mRNA_H-paniculata_contig4610.11523.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig4610.11523.1 vs. uniprot
Match: UPI002015416C (E3 SUMO-protein ligase ZBED1-like n=1 Tax=Alosa alosa TaxID=278164 RepID=UPI002015416C) HSP 1 Score: 79.0 bits (193), Expect = 9.130e-15 Identity = 36/112 (32.14%), Postives = 68/112 (60.71%), Query Frame = 1
Query: 4 VQEMTNGKRCGVTTDLWTNLNNEWFVSPTVHYITAEWEMTSLVLERSPFEERHTGENTAKGMEAILERHGLSDDDIEGAVTDDANDVIAKLRDYTNITRFTCMANTFDLCAK 339
++EM +G++ +TTD W++L E +V+ T H+I +WEM ++VL+ S + HT EN + +++IL + + + + TD+A + + + + IT CMA+T +L A+
Sbjct: 164 IREMLHGEKLSLTTDGWSSLATESYVTVTAHFIDEDWEMRNVVLDTSKLQTAHTAENVSTCIDSILRDYHIEQESVLVITTDNAMNYVNAVEQHLGITDIPCMAHTINLAAR 275
BLAST of mRNA_H-paniculata_contig4610.11523.1 vs. uniprot
Match: A0A8C5FDW4_GADMO (BED-type domain-containing protein n=2 Tax=Gadus morhua TaxID=8049 RepID=A0A8C5FDW4_GADMO) HSP 1 Score: 78.2 bits (191), Expect = 1.630e-14 Identity = 36/112 (32.14%), Postives = 66/112 (58.93%), Query Frame = 1
Query: 4 VQEMTNGKRCGVTTDLWTNLNNEWFVSPTVHYITAEWEMTSLVLERSPFEERHTGENTAKGMEAILERHGLSDDDIEGAVTDDANDVIAKLRDYTNITRFTCMANTFDLCAK 339
++EM G++ G+TTD W++L E +V+ T H+I +WEM ++VL+ S + HT N + ++ +L+ + + + TD+A + + + Y IT CMA+T +L A+
Sbjct: 169 IREMLCGEKLGLTTDGWSSLATESYVTVTAHFIDEDWEMRNVVLDMSELQTAHTAANVSACIDKVLQEFQVPRESVLAITTDNATNYVNAVERYLRITDIPCMAHTINLAAR 280
BLAST of mRNA_H-paniculata_contig4610.11523.1 vs. uniprot
Match: A0A164JQ32_9CRUS (BED-type domain-containing protein (Fragment) n=1 Tax=Daphnia magna TaxID=35525 RepID=A0A164JQ32_9CRUS) HSP 1 Score: 74.3 bits (181), Expect = 2.760e-13 Identity = 40/113 (35.40%), Postives = 63/113 (55.75%), Query Frame = 1
Query: 1 VVQEMTNGKRCGVTTDLWTNLNNEWFVSPTVHYITAEWEMTSLVLERSPFEERHTGENTAKGMEAILERHGLSDDDIEGAVTDDANDVIAKLRDYTNITRFTCMANTFDLCAK 339
+V+E+ K+ +TTD WT++NNE +++ TVHY++ + +M S VL EE HT N AK + I+ L + I VTD+A +++ + D N C A+T L K
Sbjct: 194 LVKELEGIKQVALTTDCWTSINNEGYMTVTVHYLSDKLKMVSRVLNTIMIEESHTAVNLAKELRKIVTEWNLMNK-ISAVVTDNAANIVKAVSDINNWRHVPCFAHTLSLAVK 305
BLAST of mRNA_H-paniculata_contig4610.11523.1 vs. uniprot
Match: A0A8C9Z4Z2_SANLU (Uncharacterized protein n=1 Tax=Sander lucioperca TaxID=283035 RepID=A0A8C9Z4Z2_SANLU) HSP 1 Score: 70.5 bits (171), Expect = 8.650e-12 Identity = 32/112 (28.57%), Postives = 63/112 (56.25%), Query Frame = 1
Query: 4 VQEMTNGKRCGVTTDLWTNLNNEWFVSPTVHYITAEWEMTSLVLERSPFEERHTGENTAKGMEAILERHGLSDDDIEGAVTDDANDVIAKLRDYTNITRFTCMANTFDLCAK 339
+++M +GK+ +TTD WT+L E +V+ T H+I +WE+ ++L+ + ++ HT EN A+ + L + +S + + TD+ + I + + CMA+T +L +
Sbjct: 140 IRQMISGKKIALTTDGWTSLATEAYVTVTAHFIDNDWELKDVILKMAEVQKSHTAENVAECISNTLGEYNVSCESVLSITTDNTANYINAVERHLQAVNVPCMAHTINLAVR 251
BLAST of mRNA_H-paniculata_contig4610.11523.1 vs. uniprot
Match: UPI00146D9A61 (zinc finger BED domain-containing protein 1-like n=1 Tax=Pseudochaenichthys georgianus TaxID=52239 RepID=UPI00146D9A61) HSP 1 Score: 70.1 bits (170), Expect = 1.150e-11 Identity = 38/108 (35.19%), Postives = 59/108 (54.63%), Query Frame = 1
Query: 7 QEMTNGKRCGVTTDLWTNLNNEWFVSPTVHYITAEWEMTSLVLERSPFEERHTGENTAKGMEAILERHGLSDDDIEGAVTDDANDVIAKLRDYTNITRFTCMANTFDL 330
+ ++ + +TTD WT L E +V+ T HYI +EWEM S VL+ ERHT EN A+G+ + E G+ + + V D+A++V +Y + C A+T L
Sbjct: 18 RSLSTVSKVSITTDGWTALTTESYVTITCHYIDSEWEMKSAVLQTRATPERHTAENLAEGLRSATESWGILEK-VTACVHDNASNVTLANNEYLDWDSSPCYAHTLQL 124
BLAST of mRNA_H-paniculata_contig4610.11523.1 vs. uniprot
Match: H2ZWK5_LATCH (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Latimeria chalumnae TaxID=7897 RepID=H2ZWK5_LATCH) HSP 1 Score: 70.1 bits (170), Expect = 1.160e-11 Identity = 36/114 (31.58%), Postives = 63/114 (55.26%), Query Frame = 1
Query: 10 EMTNGKRCGVTTDLWTNLNNEWFVSPTVHYITAEWEMTSLVLERSPFEERHTGENTAKGMEAILERHGLSDDDIEGAVTDDANDVIA---KLRDYTNITRFTCMANTFDLCAKH 342
E+ ++ +T+D+WT+L E ++S T H+IT +W++ S+ L P ERHTGEN +E +LE+ L I V D+ +++A KL++ + C+ +T L +
Sbjct: 76 ELKTPEKIALTSDIWTSLATETYMSVTAHFITKDWQLKSINLAIKPLSERHTGENIVTFIEEVLEKFELEPSCICALVCDNGVNMVAAARKLKEKYSWANIRCVGHTIQLVVNN 189
BLAST of mRNA_H-paniculata_contig4610.11523.1 vs. uniprot
Match: UPI00146EC970 (zinc finger BED domain-containing protein 1-like n=2 Tax=Trematomus bernacchii TaxID=40690 RepID=UPI00146EC970) HSP 1 Score: 70.1 bits (170), Expect = 1.190e-11 Identity = 38/108 (35.19%), Postives = 59/108 (54.63%), Query Frame = 1
Query: 7 QEMTNGKRCGVTTDLWTNLNNEWFVSPTVHYITAEWEMTSLVLERSPFEERHTGENTAKGMEAILERHGLSDDDIEGAVTDDANDVIAKLRDYTNITRFTCMANTFDL 330
+ ++ + +TTD WT L E +V+ T HYI +EWEM S VL+ ERHT EN A+G+ + E G+ + + V D+A++V +Y + C A+T L
Sbjct: 142 RSLSTVSKVSITTDGWTALTTESYVTITCHYIDSEWEMKSAVLQTRATPERHTAENLAEGLRSATESWGILEK-VTACVHDNASNVTLANNEYLDWDSSPCYAHTLQL 248
BLAST of mRNA_H-paniculata_contig4610.11523.1 vs. uniprot
Match: UPI0005212532 (zinc finger BED domain-containing protein 1-like n=1 Tax=Ciona intestinalis TaxID=7719 RepID=UPI0005212532) HSP 1 Score: 69.7 bits (169), Expect = 1.620e-11 Identity = 32/102 (31.37%), Postives = 59/102 (57.84%), Query Frame = 1
Query: 34 GVTTDLWTNLNNEWFVSPTVHYITAEWEMTSLVLERSPFEERHTGENTAKGMEAILERHGLSDDDIEGAVTDDANDVIAKLRDYTNITRFTCMANTFDLCAK 339
G+TTD+WT++ N+ +++ TVH+IT +W+M VL E +T EN + + +L + ++ + I VTD+ ++ + + T+ +C A+T LC K
Sbjct: 185 GITTDMWTSIRNDSYITVTVHWITDDWKMQHGVLTTECMTEANTAENLSLRLTDVLAEYRITSNKISATVTDNGRNIKKAVDLLDDWTQLSCFAHTLQLCVK 286
BLAST of mRNA_H-paniculata_contig4610.11523.1 vs. uniprot
Match: A0A6G0IE79_LARCR (Uncharacterized protein n=1 Tax=Larimichthys crocea TaxID=215358 RepID=A0A6G0IE79_LARCR) HSP 1 Score: 68.9 bits (167), Expect = 2.900e-11 Identity = 30/112 (26.79%), Postives = 63/112 (56.25%), Query Frame = 1
Query: 4 VQEMTNGKRCGVTTDLWTNLNNEWFVSPTVHYITAEWEMTSLVLERSPFEERHTGENTAKGMEAILERHGLSDDDIEGAVTDDANDVIAKLRDYTNITRFTCMANTFDLCAK 339
+++M +G+ +TTD WT++ E +V+ T H+I +WE+ ++L+ + ++ HT E+ A+ + IL + + + TD+A + I + + + CMA+T +L +
Sbjct: 72 IKKMLSGENISLTTDGWTSIATEAYVTVTAHFINEDWELKDIILKTAEVQKTHTAEHVAECIANILGEYNVRPQSVLSITTDNAANYINAVERHLQVANVPCMAHTINLAVR 183
BLAST of mRNA_H-paniculata_contig4610.11523.1 vs. uniprot
Match: A0A6G0IJ18_LARCR (Uncharacterized protein n=5 Tax=Larimichthys crocea TaxID=215358 RepID=A0A6G0IJ18_LARCR) HSP 1 Score: 68.9 bits (167), Expect = 2.950e-11 Identity = 30/112 (26.79%), Postives = 63/112 (56.25%), Query Frame = 1
Query: 4 VQEMTNGKRCGVTTDLWTNLNNEWFVSPTVHYITAEWEMTSLVLERSPFEERHTGENTAKGMEAILERHGLSDDDIEGAVTDDANDVIAKLRDYTNITRFTCMANTFDLCAK 339
+++M +G+ +TTD WT++ E +V+ T H+I +WE+ ++L+ + ++ HT E+ A+ + IL + + + TD+A + I + + + CMA+T +L +
Sbjct: 114 IKKMLSGENISLTTDGWTSIATEAYVTVTAHFINEDWELKDIILKTAEVQKTHTAEHVAECIANILGEYNVRPQSVLSITTDNAANYINAVERHLQVANVPCMAHTINLAVR 225 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4610.11523.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4610.11523.1 >prot_H-paniculata_contig4610.11523.1 ID=prot_H-paniculata_contig4610.11523.1|Name=mRNA_H-paniculata_contig4610.11523.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=112bp MTNGKRCGVTTDLWTNLNNEWFVSPTVHYITAEWEMTSLVLERSPFEERHback to top mRNA from alignment at H-paniculata_contig4610:4443..4790+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4610.11523.1 ID=mRNA_H-paniculata_contig4610.11523.1|Name=mRNA_H-paniculata_contig4610.11523.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=348bp|location=Sequence derived from alignment at H-paniculata_contig4610:4443..4790+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4610:4443..4790+ >mRNA_H-paniculata_contig4610.11523.1 ID=mRNA_H-paniculata_contig4610.11523.1|Name=mRNA_H-paniculata_contig4610.11523.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=672bp|location=Sequence derived from alignment at H-paniculata_contig4610:4443..4790+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |