prot_H-paniculata_contig4611.11527.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig4611.11527.1
Unique Nameprot_H-paniculata_contig4611.11527.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length115
Homology
BLAST of mRNA_H-paniculata_contig4611.11527.1 vs. uniprot
Match: A0A6H5JKS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKS3_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 5.670e-28
Identity = 59/109 (54.13%), Postives = 77/109 (70.64%), Query Frame = 0
Query:    3 RPDIASAVWVVDRQSHNPTDRHWKAAVKIISYLERTKDLGLVFERGSELNMPVYVDADYADRSNWRHSVSGVAVMVGGSVVSATSTIQHCATLSTGEADYAAMAQGLRQ 111
            RPDIA+A+  V R +H PT R WKA V+I+SYL  T DLG+ + RGS L++ VYVDA YADR   R SV+G+AV VGG+VVS  S  Q   +LST EA+Y A  +G+++
Sbjct: 1041 RPDIATALNAVQRNAHAPTMRDWKALVQILSYLNATMDLGITYVRGSGLDLEVYVDASYADRDTGRRSVTGIAVTVGGTVVSHASKTQRIVSLSTSEAEYIAAGEGVKE 1149          
BLAST of mRNA_H-paniculata_contig4611.11527.1 vs. uniprot
Match: A0A6H5L175_9PHAE (Uncharacterized protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L175_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 5.750e-28
Identity = 59/109 (54.13%), Postives = 77/109 (70.64%), Query Frame = 0
Query:    3 RPDIASAVWVVDRQSHNPTDRHWKAAVKIISYLERTKDLGLVFERGSELNMPVYVDADYADRSNWRHSVSGVAVMVGGSVVSATSTIQHCATLSTGEADYAAMAQGLRQ 111
            RPDIA+A+  V R +H PT R WKA V+I+SYL  T DLG+ + RGS L++ VYVDA YADR   R SV+G+AV VGG+VVS  S  Q   +LST EA+Y A  +G+++
Sbjct: 1594 RPDIATALNAVQRNAHAPTMRDWKALVQILSYLNATMDLGITYVRGSGLDLEVYVDASYADRDTGRRSVTGIAVTVGGTVVSHASKTQRIVSLSTSEAEYIAAGEGVKE 1702          
BLAST of mRNA_H-paniculata_contig4611.11527.1 vs. uniprot
Match: A0A6H5JSK5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSK5_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 6.200e-24
Identity = 53/109 (48.62%), Postives = 75/109 (68.81%), Query Frame = 0
Query:    3 RPDIASAVWVVDRQSHNPTDRHWKAAVKIISYLERTKDLGLVFERGSELNMPVYVDADYADRSNWRHSVSGVAVMVGGSVVSATSTIQHCATLSTGEADYAAMAQGLRQ 111
            RPD++ AV  V R +H P  RHW A  KI+ YL+ T+DLG+ ++RGS L + VYVDA YAD  + +HS+SG+A  VGG+VVS  S  Q   +LS+ EA+Y A  +G+++
Sbjct:  638 RPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTED-KHSLSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKE 745          
BLAST of mRNA_H-paniculata_contig4611.11527.1 vs. uniprot
Match: A0A6H5KR64_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR64_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 1.330e-23
Identity = 50/109 (45.87%), Postives = 75/109 (68.81%), Query Frame = 0
Query:    3 RPDIASAVWVVDRQSHNPTDRHWKAAVKIISYLERTKDLGLVFERGSELNMPVYVDADYADRSNWRHSVSGVAVMVGGSVVSATSTIQHCATLSTGEADYAAMAQGLRQ 111
            RPDIA  +  + + +H+PT+R W A V+I+SYL  TKDLG+ + RGS L++ V+VD+ YAD +  R S +G+AV VGG+VV A++  Q     ST EA+Y A  +G+++
Sbjct:    7 RPDIALPLNKLQKIAHSPTERMWNALVRIMSYLNETKDLGIAYVRGSGLDLDVFVDSSYADSTVDRRSTTGLAVTVGGTVVCASTKTQPVTAQSTTEAEYIAAGEGVKE 115          
BLAST of mRNA_H-paniculata_contig4611.11527.1 vs. uniprot
Match: A0A6H5JRV3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRV3_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 1.620e-23
Identity = 50/109 (45.87%), Postives = 75/109 (68.81%), Query Frame = 0
Query:    3 RPDIASAVWVVDRQSHNPTDRHWKAAVKIISYLERTKDLGLVFERGSELNMPVYVDADYADRSNWRHSVSGVAVMVGGSVVSATSTIQHCATLSTGEADYAAMAQGLRQ 111
            RPDIA  +  + + +H+PT+R W A V+I+SYL  TKDLG+ + RGS L++ V+VD+ YAD +  R S +G+AV VGG+VV A++  Q     ST EA+Y A  +G+++
Sbjct:   75 RPDIALPLNKLQKIAHSPTERKWNALVRILSYLNETKDLGITYVRGSGLDLDVFVDSSYADSTVDRRSTTGLAVTVGGTVVCASTKTQPVTAQSTTEAEYIAAGEGVKE 183          
BLAST of mRNA_H-paniculata_contig4611.11527.1 vs. uniprot
Match: A0A6H5KKB4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKB4_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 1.920e-23
Identity = 51/109 (46.79%), Postives = 75/109 (68.81%), Query Frame = 0
Query:    3 RPDIASAVWVVDRQSHNPTDRHWKAAVKIISYLERTKDLGLVFERGSELNMPVYVDADYADRSNWRHSVSGVAVMVGGSVVSATSTIQHCATLSTGEADYAAMAQGLRQ 111
            RPDIA  +  + + +H+PT+R W A V+I+SYL  TKDLG+ + RGS L++ V+VD+ YAD +  R S +G+AV VGG+VV A++  Q     ST EA+Y A  +GL++
Sbjct:  168 RPDIALPLNKLQKIAHSPTERMWNALVRIMSYLNETKDLGITYVRGSGLDLDVFVDSSYADSTVDRRSTTGLAVTVGGTVVCASTKTQPVTAQSTTEAEYIAAGEGLKE 276          
BLAST of mRNA_H-paniculata_contig4611.11527.1 vs. uniprot
Match: A0A6H5JSU5_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSU5_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 2.100e-23
Identity = 54/111 (48.65%), Postives = 74/111 (66.67%), Query Frame = 0
Query:    3 RPDIASAVWVVDRQSHNPTDRHWKAAVKIISYLERTKDLGLVFERGSELNMPVYVDADYADRSNWRHSVSGVAVMVGGSVVSATSTIQHCATLSTGEADYAAMAQGLRQHF 113
            RPD++ AV  V   +H P  RHW A  KI+ YL+ T+D+G+ ++RGS L + VYVDA YAD  N R SVSG+A MVGG+VVS  S  +   +LS+ EA Y A  +G+++ F
Sbjct:  527 RPDVSFAVRAVACHAHAPAKRHWDAIQKILGYLKETRDVGITYKRGSGLELAVYVDASYADTEN-RRSVSGLATMVGGTVVSHGSKTKSIVSLSSTEAKYIAAGEGVKEAF 636          
BLAST of mRNA_H-paniculata_contig4611.11527.1 vs. uniprot
Match: A0A6H5K887_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K887_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 2.510e-23
Identity = 50/109 (45.87%), Postives = 75/109 (68.81%), Query Frame = 0
Query:    3 RPDIASAVWVVDRQSHNPTDRHWKAAVKIISYLERTKDLGLVFERGSELNMPVYVDADYADRSNWRHSVSGVAVMVGGSVVSATSTIQHCATLSTGEADYAAMAQGLRQ 111
            RPDIA  +  + + +H+PT+R W A V+I+SYL  TKDLG+ + RGS L++ V+VD+ YAD +  R S +G+AV VGG+VV A++  Q     ST EA+Y A  +G+++
Sbjct:    7 RPDIALPLNKLQKIAHSPTERMWNALVRIMSYLNETKDLGITYVRGSGLDLDVFVDSSYADSTVDRRSTTGLAVTVGGTVVCASTKTQPVTAQSTTEAEYIAAGEGVKE 115          
BLAST of mRNA_H-paniculata_contig4611.11527.1 vs. uniprot
Match: A0A6H5J8G4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8G4_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 4.250e-23
Identity = 50/110 (45.45%), Postives = 72/110 (65.45%), Query Frame = 0
Query:    1 MMRPDIASAVWVVDRQSHNPTDRHWKAAVKIISYLERTKDLGLVFERGSELNMPVYVDADYADRSNWRHSVSGVAVMVGGSVVSATSTIQHCATLSTGEADYAAMAQGLR 110
            + RPDIA  +  + + +H+PT R W A V+I+SYL  TKD G+ + RGS L++ V+VDA YAD    R S +G+AV VGG+VV A++  Q     ST EA+Y A  +G++
Sbjct:   47 LTRPDIALPLNKLQKIAHSPTGRIWNALVRIMSYLNFTKDFGITYVRGSRLDLSVFVDASYADNEVDRRSTTGLAVTVGGTVVCASTKTQPVTAQSTSEAEYMAAGEGVK 156          
BLAST of mRNA_H-paniculata_contig4611.11527.1 vs. uniprot
Match: A0A6H5KCN6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCN6_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 5.810e-23
Identity = 51/110 (46.36%), Postives = 76/110 (69.09%), Query Frame = 0
Query:    2 MRPDIASAVWVVDRQSHNPTDRHWKAAVKIISYLERTKDLGLVFERGSELNMPVYVDADYADRSNWRHSVSGVAVMVGGSVVSATSTIQHCATLSTGEADYAAMAQGLRQ 111
            MRPDIA  +  + + +H+PT+R W A V+I+SYL  TKDLG+ + RGS L++ V+VD+ YAD +  R S +G+AV VGG+VV A++  Q     ST EA+Y A  +G+++
Sbjct:  207 MRPDIALPLNKLQKIAHSPTERMWNALVRIMSYLNETKDLGITYVRGSGLDLDVFVDSSYADSTVDRRSTTGLAVTVGGTVVCASTKTQPVTAQSTTEAEYIAAGEGVKE 316          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4611.11527.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JKS3_9PHAE5.670e-2854.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L175_9PHAE5.750e-2854.13Uncharacterized protein n=9 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JSK5_9PHAE6.200e-2448.62Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KR64_9PHAE1.330e-2345.87Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRV3_9PHAE1.620e-2345.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KKB4_9PHAE1.920e-2346.79Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JSU5_9PHAE2.100e-2348.65Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K887_9PHAE2.510e-2345.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J8G4_9PHAE4.250e-2345.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCN6_9PHAE5.810e-2346.36Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR11439:SF275coord: 3..108
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 3..108

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4611contigH-paniculata_contig4611:548..892 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4611.11527.1mRNA_H-paniculata_contig4611.11527.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig4611 2..1468 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig4611.11527.1 ID=prot_H-paniculata_contig4611.11527.1|Name=mRNA_H-paniculata_contig4611.11527.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=115bp
MMRPDIASAVWVVDRQSHNPTDRHWKAAVKIISYLERTKDLGLVFERGSE
LNMPVYVDADYADRSNWRHSVSGVAVMVGGSVVSATSTIQHCATLSTGEA
DYAAMAQGLRQHFS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR039537Retrotran_Ty1/copia-like