mRNA_H-paniculata_contig46009.11508.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig46009.11508.1
Unique NamemRNA_H-paniculata_contig46009.11508.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig46009.11508.1 vs. uniprot
Match: A0A293MM55_ORNER (Reverse transcriptase, gag, polyprotein (Fragment) n=1 Tax=Ornithodoros erraticus TaxID=265619 RepID=A0A293MM55_ORNER)

HSP 1 Score: 51.6 bits (122), Expect = 1.750e-5
Identity = 30/91 (32.97%), Postives = 50/91 (54.95%), Query Frame = 1 
Query:    4 EIWICDNGATKHMPHDKDFLFNYQECDGD-VRLADGKCLPTEGVGMLFLQFRFDSEVVLMKLT--QVALIPLLSDHLLSLGKFADFGHEYR 267
            + W  D+GA+ HM   +  L N++  D   + LADGK +PT+GVG +  + +  +      LT   V  +P ++D+LLS+ K  + G + R
Sbjct:  287 DSWSVDSGASSHMTGCRQILKNFRNDDEKTITLADGKTIPTQGVGTVVFEVKNGNGNGKNVLTAKDVLYVPGMADNLLSVSKLTENGMDVR 377
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig46009.11508.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A293MM55_ORNER1.750e-532.97Reverse transcriptase, gag, polyprotein (Fragment)... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig46009contigH-paniculata_contig46009:996..1277 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size282
Cds size282
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930375.9781177-CDS-H-paniculata_contig46009:995..12771622930375.9781177-CDS-H-paniculata_contig46009:995..1277Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46009 996..1277 +
1691481263.7726634-CDS-H-paniculata_contig46009:995..12771691481263.7726634-CDS-H-paniculata_contig46009:995..1277Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46009 996..1277 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig46009.11508.1prot_H-paniculata_contig46009.11508.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig46009 996..1277 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig46009.11508.1

>prot_H-paniculata_contig46009.11508.1 ID=prot_H-paniculata_contig46009.11508.1|Name=mRNA_H-paniculata_contig46009.11508.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=94bp
MEIWICDNGATKHMPHDKDFLFNYQECDGDVRLADGKCLPTEGVGMLFLQ
FRFDSEVVLMKLTQVALIPLLSDHLLSLGKFADFGHEYRCSREG
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mRNA from alignment at H-paniculata_contig46009:996..1277+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig46009.11508.1 ID=mRNA_H-paniculata_contig46009.11508.1|Name=mRNA_H-paniculata_contig46009.11508.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=282bp|location=Sequence derived from alignment at H-paniculata_contig46009:996..1277+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGATCTGGATATGTGATAATGGTGCAACGAAACACATGCCCCATGA
TAAAGATTTTCTCTTCAATTACCAGGAATGTGATGGGGATGTACGCCTTG
CAGATGGTAAATGTCTCCCGACCGAAGGAGTTGGCATGCTGTTCCTTCAA
TTTCGATTCGACTCCGAGGTTGTTTTGATGAAGTTAACTCAGGTTGCGCT
CATACCACTTCTCAGTGATCACCTTCTATCTCTCGGGAAATTCGCGGACT
TTGGTCATGAATATAGGTGTTCGCGCGAAGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig46009:996..1277+

>mRNA_H-paniculata_contig46009.11508.1 ID=mRNA_H-paniculata_contig46009.11508.1|Name=mRNA_H-paniculata_contig46009.11508.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=564bp|location=Sequence derived from alignment at H-paniculata_contig46009:996..1277+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGATCTGGATATGTGATAATGGTGCAACGAAACACATGCCCCATGA
TAAAGATTTTCTCTTCAATTACCAGGAATGTGATGGGGATGTACGCCTTG
CAGATGGTAAATGTCTCCCGACCGAAGGAGTTGGCATGCTGTTCCTTCAA
TTTCGATTCGACTCCGAGGTTGTTTTGATGAAGTTAACTCAGGTTGCGCT
CATACCACTTCTCAGTGATCACCTTCTATCTCTCGGGAAATTCGCGGACT
TTGGTCATGAATATAGGTGTTCGCGCGAAGGGATGGAGATCTGGATATGT
GATAATGGTGCAACGAAACACATGCCCCATGATAAAGATTTTCTCTTCAA
TTACCAGGAATGTGATGGGGATGTACGCCTTGCAGATGGTAAATGTCTCC
CGACCGAAGGAGTTGGCATGCTGTTCCTTCAATTTCGATTCGACTCCGAG
GTTGTTTTGATGAAGTTAACTCAGGTTGCGCTCATACCACTTCTCAGTGA
TCACCTTCTATCTCTCGGGAAATTCGCGGACTTTGGTCATGAATATAGGT
GTTCGCGCGAAGGG
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