLVASFIFLTQCTRFDICFSVIQAARFMSAPTQRHL 825
            I ++WVFK KADG FK R+V QGW+Q  G+DCGST+APVC +++ R++  +          +DV   FL   ++E VF +Q P F+  D   G   VM   + +YG  QSP  W +TID  L  +GF    SDPCVY    N   I  +L++DDLL+ G+    +  V+ +L   F +TDLGE SL+LG+E+           SQ  Y  SIL+RF +S + PT TPG  ++ +       LLD   T++YQ +V S +++ Q  R+DI ++  Q AR M+ P++ H+
Sbjct: 1198 IKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDKDGGD-MVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGISGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHM 1484          
BLAST of mRNA_H-paniculata_contig46224.11550.1 vs. uniprot
Match: A0A6H5KQD0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQD0_9PHAE)

HSP 1 Score: 200 bits (508), Expect = 2.540e-57
Identity = 105/286 (36.71%), Postives = 161/286 (56.29%), Query Frame = 1
Query:    1 VIGTRWVFKVKADGKFKARLVVQGWSQKHGIDCGSTFAPVCTLENQRLLLVLATAKGWTVYALDVQVTFLDGKLKESVFCKQAPSFKKTDSSTGQPYVMSSKRLIYGFRQSPNVWNHTIDNELRSMGFTPTISDPCVYSKGSNDTYIMPSLFIDDLLVTGSTDKLLMDVRNQL---FTITDLGEVSLILGIEV-----------SQHKYALSILDRFNMSSANPTKTPGIKTDPNAAGNSGNLLDAAATKEYQTLVASFIFLTQCTRFDICFSVIQAARFMSAPTQ 816
            ++GT++VFK K DG+FKARLVV G  Q+ G D G ++APVC + + R+   +     W +Y LDV   FL+      V+ + AP     +S+TG+P V   +R +YG  QSP +WN T+D  L   G+  T SDPCVY   S +  ++ ++++DD+L+TG   +L+   + +L   F +TD+GEV  ILGI+V           SQ  Y  + L+RF M  ANP  T G   + +       +L     K YQ++  S ++L QCT+FD+ ++ +Q ++  S P Q
Sbjct:   24 ILGTKFVFKKKLDGRFKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRYVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTRLERFGMQEANPVSTLGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTQFDLSYAALQLSKACSNPAQ 309          
BLAST of mRNA_H-paniculata_contig46224.11550.1 vs. uniprot
Match: A0A6H5K9R3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9R3_9PHAE)

HSP 1 Score: 206 bits (524), Expect = 2.650e-57
Identity = 116/288 (40.28%), Postives = 164/288 (56.94%), Query Frame = 1
Query:    1 VIGTRWVFKVKADGKFKARLVVQGWSQKHGIDCGSTFAPVCTLENQRLLLVLATAKGWTVYALDVQVTFLDGKLKESVFCKQAPSFKKTDSSTGQPYVMSSKRLIYGFRQSPNVWNHTIDNELRSMGFTPTISDPCVYSKGSNDTYIMPSLFIDDLLVTGSTDKLLMDVRNQL---FTITDLGEVSLILGIEV-----------SQHKYALSILDRFNMSSANPTKTPGIKTDPNAAGNSGNLLDAAATKEYQTLVASFIFLTQCTRFDICFSVIQAARFMSAPTQRH 822
            V+GTR+VFK KAD +FK RLVVQG  Q+ GID G  +A VC + + R+   +A  +GW V+ +DV V FL   + + V+ K AP     D +TG   V   +R +YG  QSP +W  TID  L  +GF PT SDPCVY  GS DT ++ +L+++D+L++G    L+ D++ +L   F ITD+GEV LILG++V           SQ  Y  SIL+   M + NP               +  LL AA +K YQ++  S ++L QC R+D  ++V Q  R  S P + H
Sbjct:  426 VLGTRFVFKQKADERFKVRLVVQGHVQESGIDDGRRYARVCRIGSVRIFFAIACERGWPVWQMDVAVAFLQPTIDKDVWVKPAPGQDAKDPATGGIMVYKLERSLYGLAQSPVLWYDTIDEVLVVIGFRPTQSDPCVYIHGSGDTLVILTLYVNDILISGKDPDLVADLKKELQDRFEITDIGEVRLILGMKVTRSYENGTLVVSQKGYVKSILESLGMENCNPP--------------ADELLGAAESKLYQSITGSLLYLAQCKRYDQSYAVNQLTRACSKPARAH 699          
BLAST of mRNA_H-paniculata_contig46224.11550.1 vs. uniprot
Match: A0A6H5KG29_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG29_9PHAE)

