mRNA_H-paniculata_contig4614.11530.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig4614.11530.1 vs. uniprot
Match: D8LDD0_ECTSI (PA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDD0_ECTSI) HSP 1 Score: 344 bits (883), Expect = 1.420e-105 Identity = 286/648 (44.14%), Postives = 338/648 (52.16%), Query Frame = 1
Query: 25 GDLLIAVNGVHFASMSLIDWIESATAESAGTLSSLT-LSESRTAMFPLVDVEVSSRGTS-----------KLSTGKARQEYSCSAGS-NDKECFTSSVKEARSDATMKKRDD-NELESTAGSGSAFPLVAFLRVELVGLDGAEVTFRPGGSRRKALLQELADRRAAEQKACHRVATEAKAGLDAKRKAEVEANLKVEGAANVQAERQVREKAAAEKAIEDKRQEDARVRRXXXXXXXXXXXXXXXXXXXXXXGKKIDFSAKYKEVAPMGLTFDLANPLAVVSEVVLGGTSHQEGVQVGDHLVRVNDRDTSEMKPTAALKLLQRAIWPRVLTFSTPEINEMERADEPRLLDLVVTEPAVVRGVYLIQAPKDWGGLGGXXXXXNSTAESNWPCEPQLMAVADPPIACQLKLSLSR---EIPSGEETGVVMVKRGKCTFVEKAKNVQ-----------------SALAGATGGREEKAGIFEGGG----------------------------MVVLNGEDSLADMPAGNLLTDDVIIPVAMISKRNGSSLEMLLSWGVDVRARIAPVGACPLQGISIVPEIEAPMKKVRIVSDNAGRFLVLSKGAGGAEFDYHQARYGP-----ETIPDGVHAIVMADPLDGCDDKAYRV 1767
GDLL+ VN + +S+SL +WIE + A T + S +R A+FPLVDV GTS S+ C+A ND C + E R A +E+TAG F L FL+VELVGLDGAEVTFRPG +R L+++ D AAE+K R EAKA L+A XXXXXXXXXXXXXXXXXXXXXXGK+ F+A+YKEVAPMGLTFDLAN LAVVSEV GG S GV++GDHLVRVN+RDTSEMKPTAALK VRG YL+QAPKDWGGL G A+ +W CEP+ MA++DPP ACQ L L ++ G E + +VKRG CTFVEKAKNVQ +ALAG KA MV+LNG+D+LADMPAGNLLTDDV IPVAMIS+ NGSS+E LLSWGV+VRA I+P GACPL S P + K R D+ GRFLVLSK GG EF+Y ARYGP E P AI +ADP+DGC+DKAY+V
Sbjct: 78 GDLLVKVNDIPLSSISLNEWIEQSMATILATHQPASDSSTARLAIFPLVDVTSDGGGTSTKHPQSHPSNSSASSDDGFGNQRCAAAQLNDPMCIALASGEGRPTAGADAASPPGTMENTAG----FRLKGFLKVELVGLDGAEVTFRPGEARIAELIKQRNDAAAAERKEKERALAEAKALLEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKEFTFTAEYKEVAPMGLTFDLANLLAVVSEVTAGGLSDIAGVKIGDHLVRVNERDTSEMKPTAALK---------------------------------------VRGEYLMQAPKDWGGLRGASE--EDVAQPSWSCEPRSMALSDPPPACQRNLRLLSGGVQVGDGREPVIALVKRGVCTFVEKAKNVQVAVLNAVADTAAPPQDTTALAGEDVITSTKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMVLLNGDDALADMPAGNLLTDDVNIPVAMISRGNGSSVEALLSWGVEVRAAISPYGACPLP--SPTPSADEQGAKARKDDDDGGRFLVLSKAQGGREFNYRLARYGPGVGDAEASP---VAIAVADPIDGCEDKAYKV 675
BLAST of mRNA_H-paniculata_contig4614.11530.1 vs. uniprot
Match: A0A835ZE01_9STRA (PDZ domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE01_9STRA) HSP 1 Score: 195 bits (496), Expect = 1.700e-50 Identity = 133/361 (36.84%), Postives = 182/361 (50.42%), Query Frame = 1
Query: 739 GKKIDFSAKYKEVAPMGLTFDLANPLAVVSEVVLGGTSHQEGVQVGDHLVRVNDRDTSEMKPTAALKLLQRAIWPRVLTFSTPEINEMERADEPRLLDLVVTEPAVVRGVYLIQAPKDWGGLGGXXXXXNSTAESNWP------CEPQLMAVADPPIAC---QLKLSLS-------REIPSGEETGVVMVKRGKCTFVEKAKNVQSALAGATGGREEKAGIFEGGGMVVLNGEDSLADMPAGNLLTDDVIIPVAMISKRNGSSLEMLLSWGVDVRARIAPVGACPLQGISIVPEIEAPMKKVRI--VSDNAGRFLVLSKGAGGAEFDYHQARYGPETIPDGVHAIVMADPLDGCDDKAYRV 1767
