mRNA_H-paniculata_contig46224.11550.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig46224.11550.1 vs. uniprot
Match: A0A6H5KAG6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAG6_9PHAE) HSP 1 Score: 229 bits (584), Expect = 4.870e-65 Identity = 103/162 (63.58%), Postives = 132/162 (81.48%), Query Frame = 1
Query: 1 VIGTRWVFKVKADGKFKARLVVQGWSQKHGIDCGSTFAPVCTLENQRLLLVLATAKGWTVYALDVQVTFLDGKLKESVFCKQAPSFKKTDSSTGQPYVMSSKRLIYGFRQSPNVWNHTIDNELRSMGFTPTISDPCVYSKGSNDTYIMPSLFIDDLLVTGST 486
VIGTRWV++VK DG+FKAR+VVQGW+Q+HGIDC +TFAPVC + +QRLLL +A A+GW V A+DVQ FL+GKL E V+ QAP F+K +SSTG+P V K+ +YG RQSP+VWN TID +LR GFTPT SDPCVY+KGS ++YIM +LF+DD+L+T +T
Sbjct: 690 VIGTRWVYRVKTDGRFKARVVVQGWAQQHGIDCFTTFAPVCKIGSQRLLLAIAAAQGWPVIAMDVQTAFLNGKLSEDVYTYQAPGFEKIESSTGKPLVWKLKKSLYGLRQSPSVWNLTIDKDLRGKGFTPTASDPCVYTKGSGNSYIMLTLFVDDILLTVAT 851
BLAST of mRNA_H-paniculata_contig46224.11550.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE) HSP 1 Score: 227 bits (578), Expect = 5.410e-64 Identity = 112/286 (39.16%), Postives = 170/286 (59.44%), Query Frame = 1
Query: 4 IGTRWVFKVKADGKFKARLVVQGWSQKHGIDCGSTFAPVCTLENQRLLLVLATAKGWTVYALDVQVTFLDGKLKESVFCKQAPSFKKTDSSTGQPYVMSSKRLIYGFRQSPNVWNHTIDNELRSMGFTPTISDPCVYSKGSNDTYIMPSLFIDDLLVTGSTDKLLMDVRNQL---FTITDLGEVSLILGIE---------VSQHKYALSILDRFNMSSANPTKTPGIKTDPNAAGNSGNLLDAAATKEYQTLVASFIFLTQCTRFDICFSVIQAARFMSAPTQRHL 825
IG+RW++K+KA G KARL+VQGW Q+HGIDCG T+APV +Q +L+ +A +G+ V +DV FL ++E V+ +QA ++ TD TG P VM K+ +YG +QSP + + ++ +GFT +SDPCVY G+ TY + +++DD + G T ++ D++ QL F +TD G L+LG+E VSQHKY ++ILD++ M P TPG + + L K YQ +V S +FLT TR++I ++V+ R M+ PT +H+
Sbjct: 937 IGSRWLYKMKATGVMKARLIVQGWGQRHGIDCGGTYAPVSRFSSQLVLMAIAAERGYVVETMDVVTAFLQSNVEEEVYVRQAKGYEITDEVTGLPLVMKLKKSLYGLKQSPRNFGNAFAKGIKEIGFTALLSDPCVYVYGAGPTYAILCVYVDDCTLAGKTPSVVQDLKKQLSDKFKMTDGGPAELLLGMEISQSDGEIIVSQHKYVMNILDKYQMVDCKPAATPGSGPEIEQEPENAIYLSEEDKKLYQGIVGSLLFLTNTTRWEIGYAVMVLCRGMNKPTNQHM 1222
BLAST of mRNA_H-paniculata_contig46224.11550.1 vs. uniprot
Match: A0A6H5JDU8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDU8_9PHAE) HSP 1 Score: 205 bits (521), Expect = 1.030e-58 Identity = 108/289 (37.37%), Postives = 167/289 (57.79%), Query Frame = 1
Query: 1 VIGTRWVFKVKADGKFKARLVVQGWSQKHGIDCGSTFAPVCTLENQRLLLVLATAKGWTVYALDVQVTFLDGKLKESVFCKQAPSFKKTDSSTGQPYVMSSKRLIYGFRQSPNVWNHTIDNELRSMGFTPTISDPCVYSKGSNDTYIMPSLFIDDLLVTGSTDKLLMDVRNQL---FTITDLGEVSLILGIEV-----------SQHKYALSILDRFNMSSANPTKTPGIKTDPNAAGNSGNLLDAAATKEYQTLVASFIFLTQCTRFDICFSVIQAARFMSAPTQRHL 825
++GT++VFK K DG+FKA LVV G Q+ G D GS++APVC + + R+ + W +Y LDV V FL+ V+ + AP +S+TG+P V +R +YG QSP +WN T++ L+ G+ T DPCVY S + ++ ++++DD+L+TG D+ L+D + +L F +TD+GEV ILGI+V SQ Y ++L+RF M ANP T G + + +L K YQ++ S ++L QCTRFD+ ++ +Q ++ S P Q +L
