mRNA_H-paniculata_contig4610.11523.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4610.11523.1
Unique NamemRNA_H-paniculata_contig4610.11523.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig4610.11523.1 vs. uniprot
Match: UPI002015416C (E3 SUMO-protein ligase ZBED1-like n=1 Tax=Alosa alosa TaxID=278164 RepID=UPI002015416C)

HSP 1 Score: 79.0 bits (193), Expect = 9.130e-15
Identity = 36/112 (32.14%), Postives = 68/112 (60.71%), Query Frame = 1
Query:    4 VQEMTNGKRCGVTTDLWTNLNNEWFVSPTVHYITAEWEMTSLVLERSPFEERHTGENTAKGMEAILERHGLSDDDIEGAVTDDANDVIAKLRDYTNITRFTCMANTFDLCAK 339
            ++EM +G++  +TTD W++L  E +V+ T H+I  +WEM ++VL+ S  +  HT EN +  +++IL  + +  + +    TD+A + +  +  +  IT   CMA+T +L A+
Sbjct:  164 IREMLHGEKLSLTTDGWSSLATESYVTVTAHFIDEDWEMRNVVLDTSKLQTAHTAENVSTCIDSILRDYHIEQESVLVITTDNAMNYVNAVEQHLGITDIPCMAHTINLAAR 275          
BLAST of mRNA_H-paniculata_contig4610.11523.1 vs. uniprot
Match: A0A8C5FDW4_GADMO (BED-type domain-containing protein n=2 Tax=Gadus morhua TaxID=8049 RepID=A0A8C5FDW4_GADMO)

HSP 1 Score: 78.2 bits (191), Expect = 1.630e-14
Identity = 36/112 (32.14%), Postives = 66/112 (58.93%), Query Frame = 1
Query:    4 VQEMTNGKRCGVTTDLWTNLNNEWFVSPTVHYITAEWEMTSLVLERSPFEERHTGENTAKGMEAILERHGLSDDDIEGAVTDDANDVIAKLRDYTNITRFTCMANTFDLCAK 339
            ++EM  G++ G+TTD W++L  E +V+ T H+I  +WEM ++VL+ S  +  HT  N +  ++ +L+   +  + +    TD+A + +  +  Y  IT   CMA+T +L A+
Sbjct:  169 IREMLCGEKLGLTTDGWSSLATESYVTVTAHFIDEDWEMRNVVLDMSELQTAHTAANVSACIDKVLQEFQVPRESVLAITTDNATNYVNAVERYLRITDIPCMAHTINLAAR 280          
BLAST of mRNA_H-paniculata_contig4610.11523.1 vs. uniprot
Match: A0A164JQ32_9CRUS (BED-type domain-containing protein (Fragment) n=1 Tax=Daphnia magna TaxID=35525 RepID=A0A164JQ32_9CRUS)

HSP 1 Score: 74.3 bits (181), Expect = 2.760e-13
Identity = 40/113 (35.40%), Postives = 63/113 (55.75%), Query Frame = 1
Query:    1 VVQEMTNGKRCGVTTDLWTNLNNEWFVSPTVHYITAEWEMTSLVLERSPFEERHTGENTAKGMEAILERHGLSDDDIEGAVTDDANDVIAKLRDYTNITRFTCMANTFDLCAK 339
            +V+E+   K+  +TTD WT++NNE +++ TVHY++ + +M S VL     EE HT  N AK +  I+    L +  I   VTD+A +++  + D  N     C A+T  L  K
Sbjct:  194 LVKELEGIKQVALTTDCWTSINNEGYMTVTVHYLSDKLKMVSRVLNTIMIEESHTAVNLAKELRKIVTEWNLMNK-ISAVVTDNAANIVKAVSDINNWRHVPCFAHTLSLAVK 305          
BLAST of mRNA_H-paniculata_contig4610.11523.1 vs. uniprot
Match: A0A8C9Z4Z2_SANLU (Uncharacterized protein n=1 Tax=Sander lucioperca TaxID=283035 RepID=A0A8C9Z4Z2_SANLU)

HSP 1 Score: 70.5 bits (171), Expect = 8.650e-12
Identity = 32/112 (28.57%), Postives = 63/112 (56.25%), Query Frame = 1
Query:    4 VQEMTNGKRCGVTTDLWTNLNNEWFVSPTVHYITAEWEMTSLVLERSPFEERHTGENTAKGMEAILERHGLSDDDIEGAVTDDANDVIAKLRDYTNITRFTCMANTFDLCAK 339
            +++M +GK+  +TTD WT+L  E +V+ T H+I  +WE+  ++L+ +  ++ HT EN A+ +   L  + +S + +    TD+  + I  +  +       CMA+T +L  +
Sbjct:  140 IRQMISGKKIALTTDGWTSLATEAYVTVTAHFIDNDWELKDVILKMAEVQKSHTAENVAECISNTLGEYNVSCESVLSITTDNTANYINAVERHLQAVNVPCMAHTINLAVR 251          
BLAST of mRNA_H-paniculata_contig4610.11523.1 vs. uniprot
Match: UPI00146D9A61 (zinc finger BED domain-containing protein 1-like n=1 Tax=Pseudochaenichthys georgianus TaxID=52239 RepID=UPI00146D9A61)

HSP 1 Score: 70.1 bits (170), Expect = 1.150e-11
Identity = 38/108 (35.19%), Postives = 59/108 (54.63%), Query Frame = 1
Query:    7 QEMTNGKRCGVTTDLWTNLNNEWFVSPTVHYITAEWEMTSLVLERSPFEERHTGENTAKGMEAILERHGLSDDDIEGAVTDDANDVIAKLRDYTNITRFTCMANTFDL 330
            + ++   +  +TTD WT L  E +V+ T HYI +EWEM S VL+     ERHT EN A+G+ +  E  G+ +  +   V D+A++V     +Y +     C A+T  L
Sbjct:   18 RSLSTVSKVSITTDGWTALTTESYVTITCHYIDSEWEMKSAVLQTRATPERHTAENLAEGLRSATESWGILEK-VTACVHDNASNVTLANNEYLDWDSSPCYAHTLQL 124          
BLAST of mRNA_H-paniculata_contig4610.11523.1 vs. uniprot
Match: H2ZWK5_LATCH (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Latimeria chalumnae TaxID=7897 RepID=H2ZWK5_LATCH)

HSP 1 Score: 70.1 bits (170), Expect = 1.160e-11
Identity = 36/114 (31.58%), Postives = 63/114 (55.26%), Query Frame = 1
Query:   10 EMTNGKRCGVTTDLWTNLNNEWFVSPTVHYITAEWEMTSLVLERSPFEERHTGENTAKGMEAILERHGLSDDDIEGAVTDDANDVIA---KLRDYTNITRFTCMANTFDLCAKH 342
            E+   ++  +T+D+WT+L  E ++S T H+IT +W++ S+ L   P  ERHTGEN    +E +LE+  L    I   V D+  +++A   KL++  +     C+ +T  L   +
Sbjct:   76 ELKTPEKIALTSDIWTSLATETYMSVTAHFITKDWQLKSINLAIKPLSERHTGENIVTFIEEVLEKFELEPSCICALVCDNGVNMVAAARKLKEKYSWANIRCVGHTIQLVVNN 189          
BLAST of mRNA_H-paniculata_contig4610.11523.1 vs. uniprot
Match: UPI00146EC970 (zinc finger BED domain-containing protein 1-like n=2 Tax=Trematomus bernacchii TaxID=40690 RepID=UPI00146EC970)

HSP 1 Score: 70.1 bits (170), Expect = 1.190e-11
Identity = 38/108 (35.19%), Postives = 59/108 (54.63%), Query Frame = 1
Query:    7 QEMTNGKRCGVTTDLWTNLNNEWFVSPTVHYITAEWEMTSLVLERSPFEERHTGENTAKGMEAILERHGLSDDDIEGAVTDDANDVIAKLRDYTNITRFTCMANTFDL 330
            + ++   +  +TTD WT L  E +V+ T HYI +EWEM S VL+     ERHT EN A+G+ +  E  G+ +  +   V D+A++V     +Y +     C A+T  L
Sbjct:  142 RSLSTVSKVSITTDGWTALTTESYVTITCHYIDSEWEMKSAVLQTRATPERHTAENLAEGLRSATESWGILEK-VTACVHDNASNVTLANNEYLDWDSSPCYAHTLQL 248          
BLAST of mRNA_H-paniculata_contig4610.11523.1 vs. uniprot
Match: UPI0005212532 (zinc finger BED domain-containing protein 1-like n=1 Tax=Ciona intestinalis TaxID=7719 RepID=UPI0005212532)

HSP 1 Score: 69.7 bits (169), Expect = 1.620e-11
Identity = 32/102 (31.37%), Postives = 59/102 (57.84%), Query Frame = 1
Query:   34 GVTTDLWTNLNNEWFVSPTVHYITAEWEMTSLVLERSPFEERHTGENTAKGMEAILERHGLSDDDIEGAVTDDANDVIAKLRDYTNITRFTCMANTFDLCAK 339
            G+TTD+WT++ N+ +++ TVH+IT +W+M   VL      E +T EN +  +  +L  + ++ + I   VTD+  ++   +    + T+ +C A+T  LC K
Sbjct:  185 GITTDMWTSIRNDSYITVTVHWITDDWKMQHGVLTTECMTEANTAENLSLRLTDVLAEYRITSNKISATVTDNGRNIKKAVDLLDDWTQLSCFAHTLQLCVK 286          
BLAST of mRNA_H-paniculata_contig4610.11523.1 vs. uniprot
Match: A0A6G0IE79_LARCR (Uncharacterized protein n=1 Tax=Larimichthys crocea TaxID=215358 RepID=A0A6G0IE79_LARCR)

HSP 1 Score: 68.9 bits (167), Expect = 2.900e-11
Identity = 30/112 (26.79%), Postives = 63/112 (56.25%), Query Frame = 1
Query:    4 VQEMTNGKRCGVTTDLWTNLNNEWFVSPTVHYITAEWEMTSLVLERSPFEERHTGENTAKGMEAILERHGLSDDDIEGAVTDDANDVIAKLRDYTNITRFTCMANTFDLCAK 339
            +++M +G+   +TTD WT++  E +V+ T H+I  +WE+  ++L+ +  ++ HT E+ A+ +  IL  + +    +    TD+A + I  +  +  +    CMA+T +L  +
Sbjct:   72 IKKMLSGENISLTTDGWTSIATEAYVTVTAHFINEDWELKDIILKTAEVQKTHTAEHVAECIANILGEYNVRPQSVLSITTDNAANYINAVERHLQVANVPCMAHTINLAVR 183          
BLAST of mRNA_H-paniculata_contig4610.11523.1 vs. uniprot
Match: A0A6G0IJ18_LARCR (Uncharacterized protein n=5 Tax=Larimichthys crocea TaxID=215358 RepID=A0A6G0IJ18_LARCR)

HSP 1 Score: 68.9 bits (167), Expect = 2.950e-11
Identity = 30/112 (26.79%), Postives = 63/112 (56.25%), Query Frame = 1
Query:    4 VQEMTNGKRCGVTTDLWTNLNNEWFVSPTVHYITAEWEMTSLVLERSPFEERHTGENTAKGMEAILERHGLSDDDIEGAVTDDANDVIAKLRDYTNITRFTCMANTFDLCAK 339
            +++M +G+   +TTD WT++  E +V+ T H+I  +WE+  ++L+ +  ++ HT E+ A+ +  IL  + +    +    TD+A + I  +  +  +    CMA+T +L  +
Sbjct:  114 IKKMLSGENISLTTDGWTSIATEAYVTVTAHFINEDWELKDIILKTAEVQKTHTAEHVAECIANILGEYNVRPQSVLSITTDNAANYINAVERHLQVANVPCMAHTINLAVR 225          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4610.11523.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI002015416C9.130e-1532.14E3 SUMO-protein ligase ZBED1-like n=1 Tax=Alosa al... [more]
A0A8C5FDW4_GADMO1.630e-1432.14BED-type domain-containing protein n=2 Tax=Gadus m... [more]
A0A164JQ32_9CRUS2.760e-1335.40BED-type domain-containing protein (Fragment) n=1 ... [more]
A0A8C9Z4Z2_SANLU8.650e-1228.57Uncharacterized protein n=1 Tax=Sander lucioperca ... [more]
UPI00146D9A611.150e-1135.19zinc finger BED domain-containing protein 1-like n... [more]
H2ZWK5_LATCH1.160e-1131.58Dimer_Tnp_hAT domain-containing protein n=1 Tax=La... [more]
UPI00146EC9701.190e-1135.19zinc finger BED domain-containing protein 1-like n... [more]
UPI00052125321.620e-1131.37zinc finger BED domain-containing protein 1-like n... [more]
A0A6G0IE79_LARCR2.900e-1126.79Uncharacterized protein n=1 Tax=Larimichthys croce... [more]
A0A6G0IJ18_LARCR2.950e-1126.79Uncharacterized protein n=5 Tax=Larimichthys croce... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4610contigH-paniculata_contig4610:4443..4790 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score70.1
Seed ortholog evalue7.5e-10
Seed eggNOG ortholog7719.XP_009861011.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.hAT family C-terminal dimerisation region
EggNOG OGs39SKR@33154,3BBS9@33208,3CUF3@33213,4873K@7711,KOG1121@1,KOG1121@2759
COG Functional cat.L
Best tax levelChordata
Best eggNOG OGNA|NA|NA
Exons1
Model size348
Cds size336
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930377.7311072-UTR-H-paniculata_contig4610:4442..44541622930377.7311072-UTR-H-paniculata_contig4610:4442..4454Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4610 4443..4454 +
1691481264.5893247-UTR-H-paniculata_contig4610:4442..44541691481264.5893247-UTR-H-paniculata_contig4610:4442..4454Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4610 4443..4454 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930377.746685-CDS-H-paniculata_contig4610:4454..47901622930377.746685-CDS-H-paniculata_contig4610:4454..4790Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4610 4455..4790 +
1691481264.602519-CDS-H-paniculata_contig4610:4454..47901691481264.602519-CDS-H-paniculata_contig4610:4454..4790Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4610 4455..4790 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4610.11523.1prot_H-paniculata_contig4610.11523.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4610 4455..4790 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4610.11523.1

>prot_H-paniculata_contig4610.11523.1 ID=prot_H-paniculata_contig4610.11523.1|Name=mRNA_H-paniculata_contig4610.11523.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=112bp
MTNGKRCGVTTDLWTNLNNEWFVSPTVHYITAEWEMTSLVLERSPFEERH
TGENTAKGMEAILERHGLSDDDIEGAVTDDANDVIAKLRDYTNITRFTCM
ANTFDLCAKHL*
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mRNA from alignment at H-paniculata_contig4610:4443..4790+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4610.11523.1 ID=mRNA_H-paniculata_contig4610.11523.1|Name=mRNA_H-paniculata_contig4610.11523.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=348bp|location=Sequence derived from alignment at H-paniculata_contig4610:4443..4790+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCGTGCAAGAGATGACCAACGGGAAGCGGTGTGGGGTGACCACGGATCT ATGGACTAACCTTAACAACGAATGGTTCGTGTCGCCCACGGTGCACTACA TCACCGCGGAGTGGGAGATGACCAGTCTGGTACTCGAGCGCTCGCCGTTC GAAGAACGCCACACTGGCGAGAACACTGCGAAGGGGATGGAGGCAATCCT TGAGCGGCACGGACTCAGCGACGATGACATCGAGGGTGCGGTAACGGATG ACGCCAACGACGTCATCGCCAAGCTACGCGATTATACCAACATCACGCGC TTCACGTGCATGGCCAACACCTTCGACCTATGTGCGAAGCACCTGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig4610:4443..4790+

>mRNA_H-paniculata_contig4610.11523.1 ID=mRNA_H-paniculata_contig4610.11523.1|Name=mRNA_H-paniculata_contig4610.11523.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=672bp|location=Sequence derived from alignment at H-paniculata_contig4610:4443..4790+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACCAACGGGAAGCGGTGTGGGGTGACCACGGATCTATGGACTAACCT
TAACAACGAATGGTTCGTGTCGCCCACGGTGCACTACATCACCGCGGAGT
GGGAGATGACCAGTCTGGTACTCGAGCGCTCGCCGTTCGAAGAACGCCAC
ACTGGCGAGAACACTGCGAAGGGGATGGAGGCAATCCTTGAGCGGCACGG
ACTCAGCGACGATGACATCGAGGGTGCGGTAACGGATGACGCCAACGACG
TCATCGCCAAGCTACGCGATTATACCAACATCACGCGCTTCACGTGCATG
GCCAACACCTTCGACCTATGTGCGAAGCACCTGTGAATGACCAACGGGAA
GCGGTGTGGGGTGACCACGGATCTATGGACTAACCTTAACAACGAATGGT
TCGTGTCGCCCACGGTGCACTACATCACCGCGGAGTGGGAGATGACCAGT
CTGGTACTCGAGCGCTCGCCGTTCGAAGAACGCCACACTGGCGAGAACAC
TGCGAAGGGGATGGAGGCAATCCTTGAGCGGCACGGACTCAGCGACGATG
ACATCGAGGGTGCGGTAACGGATGACGCCAACGACGTCATCGCCAAGCTA
CGCGATTATACCAACATCACGCGCTTCACGTGCATGGCCAACACCTTCGA
CCTATGTGCGAAGCACCTGTGA
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