mRNA_H-paniculata_contig4611.11527.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4611.11527.1
Unique NamemRNA_H-paniculata_contig4611.11527.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig4611.11527.1 vs. uniprot
Match: A0A6H5L589_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L589_9PHAE)

HSP 1 Score: 145 bits (365), Expect = 2.890e-35
Identity = 85/193 (44.04%), Postives = 115/193 (59.59%), Query Frame = 1 
Query:  505 PVRPAVGSLI**SGMMRPDIASAVWVVDRQSHNPTDRHWKAAVKIISYLERTKDLGLVFERGSELNMPVYVDADYADRSNWRHSVSGVAVMVGGSVVSATSTIQHCATLSTGEADYAAMAQGLRQHFS*EPCKSSFSHNFLAGRSRCLETTRGQWQPSLPGVKKKKKMAMAKNPTSTGRSKHIDVRCHFIREL 1083
            PVR A+GS++  S   RPDI  AV  V R +H P +RHWKA VKI++YL+ T+DLG+ ++RGS L + VYVDA YAD  + R SVSG+A  VGG+V+S  S  Q   +LS+ EA+Y A  +G+++        S  +        + LE  +G              MA+ +NP S+ RSKHIDVR HFIR L
Sbjct:  161 PVREAIGSMMWVSTFTRPDICFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYKRGSGLGLEVYVDASYADAED-RRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGA-------------MALVQNPLSSARSKHIDVRYHFIRGL 339
[Close]
BLAST of mRNA_H-paniculata_contig4611.11527.1 vs. uniprot
Match: A0A6H5JKS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKS3_9PHAE)

HSP 1 Score: 150 bits (379), Expect = 4.090e-35
Identity = 86/193 (44.56%), Postives = 116/193 (60.10%), Query Frame = 1 
Query:  505 PVRPAVGSLI**SGMMRPDIASAVWVVDRQSHNPTDRHWKAAVKIISYLERTKDLGLVFERGSELNMPVYVDADYADRSNWRHSVSGVAVMVGGSVVSATSTIQHCATLSTGEADYAAMAQGLRQHFS*EPCKSSFSHNFLAGRSRCLETTRGQWQPSLPGVKKKKKMAMAKNPTSTGRSKHIDVRCHFIREL 1083
            PVR A+G L+  +   RPDIA+A+  V R +H PT R WKA V+I+SYL  T DLG+ + RGS L++ VYVDA YADR   R SV+G+AV VGG+VVS  S  Q   +LST EA+Y A  +G+++        S  +      + + LE  +G              +++ +NP S+ RSKHIDVR HFIREL
Sbjct: 1025 PVRQAIGCLMWPATFTRPDIATALNAVQRNAHAPTMRDWKALVQILSYLNATMDLGITYVRGSGLDLEVYVDASYADRDTGRRSVTGIAVTVGGTVVSHASKTQRIVSLSTSEAEYIAAGEGVKEALFVRAVLSFIAPETSGAKIKVLEDNQGA-------------ISLVQNPFSSARSKHIDVRFHFIREL 1204
[Close]
BLAST of mRNA_H-paniculata_contig4611.11527.1 vs. uniprot
Match: A0A6H5L175_9PHAE (Uncharacterized protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L175_9PHAE)

HSP 1 Score: 150 bits (379), Expect = 4.670e-35
Identity = 86/193 (44.56%), Postives = 116/193 (60.10%), Query Frame = 1 
Query:  505 PVRPAVGSLI**SGMMRPDIASAVWVVDRQSHNPTDRHWKAAVKIISYLERTKDLGLVFERGSELNMPVYVDADYADRSNWRHSVSGVAVMVGGSVVSATSTIQHCATLSTGEADYAAMAQGLRQHFS*EPCKSSFSHNFLAGRSRCLETTRGQWQPSLPGVKKKKKMAMAKNPTSTGRSKHIDVRCHFIREL 1083
            PVR A+G L+  +   RPDIA+A+  V R +H PT R WKA V+I+SYL  T DLG+ + RGS L++ VYVDA YADR   R SV+G+AV VGG+VVS  S  Q   +LST EA+Y A  +G+++        S  +      + + LE  +G              +++ +NP S+ RSKHIDVR HFIREL
Sbjct: 1578 PVRQAIGCLMWPATFTRPDIATALNAVQRNAHAPTMRDWKALVQILSYLNATMDLGITYVRGSGLDLEVYVDASYADRDTGRRSVTGIAVTVGGTVVSHASKTQRIVSLSTSEAEYIAAGEGVKEALFVRAVLSFIAPETSGAKIKVLEDNQGA-------------ISLVQNPFSSARSKHIDVRFHFIREL 1757
[Close]
BLAST of mRNA_H-paniculata_contig4611.11527.1 vs. uniprot
Match: A0A6H5JCG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG0_9PHAE)

HSP 1 Score: 147 bits (370), Expect = 8.430e-35
Identity = 86/193 (44.56%), Postives = 116/193 (60.10%), Query Frame = 1 
Query:  505 PVRPAVGSLI**SGMMRPDIASAVWVVDRQSHNPTDRHWKAAVKIISYLERTKDLGLVFERGSELNMPVYVDADYADRSNWRHSVSGVAVMVGGSVVSATSTIQHCATLSTGEADYAAMAQGLRQHFS*EPCKSSFSHNFLAGRSRCLETTRGQWQPSLPGVKKKKKMAMAKNPTSTGRSKHIDVRCHFIREL 1083
            PVR A+GS++  S   RPDI+ AV  V R +H P +RHWKA VKI++YL+ T+DLG+ +ERGS L + VYVDA YAD  + R SVSG+A  VGG+V+S  S  Q   +LS+ EA+Y A  +G+++        S  +        + LE  +G              MA+ +NP S+ RSKHIDVR HFIR L
Sbjct:  289 PVREAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVDASYADAED-RRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGA-------------MALVQNPLSSARSKHIDVRYHFIRGL 467
[Close]
BLAST of mRNA_H-paniculata_contig4611.11527.1 vs. uniprot
Match: A0A6H5KGX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGX6_9PHAE)

HSP 1 Score: 147 bits (370), Expect = 1.330e-34
Identity = 86/193 (44.56%), Postives = 116/193 (60.10%), Query Frame = 1 
Query:  505 PVRPAVGSLI**SGMMRPDIASAVWVVDRQSHNPTDRHWKAAVKIISYLERTKDLGLVFERGSELNMPVYVDADYADRSNWRHSVSGVAVMVGGSVVSATSTIQHCATLSTGEADYAAMAQGLRQHFS*EPCKSSFSHNFLAGRSRCLETTRGQWQPSLPGVKKKKKMAMAKNPTSTGRSKHIDVRCHFIREL 1083
            PVR A+GS++  S   RPDI+ AV  V R +H P +RHWKA VKI++YL+ T+DLG+ +ERGS L + VYVDA YAD  + R SVSG+A  VGG+V+S  S  Q   +LS+ EA+Y A  +G+++        S  +        + LE  +G              MA+ +NP S+ RSKHIDVR HFIR L
Sbjct:  376 PVREAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVDASYADAED-RRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGA-------------MALVQNPLSSARSKHIDVRYHFIRGL 554
[Close]
BLAST of mRNA_H-paniculata_contig4611.11527.1 vs. uniprot
Match: A0A6H5L715_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L715_9PHAE)

HSP 1 Score: 147 bits (370), Expect = 6.490e-34
Identity = 86/193 (44.56%), Postives = 116/193 (60.10%), Query Frame = 1 
Query:  505 PVRPAVGSLI**SGMMRPDIASAVWVVDRQSHNPTDRHWKAAVKIISYLERTKDLGLVFERGSELNMPVYVDADYADRSNWRHSVSGVAVMVGGSVVSATSTIQHCATLSTGEADYAAMAQGLRQHFS*EPCKSSFSHNFLAGRSRCLETTRGQWQPSLPGVKKKKKMAMAKNPTSTGRSKHIDVRCHFIREL 1083
            PVR A+GS++  S   RPDI+ AV  V R +H P +RHWKA VKI++YL+ T+DLG+ +ERGS L + VYVDA YAD  + R SVSG+A  VGG+V+S  S  Q   +LS+ EA+Y A  +G+++        S  +        + LE  +G              MA+ +NP S+ RSKHIDVR HFIR L
Sbjct: 1355 PVREAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVDASYADAED-RRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGA-------------MALVQNPLSSARSKHIDVRYHFIRGL 1533
[Close]
BLAST of mRNA_H-paniculata_contig4611.11527.1 vs. uniprot
Match: A0A6H5LGF7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LGF7_9PHAE)

HSP 1 Score: 147 bits (370), Expect = 6.850e-34
Identity = 86/193 (44.56%), Postives = 116/193 (60.10%), Query Frame = 1 
Query:  505 PVRPAVGSLI**SGMMRPDIASAVWVVDRQSHNPTDRHWKAAVKIISYLERTKDLGLVFERGSELNMPVYVDADYADRSNWRHSVSGVAVMVGGSVVSATSTIQHCATLSTGEADYAAMAQGLRQHFS*EPCKSSFSHNFLAGRSRCLETTRGQWQPSLPGVKKKKKMAMAKNPTSTGRSKHIDVRCHFIREL 1083
            PVR A+GS++  S   RPDI+ AV  V R +H P +RHWKA VKI++YL+ T+DLG+ +ERGS L + VYVDA YAD  + R SVSG+A  VGG+V+S  S  Q   +LS+ EA+Y A  +G+++        S  +        + LE  +G              MA+ +NP S+ RSKHIDVR HFIR L
Sbjct: 1678 PVREAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLEVYVDASYADAED-RRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGA-------------MALVQNPLSSARSKHIDVRYHFIRGL 1856
[Close]
BLAST of mRNA_H-paniculata_contig4611.11527.1 vs. uniprot
Match: A0A6H5JNN1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNN1_9PHAE)

HSP 1 Score: 147 bits (370), Expect = 6.900e-34
Identity = 86/193 (44.56%), Postives = 116/193 (60.10%), Query Frame = 1 
Query:  505 PVRPAVGSLI**SGMMRPDIASAVWVVDRQSHNPTDRHWKAAVKIISYLERTKDLGLVFERGSELNMPVYVDADYADRSNWRHSVSGVAVMVGGSVVSATSTIQHCATLSTGEADYAAMAQGLRQHFS*EPCKSSFSHNFLAGRSRCLETTRGQWQPSLPGVKKKKKMAMAKNPTSTGRSKHIDVRCHFIREL 1083
            PVR A+GS++  S   RPDI+ AV  V R +H P +RHWKA VKI++YL+ T+DLG+ +ERGS L + VYVDA YAD  + R SVSG+A  VGG+V+S  S  Q   +LS+ EA+Y A  +G+++        S  +        + LE  +G              MA+ +NP S+ RSKHIDVR HFIR L
Sbjct: 1453 PVREAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVDASYADAED-RRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGA-------------MALVQNPLSSARSKHIDVRYHFIRGL 1631
[Close]
BLAST of mRNA_H-paniculata_contig4611.11527.1 vs. uniprot
Match: A0A6H5KPN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPN5_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 1.660e-33
Identity = 82/193 (42.49%), Postives = 111/193 (57.51%), Query Frame = 1 
Query:  505 PVRPAVGSLI**SGMMRPDIASAVWVVDRQSHNPTDRHWKAAVKIISYLERTKDLGLVFERGSELNMPVYVDADYADRSNWRHSVSGVAVMVGGSVVSATSTIQHCATLSTGEADYAAMAQGLRQHFS*EPCKSSFSHNFLAGRSRCLETTRGQWQPSLPGVKKKKKMAMAKNPTSTGRSKHIDVRCHFIREL 1083
            PVR A+GS++  S   RPD++ AV  V R +H P  RHW A  KI+ YL+ T+DLG+ ++RGS L + VYVDA YAD  + R SVSG+A  VGG+VVS  S  Q   +LS  EA+Y A   G+++       +S           + LE  +G              +A+ +NP S+GR+KHIDVR HFIR L
Sbjct:   38 PVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSATEAEYIAAEDGVKEALFVRAVQSFVVPETSGSSIQVLEDNQGA-------------IALVQNPLSSGRTKHIDVRFHFIRGL 216
[Close]
BLAST of mRNA_H-paniculata_contig4611.11527.1 vs. uniprot
Match: A0A6H5K4H5_9PHAE (CCHC-type domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4H5_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 1.900e-33
Identity = 85/193 (44.04%), Postives = 116/193 (60.10%), Query Frame = 1 
Query:  505 PVRPAVGSLI**SGMMRPDIASAVWVVDRQSHNPTDRHWKAAVKIISYLERTKDLGLVFERGSELNMPVYVDADYADRSNWRHSVSGVAVMVGGSVVSATSTIQHCATLSTGEADYAAMAQGLRQHFS*EPCKSSFSHNFLAGRSRCLETTRGQWQPSLPGVKKKKKMAMAKNPTSTGRSKHIDVRCHFIREL 1083
            PVR A+GS++  S   RPDI+ AV  V R +H P +RHWKA VKI++YL+ T+DLG+ ++RGS L + VYVDA YAD  + R SVSG+A  VGG+V+S  S  Q   +LS+ EA+Y A  +G+++        S  +        + LE  +G              MA+ +NP S+ RSKHIDVR HFIR L
Sbjct:  975 PVREAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYKRGSGLGLEVYVDASYADAED-RRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGA-------------MALVQNPLSSARSKHIDVRYHFIRGL 1153
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4611.11527.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L589_9PHAE2.890e-3544.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JKS3_9PHAE4.090e-3544.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L175_9PHAE4.670e-3544.56Uncharacterized protein n=9 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCG0_9PHAE8.430e-3544.56Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KGX6_9PHAE1.330e-3444.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L715_9PHAE6.490e-3444.56CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5LGF7_9PHAE6.850e-3444.56Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNN1_9PHAE6.900e-3444.56CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KPN5_9PHAE1.660e-3342.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4H5_9PHAE1.900e-3344.04CCHC-type domain-containing protein n=11 Tax=Ectoc... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4611contigH-paniculata_contig4611:2..1468 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score89.4
Seed ortholog evalue1.2e-15
Seed eggNOG ortholog3885.XP_007153038.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.mitochondrial protein AtMg00810-like
EggNOG OGs3884A@33090,3GPQE@35493,4JUNV@91835,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelfabids
Best eggNOG OGNA|NA|NA
Exons1
Model size1467
Cds size345
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4611.11527.1prot_H-paniculata_contig4611.11527.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4611 548..892 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930377.9044704-UTR-H-paniculata_contig4611:1..5471622930377.9044704-UTR-H-paniculata_contig4611:1..547Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4611 2..547 +
1691481264.631047-UTR-H-paniculata_contig4611:1..5471691481264.631047-UTR-H-paniculata_contig4611:1..547Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4611 2..547 +
1622930377.9632761-UTR-H-paniculata_contig4611:892..14681622930377.9632761-UTR-H-paniculata_contig4611:892..1468Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4611 893..1468 +
1691481264.6508596-UTR-H-paniculata_contig4611:892..14681691481264.6508596-UTR-H-paniculata_contig4611:892..1468Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4611 893..1468 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930377.9343736-CDS-H-paniculata_contig4611:547..8921622930377.9343736-CDS-H-paniculata_contig4611:547..892Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4611 548..892 +
1691481264.6417375-CDS-H-paniculata_contig4611:547..8921691481264.6417375-CDS-H-paniculata_contig4611:547..892Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4611 548..892 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4611.11527.1

>prot_H-paniculata_contig4611.11527.1 ID=prot_H-paniculata_contig4611.11527.1|Name=mRNA_H-paniculata_contig4611.11527.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=115bp
MMRPDIASAVWVVDRQSHNPTDRHWKAAVKIISYLERTKDLGLVFERGSE
LNMPVYVDADYADRSNWRHSVSGVAVMVGGSVVSATSTIQHCATLSTGEA
DYAAMAQGLRQHFS*
back to top

mRNA from alignment at H-paniculata_contig4611:2..1468+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4611.11527.1 ID=mRNA_H-paniculata_contig4611.11527.1|Name=mRNA_H-paniculata_contig4611.11527.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1467bp|location=Sequence derived from alignment at H-paniculata_contig4611:2..1468+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGGGCTCCCCCACTCTGTCACTTACATCTGCTTCCCTAAACGGGACCT
GTGATAAAGAAGTCATGTAAACTCCTCTTTGTCAGTCCAGACACCAATAG
GCTTCAAGAGCCTAGGAGATATCCAATAGAATATGGTCAAAGCGCCTCGT
AGAAATACTCGTGGATAAAGTCGGCATGGCGCAATCCAAGCCTGACCCTT
GCGTGTTCAGGCTGGAGATACGTGGAGTGGTAGATATGATTTTGTGTGGT
CATGTAGATGATATGATTGGTTCTGGTAAGAGTGTGGAGTGTGATTCCCT
GTTTGCAGCGATAAGGGCGGAGTTCCAAACCACGGGAGGCGAGCTCAAGT
GGTACCTAGGTGAGGGGGGTTGTCCGCATCATGTAACGGACATTCATTGA
TACTGCCATTAAACGTTTTGGCGTGGAAACCGAATCTAACCTTCCTGCGT
CTCAGCAGGCAGATCTTGGTCCTAGGAGGGAAGATGAGGAGTTGTCTGAC
AAGCCCTGTGCGCCCGGCTGTGGGGAGTTTGATATAGTGAAGTGGTATGA
TGAGACCTGATATAGCCAGTGCGGTATGGGTAGTAGACAGGCAATCCCAC
AATCCTACAGACAGGCACTGGAAAGCAGCGGTGAAAATAATCTCGTACCT
CGAAAGAACGAAAGACTTAGGGTTAGTGTTCGAAAGGGGTAGTGAGCTTA
ATATGCCAGTGTATGTAGACGCAGATTATGCAGACAGGTCCAACTGGAGG
CACTCGGTGTCAGGCGTGGCAGTAATGGTAGGGGGGAGTGTAGTGAGCGC
CACCAGCACAATACAACACTGCGCGACGCTTTCCACTGGTGAGGCAGATT
ATGCAGCTATGGCGCAAGGGCTAAGACAACACTTTTCATAAGAGCCGTGC
AAGAGTTCTTTCAGCCACAACTTTTTGGCAGGGAGGTCACGATGTTTGGA
GACAACCAGGGGGCAATGGCAGCCTAGCCTTCCGGGGGTTAAAAAAAAAA
AAAAAATGGCTATGGCTAAGAATCCCACTAGCACAGGCAGGAGCAAGCAC
ATAGATGTAAGATGTCATTTCATTCGAGAGTTAGTGGCAAGGAAAATCTT
GGGGATACACAGTACCAAAAGATTGAAGATCAGCCGGCTGTCATTCTGAC
CAAGCCGCTTGAACGCGGGCCGTTTGAACGACATCGGCTTTTCTTGATAA
TTTTGCCTGAACAATGGCTGTTTTCGCTATAATTTTCTTATTGTAGTAGG
CGTTATAACGCGATGCTACTTTCAAATTGCCGTTGAGCGGGGAGGATTTT
TGCCCGGAGGACGGGTTTCCCTTGCACTATCATATGTTGAACGTAATACT
GGGGGAGAAGTGAACATTCGAATTATGCCTTCTGTAGTCACTGAAGCGCG
ATGCAGGGAAGGCGTTTGAGTTGCGTCTAACTTTCAGTAACCGCGGTTCC
TGTTGTGGGTTCTGGGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig4611:2..1468+

>mRNA_H-paniculata_contig4611.11527.1 ID=mRNA_H-paniculata_contig4611.11527.1|Name=mRNA_H-paniculata_contig4611.11527.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=690bp|location=Sequence derived from alignment at H-paniculata_contig4611:2..1468+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGAGACCTGATATAGCCAGTGCGGTATGGGTAGTAGACAGGCAATC
CCACAATCCTACAGACAGGCACTGGAAAGCAGCGGTGAAAATAATCTCGT
ACCTCGAAAGAACGAAAGACTTAGGGTTAGTGTTCGAAAGGGGTAGTGAG
CTTAATATGCCAGTGTATGTAGACGCAGATTATGCAGACAGGTCCAACTG
GAGGCACTCGGTGTCAGGCGTGGCAGTAATGGTAGGGGGGAGTGTAGTGA
GCGCCACCAGCACAATACAACACTGCGCGACGCTTTCCACTGGTGAGGCA
GATTATGCAGCTATGGCGCAAGGGCTAAGACAACACTTTTCATAAATGAT
GAGACCTGATATAGCCAGTGCGGTATGGGTAGTAGACAGGCAATCCCACA
ATCCTACAGACAGGCACTGGAAAGCAGCGGTGAAAATAATCTCGTACCTC
GAAAGAACGAAAGACTTAGGGTTAGTGTTCGAAAGGGGTAGTGAGCTTAA
TATGCCAGTGTATGTAGACGCAGATTATGCAGACAGGTCCAACTGGAGGC
ACTCGGTGTCAGGCGTGGCAGTAATGGTAGGGGGGAGTGTAGTGAGCGCC
ACCAGCACAATACAACACTGCGCGACGCTTTCCACTGGTGAGGCAGATTA
TGCAGCTATGGCGCAAGGGCTAAGACAACACTTTTCATAA
back to top