Sbjct: 125 ILGTKFVFKKKLDGRFKAHLVVGGHRQEPGQDYGSSYAPVCRIGSIRMTCTIGCHNNWPIYQLDVVVAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLNESLKVFGWKRTQYDPCVYMYTSGNIIVILTVYVDDILITGG-DQQLVDQKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEYYVNTLLERFGMQEANPVSTLGYGAEISTNQPQDQILGPTDKKIYQSMTRSILYLAQCTRFDLSYAALQLSKACSNPAQVNL 412
BLAST of mRNA_H-paniculata_contig46224.11550.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE) HSP 1 Score: 209 bits (531), Expect = 2.420e-58 Identity = 111/288 (38.54%), Postives = 165/288 (57.29%), Query Frame = 1
Query: 4 IGTRWVFKVKADGKFKARLVVQGWSQKHGIDCGSTFAPVCTLENQRLLLVLATAKGWTVYALDVQVTFLDGKLKESVFCKQAPSFKKTDSSTGQPYVMSSKRLIYGFRQSPNVWNHTIDNELRSMGFTPTISDPCVYSKGSNDTYIMPSLFIDDLLVTGSTDKLLMDVRNQL---FTITDLGEVSLILGIEV-----------SQHKYALSILDRFNMSSANPTKTPGIKTDPNAAGNSGNLLDAAATKEYQTLVASFIFLTQCTRFDICFSVIQAARFMSAPTQRHL 825
I ++WVFK KA G FK RLV QGW+Q G+DCG+T+APVC ++ R+L +A + +DV FL + E+VF +Q P F+ D G VM ++ +YG QSP+ W HTID L +GF P SD CVY +D + +L++DDLL+ G+ + + ++ +L F +TD+GEV L+LG+E+ SQ Y+ SIL+RF MS PT TPG ++ + LL T+ YQ +V I++ Q R+DI ++ Q R M+ P++ H+
Sbjct: 506 IKSKWVFKRKAGGSFKGRLVAQGWNQVPGLDCGNTYAPVCRFQSIRMLACIAVQFNLELDQMDVSTAFLYADILENVFVEQPPGFEVKDKDGGD-LVMQLQKSLYGLAQSPSNWFHTIDPFLVEIGFVPLKSDTCVYLYDHDDVQVYLTLYVDDLLLAGNNSRAISMIKKKLTQRFKMTDMGEVKLVLGMEIKRDRNQGTLTISQEAYSKSILERFGMSECKPTSTPGYGSELSNKQPEDTLLSEEETRRYQGIVGCLIYIAQVLRYDIMYATGQLTRPMAKPSKIHM 792
BLAST of mRNA_H-paniculata_contig46224.11550.1 vs. uniprot
Match: A0A6H5KE92_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE92_9PHAE) HSP 1 Score: 208 bits (529), Expect = 5.180e-58 Identity = 107/286 (37.41%), Postives = 163/286 (56.99%), Query Frame = 1
Query: 1 VIGTRWVFKVKADGKFKARLVVQGWSQKHGIDCGSTFAPVCTLENQRLLLVLATAKGWTVYALDVQVTFLDGKLKESVFCKQAPSFKKTDSSTGQPYVMSSKRLIYGFRQSPNVWNHTIDNELRSMGFTPTISDPCVYSKGSNDTYIMPSLFIDDLLVTGSTDKLLMDVRNQL---FTITDLGEVSLILGIEV-----------SQHKYALSILDRFNMSSANPTKTPGIKTDPNAAGNSGNLLDAAATKEYQTLVASFIFLTQCTRFDICFSVIQAARFMSAPTQ 816
++GT++VFK K DG+FKARLVV G Q+ G D G ++APVC + + R+ + W +Y LDV FL+ V+ + AP +S+TG+P V +R +YG QSP +WN T+D L G+ T SDPCVY S + ++ ++++DD+L+TG +L+ + +L F +TD+GEV ILGI+V SQ Y ++L+RF M ANP TPG + + +L K YQ++ S ++L QCTRFD+ ++ +Q ++ S P Q
Sbjct: 388 ILGTKFVFKKKLDGRFKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQ 673
BLAST of mRNA_H-paniculata_contig46224.11550.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE) HSP 1 Score: 209 bits (531), Expect = 1.200e-57 Identity = 113/288 (39.24%), Postives = 165/288 (57.29%), Query Frame = 1
Query: 4 IGTRWVFKVKADGKFKARLVVQGWSQKHGIDCGSTFAPVCTLENQRLLLVLATAKGWTVYALDVQVTFLDGKLKESVFCKQAPSFKKTDSSTGQPYVMSSKRLIYGFRQSPNVWNHTIDNELRSMGFTPTISDPCVYSKGSNDTYIMPSLFIDDLLVTGSTDKLLMDVRNQL---FTITDLGEVSLILGIEV-----------SQHKYALSILDRFNMSSANPTKTPGIKTDPNAAGNSGNLLDAAATKEYQTLVASFIFLTQCTRFDICFSVIQAARFMSAPTQRHL 825
I ++WVFK KADG FK R+V QGW+Q G+DCGST+APVC +++ R++ + +DV FL ++E VF +Q P F+ D G VM + +YG QSP W +TID L +GF SDPCVY N I +L++DDLL+ G+ + V+ +L F +TDLGE SL+LG+E+ SQ Y SIL+RF +S + PT TPG ++ + LLD T++YQ +V S +++ Q R+DI ++ Q AR M+ P++ H+