HSP 1 Score: 193 bits (490), Expect = 2.180e-56
Identity = 105/296 (35.47%), Postives = 161/296 (54.39%), Query Frame = 1
Query:    1 VIGTRWVFKVKADGKFKARLVVQGWSQKHGIDCGSTFAPVCTLENQRLLLVLATAKGWTVYALDVQVTFLDGKLKESVFCKQAPS----------FKKTDSSTGQPYVMSSKRLIYGFRQSPNVWNHTIDNELRSMGFTPTISDPCVYSKGSNDTYIMPSLFIDDLLVTGSTDKLLMDVRNQL---FTITDLGEVSLILGIEV-----------SQHKYALSILDRFNMSSANPTKTPGIKTDPNAAGNSGNLLDAAATKEYQTLVASFIFLTQCTRFDICFSVIQAARFMSAPTQ 816
            ++GT++VFK K +G+FKARLVV G  Q+ G D G ++APVC + + R+         W +Y LDV   FL+      V+ + AP               +S+TG+P V   +R +YG  QSP + N T+D  L   G+  T SDPCVY   S +  ++ ++++DD+L+TG   +L+   + +L   F +TD+GEV  ILGI+V           SQ  Y  ++L+RF M  ANP  TPG   + +       +L     K YQ++  S ++L QCTRFD+ ++ +Q ++  S P Q
Sbjct:   24 ILGTKFVFKKKLEGRFKARLVVGGHRQEPGQDYGHSYAPVCRIGSIRMTCATGCHNNWPIYQLDVVGAFLNALCDRDVYVRPAPGTXXXXXXXXXXSAKNSATGEPMVYKLERSLYGLSQSPALLNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDNKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQ 319          
BLAST of mRNA_H-paniculata_contig46224.11550.1 vs. uniprot
Match: A0A6H5KWT4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWT4_9PHAE)

HSP 1 Score: 198 bits (503), Expect = 6.920e-56
Identity = 106/277 (38.27%), Postives = 158/277 (57.04%), Query Frame = 1
Query:    4 IGTRWVFKVKADGKFKARLVVQGWSQKHGIDCGSTFAPVCTLENQRLLLVLATAKGWTVYALDVQVTFLDGKLKESVFCKQAPSFKKTDSSTGQPYVMSSKRLIYGFRQSPNVWNHTIDNELRSMGFTPTISDPCVYSKGSNDTYIMPSLFIDDLLVTGSTDKLLMDVRNQL---FTITDLGEVSLILGIEVSQHKYALSILDRFNMSSANPTKTPGIKTDPNAAGNSGNLLDAAATKEYQTLVASFIFLTQCTRFDICFSVIQAARFMSAPTQRHL 825
            I ++WVFK KADG FK RLVVQGW+Q  G+D GSTFAPVC L++ R+L   A      +  +DV   FL   + E+VF +Q P F+  +   G   VM  ++ +YG  QSP+ W HTID  L  +GF P  SD C+Y    +D  +  +L++DDLL+ G     +  ++ +L   F +TD+G V L+LG+E+ + +      +RF MS   PT TPG  ++ +       LL    T  YQ +V   +++ Q  R+DI ++  Q AR M+ P++ H+
Sbjct:   97 IKSKWVFKRKADGSFKGRLVVQGWNQVPGLDYGSTFAPVCRLQSIRMLACTAVQFNLELDQMDVSTAFLYADILENVFVEQPPGFEVKNKDGGD-LVMQLQKSLYGLAQSPSNWFHTIDPLLVEIGFVPLKSDTCIYLYDHDDVQVYLTLYVDDLLLAGDNSNAISTIKKKLKQRFNMTDMGGVKLVLGMEIKRDRNQ----ERFGMSECKPTSTPGYGSELSKKQPEDTLLGEEETGRYQDIVGCLMYIAQVLRYDIMYATGQLARPMAKPSKIHM 368          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig46224.11550.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KAG6_9PHAE4.870e-6563.58Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KY84_9PHAE5.410e-6439.16Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JDU8_9PHAE1.030e-5837.37Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KL37_9PHAE2.420e-5838.54Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KE92_9PHAE5.180e-5837.41Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KJH6_9PHAE1.200e-5739.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQD0_9PHAE2.540e-5736.71Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K9R3_9PHAE2.650e-5740.28Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KG29_9PHAE2.180e-5635.47Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KWT4_9PHAE6.920e-5638.27Reverse transcriptase Ty1/copia-type domain-contai... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig46224contigH-paniculata_contig46224:47..1157 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score182.2
Seed ortholog evalue3.3e-43
Seed eggNOG ortholog981085.XP_010091283.1
KEGG koko:K05665,ko:K05666,ko:K05670
KEGG TC3.A.1.208,3.A.1.208.2,3.A.1.208.8
KEGG Pathwayko01523,ko01524,ko02010,ko04071,ko04976,ko04977,ko05206,map01523,map01524,map02010,map04071,map04976,map04977,map05206
Hectar predicted targeting categoryother localisation
GOsGO:0000325,GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005911,GO:0006810,GO:0008150,GO:0009506,GO:0009605,GO:0009607,GO:0009624,GO:0015399,GO:0015405,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022804,GO:0022857,GO:0030054,GO:0031090,GO:0042623,GO:0042626,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043492,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0051179,GO:0051234,GO:0051704,GO:0051707,GO:0055044,GO:0055085,GO:0098588,GO:0098805
EggNOG free text desc.ABC transporter C family member
EggNOG OGs37PYD@33090,3G8VE@35493,4JDGI@91835,COG1132@1,COG2801@1,KOG0017@2759,KOG0054@2759
COG Functional cat.Q
Best tax levelfabids
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Exons3
Model size831
Cds size831
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig46224.11550.1prot_H-paniculata_contig46224.11550.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig46224 47..1157 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930381.4647899-CDS-H-paniculata_contig46224:46..5651622930381.4647899-CDS-H-paniculata_contig46224:46..565Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46224 47..565 +
1691481266.1115632-CDS-H-paniculata_contig46224:46..5651691481266.1115632-CDS-H-paniculata_contig46224:46..565Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46224 47..565 +
1622930381.497704-CDS-H-paniculata_contig46224:812..8601622930381.497704-CDS-H-paniculata_contig46224:812..860Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46224 813..860 +
1691481266.1329684-CDS-H-paniculata_contig46224:812..8601691481266.1329684-CDS-H-paniculata_contig46224:812..860Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46224 813..860 +
1622930381.5114505-CDS-H-paniculata_contig46224:893..11571622930381.5114505-CDS-H-paniculata_contig46224:893..1157Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46224 894..1157 +
1691481266.1510696-CDS-H-paniculata_contig46224:893..11571691481266.1510696-CDS-H-paniculata_contig46224:893..1157Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46224 894..1157 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig46224.11550.1

>prot_H-paniculata_contig46224.11550.1 ID=prot_H-paniculata_contig46224.11550.1|Name=mRNA_H-paniculata_contig46224.11550.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=277bp
VIGTRWVFKVKADGKFKARLVVQGWSQKHGIDCGSTFAPVCTLENQRLLL
VLATAKGWTVYALDVQVTFLDGKLKESVFCKQAPSFKKTDSSTGQPYVMS
SKRLIYGFRQSPNVWNHTIDNELRSMGFTPTISDPCVYSKGSNDTYIMPS
LFIDDLLVTGSTDKLLMDVRNQLFTITDLGEVSLILGIEVSQHKYALSIL
DRFNMSSANPTKTPGIKTDPNAAGNSGNLLDAAATKEYQTLVASFIFLTQ
CTRFDICFSVIQAARFMSAPTQRHLC*
back to top

mRNA from alignment at H-paniculata_contig46224:47..1157+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig46224.11550.1 ID=mRNA_H-paniculata_contig46224.11550.1|Name=mRNA_H-paniculata_contig46224.11550.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1111bp|location=Sequence derived from alignment at H-paniculata_contig46224:47..1157+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCATCGGCACGCGCTGGGTGTTTAAAGTGAAAGCAGACGGAAAATTCAA GGCCCGACTCGTGGTACAAGGCTGGTCGCAAAAACACGGAATAGACTGTG GGAGCACTTTTGCACCAGTATGCACACTGGAGAACCAGAGACTGCTGCTC GTGCTTGCAACAGCAAAGGGTTGGACAGTCTACGCACTGGATGTTCAAGT TACGTTTCTAGACGGCAAACTGAAGGAAAGCGTCTTCTGTAAACAAGCAC CTAGCTTCAAGAAGACGGACTCCTCTACAGGACAACCCTACGTGATGAGT TCAAAGAGGTTGATATATGGGTTCCGCCAAAGCCCAAATGTTTGGAACCA TACTATTGACAACGAGCTGAGGAGCATGGGCTTTACACCGACCATCTCGG ATCCTTGTGTGTACAGTAAAGGAAGCAACGACACCTACATTATGCCCAGC CTTTTCATCGACGACCTCCTAGTTACAGGATCAACAGATAAACTACTAAT GGATGTTCGCAACCAACTTGTTGGGTATGATCGATAAAGCGACGGTTACG TGACTATTCGGTTACATGGAGTTTATATATGGTCGGCATGTTTTATTGAA CTGGATCTACAAAGAGTCAGGACGGTGTGCATATGTTCCACCGTCCTTTA ATCACTGCGCTCTTCTACCCTTTCCTCTCCTATTTACATCTCCACCTCCC CACCCCGGAATGGTTGTGCCTCACGCCTAGAAATAAAGACACAAACGCCC TTAAGCATATGACAAGTTCACCATCACGGACCTTGGAGAGGTATCGCTTA TTCTTGGCATAGAGGTACTGCGCAACAAACAAACTGGCACCCTTTAGGTA TCACAGCACAAGTACGCACTGTCCATTTTGGACAGGTTCAACATGTCATC GGCAAATCCTACCAAAACGCCAGGTATTAAAACGGACCCAAACGCTGCTG GTAATAGTGGCAACCTGCTGGATGCAGCAGCTACGAAGGAGTATCAAACC TTGGTAGCGAGCTTCATCTTCCTGACTCAGTGTACGAGATTCGACATCTG TTTCAGCGTCATCCAAGCAGCACGGTTCATGAGTGCACCAACACAACGGC ACTTGTGTTGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig46224:47..1157+

>mRNA_H-paniculata_contig46224.11550.1 ID=mRNA_H-paniculata_contig46224.11550.1|Name=mRNA_H-paniculata_contig46224.11550.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1662bp|location=Sequence derived from alignment at H-paniculata_contig46224:47..1157+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCATCGGCACGCGCTGGGTGTTTAAAGTGAAAGCAGACGGAAAATTCAA
GGCCCGACTCGTGGTACAAGGCTGGTCGCAAAAACACGGAATAGACTGTG
GGAGCACTTTTGCACCAGTATGCACACTGGAGAACCAGAGACTGCTGCTC
GTGCTTGCAACAGCAAAGGGTTGGACAGTCTACGCACTGGATGTTCAAGT
TACGTTTCTAGACGGCAAACTGAAGGAAAGCGTCTTCTGTAAACAAGCAC
CTAGCTTCAAGAAGACGGACTCCTCTACAGGACAACCCTACGTGATGAGT
TCAAAGAGGTTGATATATGGGTTCCGCCAAAGCCCAAATGTTTGGAACCA
TACTATTGACAACGAGCTGAGGAGCATGGGCTTTACACCGACCATCTCGG
ATCCTTGTGTGTACAGTAAAGGAAGCAACGACACCTACATTATGCCCAGC
CTTTTCATCGACGACCTCCTAGTTACAGGATCAACAGATAAACTACTAAT
GGATGTTCGCAACCAACTTGTCATCGGCACGCGCTGGGTGTTTAAAGTGA
AAGCAGACGGAAAATTCAAGGCCCGACTCGTGGTACAAGGCTGGTCGCAA
AAACACGGAATAGACTGTGGGAGCACTTTTGCACCAGTATGCACACTGGA
GAACCAGAGACTGCTGCTCGTGCTTGCAACAGCAAAGGGTTGGACAGTCT
ACGCACTGGATGTTCAAGTTACGTTTCTAGACGGCAAACTGAAGGAAAGC
GTCTTCTGTAAACAAGCACCTAGCTTCAAGAAGACGGACTCCTCTACAGG
ACAACCCTACGTGATGAGTTCAAAGAGGTTGATATATGGGTTCCGCCAAA
GCCCAAATGTTTGGAACCATACTATTGACAACGAGCTGAGGAGCATGGGC
TTTACACCGACCATCTCGGATCCTTGTGTGTACAGTAAAGGAAGCAACGA
CACCTACATTATGCCCAGCCTTTTCATCGACGACCTCCTAGTTACAGGAT
CAACAGATAAACTACTAATGGATGTTCGCAACCAACTTTTCACCATCACG
GACCTTGGAGAGGTATCGCTTATTCTTGGCATAGAGTTCACCATCACGGA
CCTTGGAGAGGTATCGCTTATTCTTGGCATAGAGGTATCACAGCACAAGT
ACGCACTGTCCATTTTGGACAGGTTCAACATGTCATCGGCAAATCCTACC
AAAACGCCAGGTATTAAAACGGACCCAAACGCTGCTGGTAATAGTGGCAA
CCTGCTGGATGCAGCAGCTACGAAGGAGTATCAAACCTTGGTAGCGAGCT
TCATCTTCCTGACTCAGTGTACGAGATTCGACATCTGTTTCAGCGTCATC
CAAGCAGCACGGTTCATGAGTGCACCAACACAACGGCACTTGTGTTGAGT
ATCACAGCACAAGTACGCACTGTCCATTTTGGACAGGTTCAACATGTCAT
CGGCAAATCCTACCAAAACGCCAGGTATTAAAACGGACCCAAACGCTGCT
GGTAATAGTGGCAACCTGCTGGATGCAGCAGCTACGAAGGAGTATCAAAC
CTTGGTAGCGAGCTTCATCTTCCTGACTCAGTGTACGAGATTCGACATCT
GTTTCAGCGTCATCCAAGCAGCACGGTTCATGAGTGCACCAACACAACGG
CACTTGTGTTGA
back to top