prot_H-paniculata_contig46009.11508.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig46009.11508.1
Unique Nameprot_H-paniculata_contig46009.11508.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length94
Homology
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BLAST of mRNA_H-paniculata_contig46009.11508.1 vs. uniprot
Match: A0A293MM55_ORNER (Reverse transcriptase, gag, polyprotein (Fragment) n=1 Tax=Ornithodoros erraticus TaxID=265619 RepID=A0A293MM55_ORNER)

HSP 1 Score: 51.6 bits (122), Expect = 1.750e-5
Identity = 30/91 (32.97%), Postives = 50/91 (54.95%), Query Frame = 0 
Query:    2 EIWICDNGATKHMPHDKDFLFNYQECDGD-VRLADGKCLPTEGVGMLFLQFRFDSEVVLMKLT--QVALIPLLSDHLLSLGKFADFGHEYR 89
            + W  D+GA+ HM   +  L N++  D   + LADGK +PT+GVG +  + +  +      LT   V  +P ++D+LLS+ K  + G + R
Sbjct:  287 DSWSVDSGASSHMTGCRQILKNFRNDDEKTITLADGKTIPTQGVGTVVFEVKNGNGNGKNVLTAKDVLYVPGMADNLLSVSKLTENGMDVR 377
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig46009.11508.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A293MM55_ORNER1.750e-532.97Reverse transcriptase, gag, polyprotein (Fragment)... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig46009contigH-paniculata_contig46009:996..1277 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig46009.11508.1mRNA_H-paniculata_contig46009.11508.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig46009 996..1277 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig46009.11508.1 ID=prot_H-paniculata_contig46009.11508.1|Name=mRNA_H-paniculata_contig46009.11508.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=94bp
MEIWICDNGATKHMPHDKDFLFNYQECDGDVRLADGKCLPTEGVGMLFLQ
FRFDSEVVLMKLTQVALIPLLSDHLLSLGKFADFGHEYRCSREG
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