Sbjct: 1198 IKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDKDGGD-MVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGISGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHM 1484
BLAST of mRNA_H-paniculata_contig46224.11550.1 vs. uniprot
Match: A0A6H5KQD0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQD0_9PHAE) HSP 1 Score: 200 bits (508), Expect = 2.540e-57 Identity = 105/286 (36.71%), Postives = 161/286 (56.29%), Query Frame = 1
Query: 1 VIGTRWVFKVKADGKFKARLVVQGWSQKHGIDCGSTFAPVCTLENQRLLLVLATAKGWTVYALDVQVTFLDGKLKESVFCKQAPSFKKTDSSTGQPYVMSSKRLIYGFRQSPNVWNHTIDNELRSMGFTPTISDPCVYSKGSNDTYIMPSLFIDDLLVTGSTDKLLMDVRNQL---FTITDLGEVSLILGIEV-----------SQHKYALSILDRFNMSSANPTKTPGIKTDPNAAGNSGNLLDAAATKEYQTLVASFIFLTQCTRFDICFSVIQAARFMSAPTQ 816
++GT++VFK K DG+FKARLVV G Q+ G D G ++APVC + + R+ + W +Y LDV FL+ V+ + AP +S+TG+P V +R +YG QSP +WN T+D L G+ T SDPCVY S + ++ ++++DD+L+TG +L+ + +L F +TD+GEV ILGI+V SQ Y + L+RF M ANP T G + + +L K YQ++ S ++L QCT+FD+ ++ +Q ++ S P Q
Sbjct: 24 ILGTKFVFKKKLDGRFKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRYVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTRLERFGMQEANPVSTLGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTQFDLSYAALQLSKACSNPAQ 309
BLAST of mRNA_H-paniculata_contig46224.11550.1 vs. uniprot
Match: A0A6H5K9R3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9R3_9PHAE) HSP 1 Score: 206 bits (524), Expect = 2.650e-57 Identity = 116/288 (40.28%), Postives = 164/288 (56.94%), Query Frame = 1
Query: 1 VIGTRWVFKVKADGKFKARLVVQGWSQKHGIDCGSTFAPVCTLENQRLLLVLATAKGWTVYALDVQVTFLDGKLKESVFCKQAPSFKKTDSSTGQPYVMSSKRLIYGFRQSPNVWNHTIDNELRSMGFTPTISDPCVYSKGSNDTYIMPSLFIDDLLVTGSTDKLLMDVRNQL---FTITDLGEVSLILGIEV-----------SQHKYALSILDRFNMSSANPTKTPGIKTDPNAAGNSGNLLDAAATKEYQTLVASFIFLTQCTRFDICFSVIQAARFMSAPTQRH 822
V+GTR+VFK KAD +FK RLVVQG Q+ GID G +A VC + + R+ +A +GW V+ +DV V FL + + V+ K AP D +TG V +R +YG QSP +W TID L +GF PT SDPCVY GS DT ++ +L+++D+L++G L+ D++ +L F ITD+GEV LILG++V SQ Y SIL+ M + NP + LL AA +K YQ++ S ++L QC R+D ++V Q R S P + H
Sbjct: 426 VLGTRFVFKQKADERFKVRLVVQGHVQESGIDDGRRYARVCRIGSVRIFFAIACERGWPVWQMDVAVAFLQPTIDKDVWVKPAPGQDAKDPATGGIMVYKLERSLYGLAQSPVLWYDTIDEVLVVIGFRPTQSDPCVYIHGSGDTLVILTLYVNDILISGKDPDLVADLKKELQDRFEITDIGEVRLILGMKVTRSYENGTLVVSQKGYVKSILESLGMENCNPP--------------ADELLGAAESKLYQSITGSLLYLAQCKRYDQSYAVNQLTRACSKPARAH 699
BLAST of mRNA_H-paniculata_contig46224.11550.1 vs. uniprot
Match: A0A6H5KG29_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG29_9PHAE) HSP 1 Score: 193 bits (490), Expect = 2.180e-56 Identity = 105/296 (35.47%), Postives = 161/296 (54.39%), Query Frame = 1
Query: 1 VIGTRWVFKVKADGKFKARLVVQGWSQKHGIDCGSTFAPVCTLENQRLLLVLATAKGWTVYALDVQVTFLDGKLKESVFCKQAPS----------FKKTDSSTGQPYVMSSKRLIYGFRQSPNVWNHTIDNELRSMGFTPTISDPCVYSKGSNDTYIMPSLFIDDLLVTGSTDKLLMDVRNQL---FTITDLGEVSLILGIEV-----------SQHKYALSILDRFNMSSANPTKTPGIKTDPNAAGNSGNLLDAAATKEYQTLVASFIFLTQCTRFDICFSVIQAARFMSAPTQ 816
++GT++VFK K +G+FKARLVV G Q+ G D G ++APVC + + R+ W +Y LDV FL+ V+ + AP +S+TG+P V +R +YG QSP + N T+D L G+ T SDPCVY S + ++ ++++DD+L+TG +L+ + +L F +TD+GEV ILGI+V SQ Y ++L+RF M ANP TPG + + +L K YQ++ S ++L QCTRFD+ ++ +Q ++ S P Q
Sbjct: 24 ILGTKFVFKKKLEGRFKARLVVGGHRQEPGQDYGHSYAPVCRIGSIRMTCATGCHNNWPIYQLDVVGAFLNALCDRDVYVRPAPGTXXXXXXXXXXSAKNSATGEPMVYKLERSLYGLSQSPALLNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDNKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQ 319
BLAST of mRNA_H-paniculata_contig46224.11550.1 vs. uniprot
Match: A0A6H5KWT4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWT4_9PHAE) HSP 1 Score: 198 bits (503), Expect = 6.920e-56 Identity = 106/277 (38.27%), Postives = 158/277 (57.04%), Query Frame = 1
Query: 4 IGTRWVFKVKADGKFKARLVVQGWSQKHGIDCGSTFAPVCTLENQRLLLVLATAKGWTVYALDVQVTFLDGKLKESVFCKQAPSFKKTDSSTGQPYVMSSKRLIYGFRQSPNVWNHTIDNELRSMGFTPTISDPCVYSKGSNDTYIMPSLFIDDLLVTGSTDKLLMDVRNQL---FTITDLGEVSLILGIEVSQHKYALSILDRFNMSSANPTKTPGIKTDPNAAGNSGNLLDAAATKEYQTLVASFIFLTQCTRFDICFSVIQAARFMSAPTQRHL 825
I ++WVFK KADG FK RLVVQGW+Q G+D GSTFAPVC L++ R+L A + +DV FL + E+VF +Q P F+ + G VM ++ +YG QSP+ W HTID L +GF P SD C+Y +D + +L++DDLL+ G + ++ +L F +TD+G V L+LG+E+ + + +RF MS PT TPG ++ + LL T YQ +V +++ Q R+DI ++ Q AR M+ P++ H+
Sbjct: 97 IKSKWVFKRKADGSFKGRLVVQGWNQVPGLDYGSTFAPVCRLQSIRMLACTAVQFNLELDQMDVSTAFLYADILENVFVEQPPGFEVKNKDGGD-LVMQLQKSLYGLAQSPSNWFHTIDPLLVEIGFVPLKSDTCIYLYDHDDVQVYLTLYVDDLLLAGDNSNAISTIKKKLKQRFNMTDMGGVKLVLGMEIKRDRNQ----ERFGMSECKPTSTPGYGSELSKKQPEDTLLGEEETGRYQDIVGCLMYIAQVLRYDIMYATGQLARPMAKPSKIHM 368 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig46224.11550.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig46224.11550.1 >prot_H-paniculata_contig46224.11550.1 ID=prot_H-paniculata_contig46224.11550.1|Name=mRNA_H-paniculata_contig46224.11550.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=277bp VIGTRWVFKVKADGKFKARLVVQGWSQKHGIDCGSTFAPVCTLENQRLLLback to top mRNA from alignment at H-paniculata_contig46224:47..1157+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig46224.11550.1 ID=mRNA_H-paniculata_contig46224.11550.1|Name=mRNA_H-paniculata_contig46224.11550.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1111bp|location=Sequence derived from alignment at H-paniculata_contig46224:47..1157+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig46224:47..1157+ >mRNA_H-paniculata_contig46224.11550.1 ID=mRNA_H-paniculata_contig46224.11550.1|Name=mRNA_H-paniculata_contig46224.11550.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1662bp|location=Sequence derived from alignment at H-paniculata_contig46224:47..1157+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |