prot_H-paniculata_contig4614.11530.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig4614.11530.1
Unique Nameprot_H-paniculata_contig4614.11530.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length591
Homology
BLAST of mRNA_H-paniculata_contig4614.11530.1 vs. uniprot
Match: D8LDD0_ECTSI (PA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDD0_ECTSI)

HSP 1 Score: 344 bits (883), Expect = 1.420e-105
Identity = 286/648 (44.14%), Postives = 338/648 (52.16%), Query Frame = 0
Query:    9 GDLLIAVNGVHFASMSLIDWIESATAESAGTLSSLT-LSESRTAMFPLVDVEVSSRGTS-----------KLSTGKARQEYSCSAGS-NDKECFTSSVKEARSDATMKKRDD-NELESTAGSGSAFPLVAFLRVELVGLDGAEVTFRPGGSRRKALLQELADRRAAEQKACHRVATEAKAGLDAKRKAEVEANLKVEGAANVQAERQVREKAAAEKAIEDKRQEDARVRRXXXXXXXXXXXXXXXXXXXXXXGKKIDFSAKYKEVAPMGLTFDLANPLAVVSEVVLGGTSHQEGVQVGDHLVRVNDRDTSEMKPTAALKLLQRAIWPRVLTFSTPEINEMERADEPRLLDLVVTEPAVVRGVYLIQAPKDWGGLGGXXXXXNSTAESNWPCEPQLMAVADPPIACQLKLSLSR---EIPSGEETGVVMVKRGKCTFVEKAKNVQ-----------------SALAGATGGREEKAGIFEGGG----------------------------MVVLNGEDSLADMPAGNLLTDDVIIPVAMISKRNGSSLEMLLSWGVDVRARIAPVGACPLQGISIVPEIEAPMKKVRIVSDNAGRFLVLSKGAGGAEFDYHQARYGP-----ETIPDGVHAIVMADPLDGCDDKAYRV 589
            GDLL+ VN +  +S+SL +WIE + A    T    +  S +R A+FPLVDV     GTS             S+        C+A   ND  C   +  E R  A          +E+TAG    F L  FL+VELVGLDGAEVTFRPG +R   L+++  D  AAE+K   R   EAKA L+A                                              XXXXXXXXXXXXXXXXXXXXXXGK+  F+A+YKEVAPMGLTFDLAN LAVVSEV  GG S   GV++GDHLVRVN+RDTSEMKPTAALK                                       VRG YL+QAPKDWGGL G        A+ +W CEP+ MA++DPP ACQ  L L     ++  G E  + +VKRG CTFVEKAKNVQ                 +ALAG       KA                                   MV+LNG+D+LADMPAGNLLTDDV IPVAMIS+ NGSS+E LLSWGV+VRA I+P GACPL   S  P  +    K R   D+ GRFLVLSK  GG EF+Y  ARYGP     E  P    AI +ADP+DGC+DKAY+V
Sbjct:   78 GDLLVKVNDIPLSSISLNEWIEQSMATILATHQPASDSSTARLAIFPLVDVTSDGGGTSTKHPQSHPSNSSASSDDGFGNQRCAAAQLNDPMCIALASGEGRPTAGADAASPPGTMENTAG----FRLKGFLKVELVGLDGAEVTFRPGEARIAELIKQRNDAAAAERKEKERALAEAKALLEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKEFTFTAEYKEVAPMGLTFDLANLLAVVSEVTAGGLSDIAGVKIGDHLVRVNERDTSEMKPTAALK---------------------------------------VRGEYLMQAPKDWGGLRGASE--EDVAQPSWSCEPRSMALSDPPPACQRNLRLLSGGVQVGDGREPVIALVKRGVCTFVEKAKNVQVAVLNAVADTAAPPQDTTALAGEDVITSTKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMVLLNGDDALADMPAGNLLTDDVNIPVAMISRGNGSSVEALLSWGVEVRAAISPYGACPLP--SPTPSADEQGAKARKDDDDGGRFLVLSKAQGGREFNYRLARYGPGVGDAEASP---VAIAVADPIDGCEDKAYKV 675          
BLAST of mRNA_H-paniculata_contig4614.11530.1 vs. uniprot
Match: A0A835ZE01_9STRA (PDZ domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE01_9STRA)

HSP 1 Score: 195 bits (496), Expect = 1.700e-50
Identity = 133/361 (36.84%), Postives = 182/361 (50.42%), Query Frame = 0
Query:  247 GKKIDFSAKYKEVAPMGLTFDLANPLAVVSEVVLGGTSHQEGVQVGDHLVRVNDRDTSEMKPTAALKLLQRAIWPRVLTFSTPEINEMERADEPRLLDLVVTEPAVVRGVYLIQAPKDWGGLGGXXXXXNSTAESNWP------CEPQLMAVADPPIAC---QLKLSLS-------REIPSGEETGVVMVKRGKCTFVEKAKNVQSALAGATGGREEKAGIFEGGGMVVLNGEDSLADMPAGNLLTDDVIIPVAMISKRNGSSLEMLLSWGVDVRARIAPVGACPLQGISIVPEIEAPMKKVRI--VSDNAGRFLVLSKGAGGAEFDYHQARYGPETIPDGVHAIVMADPLDGCDDKAYRV 589
            G+   ++ ++KE  PMG+TFDLAN  AV+ +V  G  +   G++ GD LV VN  DTS M P  A + + RA WPR L+ + PE+   E+   PR ++LV+ +P +VRGVY ++AP DWG         N              C    + V DP   C   Q  +SL+        ++  G    VV+V+RG C FV+KA NVQ+ L GA               +VV N ++ L DMPAGNL T  + IPVAM+ K +   LE +L  G+     +A  G C    +   PE  A  K VR    +D  GR  V+S   G  EFD+H A YGP      V  +V+A P D CD +A  V
Sbjct:  255 GEGFVYTVEFKEAGPMGITFDLANTTAVIGDVARGSAAATLGIRAGDQLVEVNGVDTSGMGPERAGREVMRAEWPRRLSLTVPEV---EKPASPRDMELVILQPLLVRGVYALRAPNDWGADLPLAAVDNDXXXXXXXXXXXAVCSGVSVLVTDPDSGCATVQQAVSLAGGNFTAQADLSGG---AVVIVRRGSCPFVDKASNVQTLLGGAXXXXXXARSA-----VVVANTDNELVDMPAGNLPTAGITIPVAMMRKEDSFGLEQVLGVGMPCTGLLAAPGRCAAPSLPR-PERGADGKPVRNRPATDVGGRLAVVS-ARGAREFDWHLALYGPHAPNGTVVNVVVASPSDACDAEALMV 602          
BLAST of mRNA_H-paniculata_contig4614.11530.1 vs. uniprot
Match: A0A6V1PI75_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PI75_HETAK)

HSP 1 Score: 159 bits (401), Expect = 3.600e-39
Identity = 113/333 (33.93%), Postives = 169/333 (50.75%), Query Frame = 0
Query:  263 GLTF--DLANPLAVVSEVVLGGTSHQEGVQVGDHLVRVNDRDTSEMKPTAALKLLQRAIWPRVLTFSTPEINEMERADEPRL---LDLVVTEPAVVRGVYLIQAPKDWGGLGGXXXXXNSTAESNWPCEPQLMAVADPPIACQLKLSLSREIPSGEETGVVMVKRGKCTFVEKAKNVQSALAGATGGREEKAGIFEGGGM-VVLNGEDSLADMPAGNLLTDDVIIPVAMISKRNGSSLEMLLSWGVDVRARIAPVGACPLQGISIVPEIEAPMKKVRIVSDNAGRFLVLSKGAGGAEFDYHQARYGPETIPDGVHAIVMADPLDGCDDKAYRV 589
            G+ F  D A P+   ++  L G  H EGV+ GD L+ VN  D +EM  T  +  +  A +P+VL F         R +E R+    +L +T PA++ G    + P+ WGG        N TA    PC P  +  ADP   C+ KL+L  +   G    ++   RG+CTFV+KA+ +Q A                GG M VV+N +D++ DMPAG + TDD+  P+ MI K +G ++E +LS G  V A +AP   C  Q +S    ++   K  R+  D+ G  +++S G     FD+  A +GP    + V+  V ADP DGCD + ++V
Sbjct:   50 GIAFAEDAARPIVASADPALKG--HAEGVRKGDGLISVNGIDVTEMVMTDVISKIMSAEFPKVLVFQV-----FARGEEVRVQSHFELFITSPALLAGQPAARRPERWGG--------NITAFD--PCAPVSLGFADPRTGCR-KLTLPTD-EDGNIAPIITAVRGECTFVDKARTIQEA----------------GGQMIVVVNQDDTVMDMPAGRMTTDDISAPIVMIGKTDGENIEKVLSMGYHVTAALAPQHLCD-QVVS--SPLQQQNKPPRMKEDSGGGLILMSPGFS-KTFDFADALFGPPAKDNIVYQFVYADPNDGCDPEKFQV 343          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4614.11530.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LDD0_ECTSI1.420e-10544.14PA domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A835ZE01_9STRA1.700e-5036.84PDZ domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A6V1PI75_HETAK3.600e-3933.93Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 198..235
NoneNo IPR availableGENE3D2.30.42.10coord: 225..336
e-value: 1.4E-7
score: 33.2
NoneNo IPR availableGENE3D3.50.30.30coord: 378..510
e-value: 2.2E-11
score: 45.7
IPR001478PDZ domainSMARTSM00228pdz_newcoord: 260..327
e-value: 0.0012
score: 28.2
IPR001478PDZ domainPFAMPF00595PDZcoord: 270..316
e-value: 3.9E-5
score: 23.9
IPR001478PDZ domainPROSITEPS50106PDZcoord: 249..318
score: 9.33
IPR036034PDZ superfamilySUPERFAMILY50156PDZ domain-likecoord: 256..325

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4614contigH-paniculata_contig4614:7648..15269 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4614.11530.1mRNA_H-paniculata_contig4614.11530.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig4614 7648..15269 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig4614.11530.1 ID=prot_H-paniculata_contig4614.11530.1|Name=mRNA_H-paniculata_contig4614.11530.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=591bp
QGTSPVHVGDLLIAVNGVHFASMSLIDWIESATAESAGTLSSLTLSESRT
AMFPLVDVEVSSRGTSKLSTGKARQEYSCSAGSNDKECFTSSVKEARSDA
TMKKRDDNELESTAGSGSAFPLVAFLRVELVGLDGAEVTFRPGGSRRKAL
LQELADRRAAEQKACHRVATEAKAGLDAKRKAEVEANLKVEGAANVQAER
QVREKAAAEKAIEDKRQEDARVRREEEAAKKAAKKSKMDVANMRREGKKI
DFSAKYKEVAPMGLTFDLANPLAVVSEVVLGGTSHQEGVQVGDHLVRVND
RDTSEMKPTAALKLLQRAIWPRVLTFSTPEINEMERADEPRLLDLVVTEP
AVVRGVYLIQAPKDWGGLGGGGGGGNSTAESNWPCEPQLMAVADPPIACQ
LKLSLSREIPSGEETGVVMVKRGKCTFVEKAKNVQSALAGATGGREEKAG
IFEGGGMVVLNGEDSLADMPAGNLLTDDVIIPVAMISKRNGSSLEMLLSW
GVDVRARIAPVGACPLQGISIVPEIEAPMKKVRIVSDNAGRFLVLSKGAG
GAEFDYHQARYGPETIPDGVHAIVMADPLDGCDDKAYRVS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001478PDZ
IPR036034PDZ_sf