mRNA_H-paniculata_contig46073.11519.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig46073.11519.1
Unique NamemRNA_H-paniculata_contig46073.11519.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig46073.11519.1 vs. uniprot
Match: A0A0J7K416_LASNI (Lectin receptor kinase n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K416_LASNI)

HSP 1 Score: 68.6 bits (166), Expect = 8.770e-12
Identity = 32/76 (42.11%), Postives = 45/76 (59.21%), Query Frame = 1
Query:   13 PVRFSDIKKLAHKNLWNEAVRVEFEGLENLKAWTYVDSMRKGSNVVSARGVFAWKFDEQGNVTKPKARLVARGFSQ 240
            PV + +  K      W EA+  E + +E    WT V ++ KG   +SA+ +F  K DE+GNV + KARLVARG+SQ
Sbjct:  174 PVSYEEAIKGPEGEKWKEAINEELDAMEKNSTWTVVKNLPKGRRPISAKWIFKKKLDEEGNVVRYKARLVARGYSQ 249          
BLAST of mRNA_H-paniculata_contig46073.11519.1 vs. uniprot
Match: A0A0J7KM48_LASNI (Integrase catalytic domain-containing protein n=2 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KM48_LASNI)

HSP 1 Score: 68.6 bits (166), Expect = 1.090e-11
Identity = 32/76 (42.11%), Postives = 45/76 (59.21%), Query Frame = 1
Query:   13 PVRFSDIKKLAHKNLWNEAVRVEFEGLENLKAWTYVDSMRKGSNVVSARGVFAWKFDEQGNVTKPKARLVARGFSQ 240
            PV + +  K      W EA+  E + +E    WT V ++ KG   +SA+ +F  K DE+GNV + KARLVARG+SQ
Sbjct:  549 PVSYEEAIKGPEGEKWKEAINEELDAMEKNSTWTVVKNLPKGRRPISAKWIFKKKLDEEGNVVRYKARLVARGYSQ 624          
BLAST of mRNA_H-paniculata_contig46073.11519.1 vs. uniprot
Match: A0A5C3EBA0_9BASI (Related to Retrotransposon protein n=1 Tax=Ustilago trichophora TaxID=86804 RepID=A0A5C3EBA0_9BASI)

HSP 1 Score: 62.0 bits (149), Expect = 2.230e-9
Identity = 32/80 (40.00%), Postives = 47/80 (58.75%), Query Frame = 1
Query:    1 TEEPPVRFSDIKKLAHKNLWNEAVRVEFEGLENLKAWTYVDSMRKGSNVVSARGVFAWKFDEQGNVTKPKARLVARGFSQ 240
            ++E P   +  +   +   W EA++VE + L+N   WT VD +      ++A+ VF  K D  GNV+K KARLVARGF+Q
Sbjct:  859 SQEDPQMLAQARASPNWPKWEEAIKVELDSLDNTGTWTIVD-LPAARKAITAKWVFKTKQDADGNVSKYKARLVARGFTQ 937          
BLAST of mRNA_H-paniculata_contig46073.11519.1 vs. uniprot
Match: A0A2S2NPY8_SCHGA (Copia protein (Fragment) n=1 Tax=Schizaphis graminum TaxID=13262 RepID=A0A2S2NPY8_SCHGA)

HSP 1 Score: 60.8 bits (146), Expect = 5.530e-9
Identity = 31/76 (40.79%), Postives = 44/76 (57.89%), Query Frame = 1
Query:   13 PVRFSDIKKLAHKNLWNEAVRVEFEGLENLKAWTYVDSMRKGSNVVSARGVFAWKFDEQGNVTKPKARLVARGFSQ 240
            P  + + +   +K  WN A++ E E L   K WT V   +   N++S + +F  K D +G +TK KARLVARGFSQ
Sbjct:   63 PTTYDEAQSHPNKKEWNLAMKSEIESLYKNKTWTLVKKPQN-RNIISTKWIFKIKKDGEGQITKYKARLVARGFSQ 137          
BLAST of mRNA_H-paniculata_contig46073.11519.1 vs. uniprot
Match: A0A182GGE6_AEDAL (Uncharacterized protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GGE6_AEDAL)

HSP 1 Score: 58.5 bits (140), Expect = 3.700e-8
Identity = 31/79 (39.24%), Postives = 46/79 (58.23%), Query Frame = 1
Query:    4 EEPPVRFSDIKKLAHKNLWNEAVRVEFEGLENLKAWTYVDSMRKGSNVVSARGVFAWKFDEQGNVTKPKARLVARGFSQ 240
            E+ P   SD++    +NLW +A++ E + LE    WT +  +  G + +S + +F  K  E G  T+ KARLVARGFSQ
Sbjct:  650 EDLPESLSDLQIRDDRNLWQQAMKEEMDSLERNGTWT-LTKLPAGRSAISCKWIFKIKPGEDGQPTRYKARLVARGFSQ 727          
BLAST of mRNA_H-paniculata_contig46073.11519.1 vs. uniprot
Match: A0A2G8SLM4_9APHY (Transcription factor n=1 Tax=Ganoderma sinense ZZ0214-1 TaxID=1077348 RepID=A0A2G8SLM4_9APHY)

HSP 1 Score: 57.0 bits (136), Expect = 1.290e-7
Identity = 31/76 (40.79%), Postives = 43/76 (56.58%), Query Frame = 1
Query:   13 PVRFSDIKKLAHKNLWNEAVRVEFEGLENLKAWTYVDSMRKGSNVVSARGVFAWKFDEQGNVTKPKARLVARGFSQ 240
            P   ++ K+      W EA++ E E L     W  V+    G+N+VS R VF  K D  GN+++ +ARLVARGFSQ
Sbjct:  998 PASLAEAKRRPEWPRWEEAMKEEMEALAKHGTWR-VERPPLGTNIVSCRWVFHAKKDASGNISRYRARLVARGFSQ 1072          
BLAST of mRNA_H-paniculata_contig46073.11519.1 vs. uniprot
Match: A0A2G8S3F3_9APHY (Transcription factor n=1 Tax=Ganoderma sinense ZZ0214-1 TaxID=1077348 RepID=A0A2G8S3F3_9APHY)

HSP 1 Score: 57.0 bits (136), Expect = 1.300e-7
Identity = 31/76 (40.79%), Postives = 43/76 (56.58%), Query Frame = 1
Query:   13 PVRFSDIKKLAHKNLWNEAVRVEFEGLENLKAWTYVDSMRKGSNVVSARGVFAWKFDEQGNVTKPKARLVARGFSQ 240
            P   ++ K+      W EA++ E E L     W  V+    G+N+VS R VF  K D  GN+++ +ARLVARGFSQ
Sbjct: 1014 PASLAEAKRRPEWPRWEEAMKEEMEALAKHGTWR-VERPPLGTNIVSCRWVFHAKKDASGNISRYRARLVARGFSQ 1088          
BLAST of mRNA_H-paniculata_contig46073.11519.1 vs. uniprot
Match: A0A2G8SUK6_9APHY (Transcription factor n=1 Tax=Ganoderma sinense ZZ0214-1 TaxID=1077348 RepID=A0A2G8SUK6_9APHY)

HSP 1 Score: 56.6 bits (135), Expect = 1.780e-7
Identity = 30/76 (39.47%), Postives = 43/76 (56.58%), Query Frame = 1
Query:   13 PVRFSDIKKLAHKNLWNEAVRVEFEGLENLKAWTYVDSMRKGSNVVSARGVFAWKFDEQGNVTKPKARLVARGFSQ 240
            P   ++ K+      W EA++ E E L     W  ++    G+N+VS R VF  K D  GN+++ +ARLVARGFSQ
Sbjct: 1001 PASLAEAKRRPEWPRWEEAMKEEMEALSKHGTWR-LEHPPPGTNIVSCRWVFHAKKDASGNISRYRARLVARGFSQ 1075          
BLAST of mRNA_H-paniculata_contig46073.11519.1 vs. uniprot
Match: A0A2P6P7L4_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6P7L4_ROSCH)

HSP 1 Score: 56.2 bits (134), Expect = 2.350e-7
Identity = 29/72 (40.28%), Postives = 43/72 (59.72%), Query Frame = 1
Query:   25 SDIKKLAHKNLWNEAVRVEFEGLENLKAWTYVDSMRKGSNVVSARGVFAWKFDEQGNVTKPKARLVARGFSQ 240
            S  KK     +W +A++ EF+ L N   W+ V   +   NVVS + +F  K +  G++++ KARLVARGFSQ
Sbjct:   29 SSYKKAMEIPVWKQAMQEEFDALTNQGTWSLVPP-QADKNVVSCKWIFKVKKNSDGSISRQKARLVARGFSQ 99          
BLAST of mRNA_H-paniculata_contig46073.11519.1 vs. uniprot
Match: UPI001E2759C6 (uncharacterized protein LOC123684598 n=1 Tax=Harmonia axyridis TaxID=115357 RepID=UPI001E2759C6)

HSP 1 Score: 55.8 bits (133), Expect = 3.260e-7
Identity = 30/77 (38.96%), Postives = 42/77 (54.55%), Query Frame = 1
Query:    4 EEPPVRFSDIKKLAHKNLWNEAVRVEFEGLENLKAWTYVDSMRKGSNVVSARGVFAWKFDEQGNVTKPKARLVARGF 234
            E+ PV + +     +K  W EAV    + LE    W  V+     + V+ ++ VF  K DE GN++K KARLVARGF
Sbjct:   12 EDDPVSYDEAMSSENKAKWTEAVESAIKALEENDTWI-VEKNPNNAEVIDSKWVFKGKKDEAGNISKFKARLVARGF 87          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig46073.11519.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0J7K416_LASNI8.770e-1242.11Lectin receptor kinase n=1 Tax=Lasius niger TaxID=... [more]
A0A0J7KM48_LASNI1.090e-1142.11Integrase catalytic domain-containing protein n=2 ... [more]
A0A5C3EBA0_9BASI2.230e-940.00Related to Retrotransposon protein n=1 Tax=Ustilag... [more]
A0A2S2NPY8_SCHGA5.530e-940.79Copia protein (Fragment) n=1 Tax=Schizaphis gramin... [more]
A0A182GGE6_AEDAL3.700e-839.24Uncharacterized protein n=1 Tax=Aedes albopictus T... [more]
A0A2G8SLM4_9APHY1.290e-740.79Transcription factor n=1 Tax=Ganoderma sinense ZZ0... [more]
A0A2G8S3F3_9APHY1.300e-740.79Transcription factor n=1 Tax=Ganoderma sinense ZZ0... [more]
A0A2G8SUK6_9APHY1.780e-739.47Transcription factor n=1 Tax=Ganoderma sinense ZZ0... [more]
A0A2P6P7L4_ROSCH2.350e-740.28Putative RNA-directed DNA polymerase n=1 Tax=Rosa ... [more]
UPI001E2759C63.260e-738.96uncharacterized protein LOC123684598 n=1 Tax=Harmo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig46073contigH-paniculata_contig46073:1266..1505 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score61.6
Seed ortholog evalue1.9e-07
Seed eggNOG ortholog5270.UM01393P0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Retrotransposon gag protein
EggNOG OGs38DPC@33154,3NUZ7@4751,3V2N5@5204,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelBasidiomycota
Best eggNOG OGNA|NA|NA
Exons1
Model size240
Cds size240
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930377.3187973-CDS-H-paniculata_contig46073:1265..15051622930377.3187973-CDS-H-paniculata_contig46073:1265..1505Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46073 1266..1505 +
1691481264.437835-CDS-H-paniculata_contig46073:1265..15051691481264.437835-CDS-H-paniculata_contig46073:1265..1505Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46073 1266..1505 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig46073.11519.1prot_H-paniculata_contig46073.11519.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig46073 1266..1505 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig46073.11519.1

>prot_H-paniculata_contig46073.11519.1 ID=prot_H-paniculata_contig46073.11519.1|Name=mRNA_H-paniculata_contig46073.11519.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=80bp
TEEPPVRFSDIKKLAHKNLWNEAVRVEFEGLENLKAWTYVDSMRKGSNVV
SARGVFAWKFDEQGNVTKPKARLVARGFSQ
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mRNA from alignment at H-paniculata_contig46073:1266..1505+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig46073.11519.1 ID=mRNA_H-paniculata_contig46073.11519.1|Name=mRNA_H-paniculata_contig46073.11519.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=240bp|location=Sequence derived from alignment at H-paniculata_contig46073:1266..1505+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACAGAGGAGCCCCCTGTTCGTTTTTCAGACATCAAGAAGCTGGCACATAA AAACTTGTGGAATGAGGCAGTCAGAGTAGAGTTTGAGGGCTTGGAAAATC TCAAAGCTTGGACTTATGTAGACAGTATGCGGAAAGGTTCCAATGTTGTC AGTGCGAGAGGGGTATTTGCATGGAAATTTGATGAGCAGGGGAACGTTAC AAAGCCAAAGGCAAGGCTTGTAGCTCGAGGGTTTAGCCAG
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Coding sequence (CDS) from alignment at H-paniculata_contig46073:1266..1505+

>mRNA_H-paniculata_contig46073.11519.1 ID=mRNA_H-paniculata_contig46073.11519.1|Name=mRNA_H-paniculata_contig46073.11519.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=480bp|location=Sequence derived from alignment at H-paniculata_contig46073:1266..1505+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACAGAGGAGCCCCCTGTTCGTTTTTCAGACATCAAGAAGCTGGCACATAA
AAACTTGTGGAATGAGGCAGTCAGAGTAGAGTTTGAGGGCTTGGAAAATC
TCAAAGCTTGGACTTATGTAGACAGTATGCGGAAAGGTTCCAATGTTGTC
AGTGCGAGAGGGGTATTTGCATGGAAATTTGATGAGCAGGGGAACGTTAC
AAAGCCAAAGGCAAGGCTTGTAGCTCGAGGGTTTAGCCAGACAGAGGAGC
CCCCTGTTCGTTTTTCAGACATCAAGAAGCTGGCACATAAAAACTTGTGG
AATGAGGCAGTCAGAGTAGAGTTTGAGGGCTTGGAAAATCTCAAAGCTTG
GACTTATGTAGACAGTATGCGGAAAGGTTCCAATGTTGTCAGTGCGAGAG
GGGTATTTGCATGGAAATTTGATGAGCAGGGGAACGTTACAAAGCCAAAG
GCAAGGCTTGTAGCTCGAGGGTTTAGCCAG
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