G+ ++ ++KE PMG+TFDLAN AV+ +V G + G++ GD LV VN DTS M P A + + RA WPR L+ + PE+ E+ PR ++LV+ +P +VRGVY ++AP DWG N C + V DP C Q +SL+ ++ G VV+V+RG C FV+KA NVQ+ L GA +VV N ++ L DMPAGNL T + IPVAM+ K + LE +L G+ +A G C + PE A K VR +D GR V+S G EFD+H A YGP V +V+A P D CD +A V
Sbjct: 255 GEGFVYTVEFKEAGPMGITFDLANTTAVIGDVARGSAAATLGIRAGDQLVEVNGVDTSGMGPERAGREVMRAEWPRRLSLTVPEV---EKPASPRDMELVILQPLLVRGVYALRAPNDWGADLPLAAVDNDXXXXXXXXXXXAVCSGVSVLVTDPDSGCATVQQAVSLAGGNFTAQADLSGG---AVVIVRRGSCPFVDKASNVQTLLGGAXXXXXXARSA-----VVVANTDNELVDMPAGNLPTAGITIPVAMMRKEDSFGLEQVLGVGMPCTGLLAAPGRCAAPSLPR-PERGADGKPVRNRPATDVGGRLAVVS-ARGAREFDWHLALYGPHAPNGTVVNVVVASPSDACDAEALMV 602
BLAST of mRNA_H-paniculata_contig4614.11530.1 vs. uniprot
Match: A0A6V1PI75_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PI75_HETAK) HSP 1 Score: 159 bits (401), Expect = 3.600e-39 Identity = 113/333 (33.93%), Postives = 169/333 (50.75%), Query Frame = 1
Query: 787 GLTF--DLANPLAVVSEVVLGGTSHQEGVQVGDHLVRVNDRDTSEMKPTAALKLLQRAIWPRVLTFSTPEINEMERADEPRL---LDLVVTEPAVVRGVYLIQAPKDWGGLGGXXXXXNSTAESNWPCEPQLMAVADPPIACQLKLSLSREIPSGEETGVVMVKRGKCTFVEKAKNVQSALAGATGGREEKAGIFEGGGM-VVLNGEDSLADMPAGNLLTDDVIIPVAMISKRNGSSLEMLLSWGVDVRARIAPVGACPLQGISIVPEIEAPMKKVRIVSDNAGRFLVLSKGAGGAEFDYHQARYGPETIPDGVHAIVMADPLDGCDDKAYRV 1767
G+ F D A P+ ++ L G H EGV+ GD L+ VN D +EM T + + A +P+VL F R +E R+ +L +T PA++ G + P+ WGG N TA PC P + ADP C+ KL+L + G ++ RG+CTFV+KA+ +Q A GG M VV+N +D++ DMPAG + TDD+ P+ MI K +G ++E +LS G V A +AP C Q +S ++ K R+ D+ G +++S G FD+ A +GP + V+ V ADP DGCD + ++V
Sbjct: 50 GIAFAEDAARPIVASADPALKG--HAEGVRKGDGLISVNGIDVTEMVMTDVISKIMSAEFPKVLVFQV-----FARGEEVRVQSHFELFITSPALLAGQPAARRPERWGG--------NITAFD--PCAPVSLGFADPRTGCR-KLTLPTD-EDGNIAPIITAVRGECTFVDKARTIQEA----------------GGQMIVVVNQDDTVMDMPAGRMTTDDISAPIVMIGKTDGENIEKVLSMGYHVTAALAPQHLCD-QVVS--SPLQQQNKPPRMKEDSGGGLILMSPGFS-KTFDFADALFGPPAKDNIVYQFVYADPNDGCDPEKFQV 343 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4614.11530.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4614.11530.1 >prot_H-paniculata_contig4614.11530.1 ID=prot_H-paniculata_contig4614.11530.1|Name=mRNA_H-paniculata_contig4614.11530.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=591bp QGTSPVHVGDLLIAVNGVHFASMSLIDWIESATAESAGTLSSLTLSESRTback to top mRNA from alignment at H-paniculata_contig4614:7648..15269+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4614.11530.1 ID=mRNA_H-paniculata_contig4614.11530.1|Name=mRNA_H-paniculata_contig4614.11530.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7622bp|location=Sequence derived from alignment at H-paniculata_contig4614:7648..15269+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4614:7648..15269+ >mRNA_H-paniculata_contig4614.11530.1 ID=mRNA_H-paniculata_contig4614.11530.1|Name=mRNA_H-paniculata_contig4614.11530.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3546bp|location=Sequence derived from alignment at H-paniculata_contig4614:7648..15269+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |