mRNA_H-paniculata_contig4610.11524.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4610.11524.1
Unique NamemRNA_H-paniculata_contig4610.11524.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4610.11524.1 vs. uniprot
Match: D7FRP4_ECTSI (Similar to Iron-containing Alcohol Dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRP4_ECTSI)

HSP 1 Score: 54.7 bits (130), Expect = 2.960e-5
Identity = 29/44 (65.91%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:  502 DLDALDNPASDKHYGDNRALQYGVS----SAVAGAANHFFSADT 621
            DL++L NPA +K YGDN ALQYGV+    +A AGAA+HFFSADT
Sbjct:   51 DLESLANPAKEKDYGDNSALQYGVTVGAEAAGAGAAHHFFSADT 94
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4610.11524.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FRP4_ECTSI2.960e-565.91Similar to Iron-containing Alcohol Dehydrogenase n... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4610contigH-paniculata_contig4610:7684..11074 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionSimilar to Iron-containing Alcohol Dehydrogenase
Ec32 orthologEc-00_003330.1
Exons3
Model size623
Cds size519
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4610.11524.1prot_H-paniculata_contig4610.11524.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4610 7786..11074 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930377.5651772-UTR-H-paniculata_contig4610:7683..77851622930377.5651772-UTR-H-paniculata_contig4610:7683..7785Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4610 7684..7785 +
1691481264.531497-UTR-H-paniculata_contig4610:7683..77851691481264.531497-UTR-H-paniculata_contig4610:7683..7785Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4610 7684..7785 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930377.5778189-CDS-H-paniculata_contig4610:7785..80471622930377.5778189-CDS-H-paniculata_contig4610:7785..8047Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4610 7786..8047 +
1691481264.5398993-CDS-H-paniculata_contig4610:7785..80471691481264.5398993-CDS-H-paniculata_contig4610:7785..8047Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4610 7786..8047 +
1622930377.5965724-CDS-H-paniculata_contig4610:9095..92331622930377.5965724-CDS-H-paniculata_contig4610:9095..9233Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4610 9096..9233 +
1691481264.5475695-CDS-H-paniculata_contig4610:9095..92331691481264.5475695-CDS-H-paniculata_contig4610:9095..9233Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4610 9096..9233 +
1622930377.620214-CDS-H-paniculata_contig4610:10955..110741622930377.620214-CDS-H-paniculata_contig4610:10955..11074Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4610 10956..11074 +
1691481264.5576751-CDS-H-paniculata_contig4610:10955..110741691481264.5576751-CDS-H-paniculata_contig4610:10955..11074Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4610 10956..11074 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4610.11524.1

>prot_H-paniculata_contig4610.11524.1 ID=prot_H-paniculata_contig4610.11524.1|Name=mRNA_H-paniculata_contig4610.11524.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=173bp
MAIYPAMRGSVASAAIVMMVLALMSPAQPFSLRPYKRMQPPPMPTAARAR
ARAIANSLSSAQPPDFPGGIFSCYESSPLRARRATATAEGAGSRKDGSRD
GGCGGGCRGGGCGRWCRGGTKLRLSAGSDEGIADLDALDNPASDKHYGDN
RALQYGVSSAVAGAANHFFSADT
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mRNA from alignment at H-paniculata_contig4610:7684..11074+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4610.11524.1 ID=mRNA_H-paniculata_contig4610.11524.1|Name=mRNA_H-paniculata_contig4610.11524.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3391bp|location=Sequence derived from alignment at H-paniculata_contig4610:7684..11074+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGAAATGTGCGGTAGTTCGAACACGCGGGGTTGTTTTGCTTGCAGCTGT
GCTGGCTGTGTTAACAAGAACGTGAAACGCTCACTAGCAAGCATAGAAGA
TCATGGCAATATATCCAGCAATGCGAGGCTCAGTAGCTTCCGCAGCAATA
GTAATGATGGTTCTGGCGTTGATGTCCCCAGCCCAACCGTTTTCCCTGCG
ACCTTACAAGCGGATGCAACCGCCGCCAATGCCGACAGCTGCGCGGGCAC
GGGCACGAGCGATTGCAAACTCTCTGTCGTCGGCACAGCCACCGGATTTT
CCCGGCGGCATATTCTCGTGCTATGAATCCTCGCCGTTGCGAGCCCGGAG
GGCGACTGCTACAGGTGATGATCGAACTGTTGGGGGCGGTACTGTCTGTG
GTGATGGCGGAAACATGTCATGCTCGACGATCAGTCATGATGATCTGGGC
GACCCAGAGATCCAAAAGATCATAACTCTAGACCTTTAGCCTCCATACCT
CGAAGTATATACGGTAGACTGTCCTGTGAGCTTCGTCCATATCCACCACG
CCCTGATGGATTCATTCGACAATATTCAGTCAACACAAATGTGCGGAGTA
TGGATACTTATAGCGAATGTCTGTTGGCAAGAAATGATGCCCTCTGACTC
GCAATTGTTGTCTGACCTCCAAAATGGTCTTTTTCGGGTACACCTATAAT
ACGGGTTCTTCTGTGCGCTGAATGTGTTCGGAAGCCAAATCTCACTTGAG
AGCCCTTGGATCCTCCACACATACCCTGTACTCCGCCTAAATTAGAAGCA
TCTGGATGCCTAACTGCCAACTTGCCTGAAGCTCTCTGTTGATTAAGGAA
ACAAGTCTGCCAAACATAGTCTGAGAGCATGTTCGTGAGACGGGAGAAGT
ACAATCTCACATATGCACAAGGGCAATTCGCGATTTGATAAGTATCATGC
ACATGTTTTCTGCTTTTGGGTAGCACCACCACCACCGCTGTCATCACCGT
CACCATCACCATCACCATCACCATCACCACGAAAAAGTGAATTTGATTAT
CCCAGTAAACGTAGGTAGACAATAGCTCGAAATAATTTGTTGTGTAGCAA
TTCTGATCTTCCGAACGACAGACTTTACGCAACTTTAACGATGTCAAATT
TGTTTCCTCAACCTCCTACTGAATAGCGCCACCACTCATTTGAGAAGTTT
AGATTTATGTAAAGCCATCGTATACAATTGCACAAGAACCAAGTACACAC
ACACACACACATTGGCATATATATACGCCCAGCTTTCAACCCTGGATAAA
GAGAAATGAAGGGTTCTCCCTTAACTGACTCGCGTAATTACGGGTTGAAA
TGATATACAAACTGGTTCCTGTTGCCGCAAAAAAAAACAAACGATTTTTA
TCCACCCAACAGCGGAAGGAGCTGGCTCGAGGAAAGACGGGAGTCGCGAC
GGCGGCTGCGGCGGTGGCTGTCGCGGTGGCGGTTGCGGACGTTGGTGCCG
TGGTGGAACAAAGCTGCGGCTTAGCGCCGGGAGCGACGAGGGCATCGCGG
GTGCGTTGGGTTTTCAATGTCAAATGTCAGGGACCCTTTCAAGGGAAAGG
AAGCTGTATCAGTATTCGACAAATACCGATGAGTTGGATGCTCGGGTCTT
CGGCTTCCGTCATGGTGAAAGACATCACTCAGTTAAACGTCTGATGGAAT
AATTCAGACTTGCCAAGTTGGTTGACCTCCTTTCTTCAAAGTTGTAGTGT
TCGTCATTTGTATCCGCAATGTTCTCCGTGAAAGTAGGGACAGACAACGT
TTTGTCCTTATAAAGCATGCACACTCCTCAGTCTTCAATCCTGTCCGTTA
CCTGAGTCGTCCTACGATATGCCTCATTTAGAGAGGGCTAATGATCATTT
TTGGAGTATGACACATTAATATTTGTAAACTTGGAAATATCCGTGTGGTT
TCATGAACAACCTTATCGCTTGCACTCCCCAAAAACAAAAGTGGGACCCC
CTGTGACAAAAAGGGGGTAGGGGTCGCCATCCTTATGTTTTACATGTAGT
TGTTACATCATTGATCACGCATCCTGGGGAGGGCGGAGCTTTGTTCCTAT
CAGAGCAATTCCCGATGGCCAATCGCTCTTTCCTACGTTGCCAAATATAG
CCCAAAAATGTTTTATCTACCACAGTGGCTATTATGGCATGACACATTGA
CAAAAATATCATTCCGGGGTCCTTGAGGCTGTCATGCCACCAGACCCCGA
TTTCACTTACGCCAGGGCTGCCGCGCCTCTTCTTGCCATGAGTTCCGGAC
AAGCAAGTGTTAATATGTTTCTTACCCTATGTACCAACCCTCGCGTATTC
AGGCAAGAACACGGAGTATCCCTTTTGGTGGGACGAGACACCCTTTCAGT
CCCACCTTACGCACGTAGAACTACTGTATATGCCACACCGCGGATGGAGG
CCGATAAACGTCGATGAAGGTCACCGCGGATTTTGGGACCATAATACTTG
CCATGAGACCTTCGAAACCCCGTTCAAACAGATACATGACTGCAGAATCT
CCTTCATATCTTTGTGGAGTGTTCGTTTTTTCTTGAGTAGAACCGTGTCT
CCGTAAAATTTTCTAATTTTTCTAGTATGAACTGAAAAAAGGTTGAGTAT
ACAGAGGTTGAAGGTGCTTTGAAGGCCTTTGTACGAGAAAGTGATAACCT
CGTCGATCGAGGTGTGGTGTAATCAGCCTCGTGCTAATGTACATGCCAAG
CGCCACGCCTTTTGACCCTCACATGGTACACTCACCGTCCGTCAAAGAAG
CAACAACCTACATTCAAAGGAAGGCTCCCTCTCACGTCCGTTTCACACCA
AGCCCCCCATTCTTCTTATTTTTCCTGCTGCACCTCCCTCCCCCCCCCAC
ACCTTTGCCTTCCCCTACATAGGTCTACCGGGTGGCACACATACATTCCC
GCCGATTGCGAACCAAAGCCACTCGGCGGACAGAACAAATTTCTAGACCG
TGTGTCGGTTTTTCGAAGACACGTGCAAAAATCTGCACATAAATAACACT
TGCTCACAGCAGAAGACAGACGCAGACCATCCTTGCTTGCTTATTTTCGA
AACATTGATGTTGATCTATTTTGGTTTAGAACACCGAGTCTCGCACTGTT
ATAACATGCTCAACTATAGCAGAACAAAATATAATATAGTCGCAAAATGA
ATGATCACATCAGATCAGATCATTTATGTCGATCTTGTCACCATCCCAAA
ACCCATTTACCACCGCCGGCAGATCTAGATGCACTGGACAACCCTGCGTC
TGACAAGCACTATGGGGACAACCGGGCATTGCAATACGGCGTTAGCAGCG
CGGTGGCGGGGGCAGCGAACCATTTCTTCTCGGCCGACACC
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Coding sequence (CDS) from alignment at H-paniculata_contig4610:7684..11074+

>mRNA_H-paniculata_contig4610.11524.1 ID=mRNA_H-paniculata_contig4610.11524.1|Name=mRNA_H-paniculata_contig4610.11524.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1038bp|location=Sequence derived from alignment at H-paniculata_contig4610:7684..11074+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCAATATATCCAGCAATGCGAGGCTCAGTAGCTTCCGCAGCAATAGT
AATGATGGTTCTGGCGTTGATGTCCCCAGCCCAACCGTTTTCCCTGCGAC
CTTACAAGCGGATGCAACCGCCGCCAATGCCGACAGCTGCGCGGGCACGG
GCACGAGCGATTGCAAACTCTCTGTCGTCGGCACAGCCACCGGATTTTCC
CGGCGGCATATTCTCGTGCTATGAATCCTCGCCGTTGCGAGCCCGGAGGG
CGACTGCTACAGATGGCAATATATCCAGCAATGCGAGGCTCAGTAGCTTC
CGCAGCAATAGTAATGATGGTTCTGGCGTTGATGTCCCCAGCCCAACCGT
TTTCCCTGCGACCTTACAAGCGGATGCAACCGCCGCCAATGCCGACAGCT
GCGCGGGCACGGGCACGAGCGATTGCAAACTCTCTGTCGTCGGCACAGCC
ACCGGATTTTCCCGGCGGCATATTCTCGTGCTATGAATCCTCGCCGTTGC
GAGCCCGGAGGGCGACTGCTACAGCGGAAGGAGCTGGCTCGAGGAAAGAC
GGGAGTCGCGACGGCGGCTGCGGCGGTGGCTGTCGCGGTGGCGGTTGCGG
ACGTTGGTGCCGTGGTGGAACAAAGCTGCGGCTTAGCGCCGGGAGCGACG
AGGGCATCGCGGCGGAAGGAGCTGGCTCGAGGAAAGACGGGAGTCGCGAC
GGCGGCTGCGGCGGTGGCTGTCGCGGTGGCGGTTGCGGACGTTGGTGCCG
TGGTGGAACAAAGCTGCGGCTTAGCGCCGGGAGCGACGAGGGCATCGCGG
ATCTAGATGCACTGGACAACCCTGCGTCTGACAAGCACTATGGGGACAAC
CGGGCATTGCAATACGGCGTTAGCAGCGCGGTGGCGGGGGCAGCGAACCA
TTTCTTCTCGGCCGACACCATCTAGATGCACTGGACAACCCTGCGTCTGA
CAAGCACTATGGGGACAACCGGGCATTGCAATACGGCGTTAGCAGCGCGG
TGGCGGGGGCAGCGAACCATTTCTTCTCGGCCGACACC
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