mRNA_H-paniculata_contig4591.11492.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4591.11492.1
Unique NamemRNA_H-paniculata_contig4591.11492.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig4591.11492.1 vs. uniprot
Match: A0A6H5K1J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1J1_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 2.440e-30
Identity = 67/144 (46.53%), Postives = 88/144 (61.11%), Query Frame = 1
Query:    1 LQYKYDGNTKEARRECPNKVHTTMMQSGDDPEDFLFVMDGYRDRLEEMEQPVPDERYEDIILRALPAEYERVRNASCEKRDFNLADIRRVVSTMYTDYLSRPNSANLVAGRGVAMQASGGSDGGRRNHITCFFCGKRGHLKRDC 432
            L+  +DG+TKEARR C  K+  T M+SG+DP DFL  MD  R RLE+M + +PDE YED++LRAL  EY  +R  S + R F L +IR  +  MY D LSR +S   VAGRGVAM A         +++ C  C + GH   +C
Sbjct:   67 LEDSFDGSTKEARRACRYKLFHTTMKSGEDPSDFLAKMDDLRLRLEDMGEKIPDESYEDVLLRALSKEYYFIRQTSHKDRTFGLTEIRTTMVNMYIDELSRKSSGPSVAGRGVAMSAES-------SNVQCRNCQEFGHYANEC 203          
BLAST of mRNA_H-paniculata_contig4591.11492.1 vs. uniprot
Match: A0A6H5JXA1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXA1_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 2.670e-10
Identity = 36/145 (24.83%), Postives = 73/145 (50.34%), Query Frame = 1
Query:    1 LQYKYDGNTKEARRECPNKVHTTMMQSGDDPEDFLFVMDGYRDRLEEMEQPVPDERYEDIILRALPAEYERVRNASCEKRDFNLADIRRVVSTMYTDYLSRPNSANLVAGRGVAMQASGGSDGGRRNHITCFFCGKRGHLKRDCT 435
            L+  Y+  T E  R   + +  T+M+ G++P+DF       R +LE+M + + D R++DI ++    +Y+ ++        F++  ++  +  ++ D   R  +   +AGRG AM         + +   CF C + GH++R+C+
Sbjct:  120 LKANYNRVTDEVIRAKLDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMAT-------KTSGPICFECNEPGHVRRNCS 257          
BLAST of mRNA_H-paniculata_contig4591.11492.1 vs. uniprot
Match: A0A6H5JUN9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUN9_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 2.950e-10
Identity = 37/144 (25.69%), Postives = 73/144 (50.69%), Query Frame = 1
Query:    1 LQYKYDGNTKEARRECPNKVHTTMMQSGDDPEDFLFVMDGYRDRLEEMEQPVPDERYEDIILRALPAEYERVRNASCEKRDFNLADIRRVVSTMYTDYLSRPNSANLVAGRGVAMQASGGSDGGRRNHITCFFCGKRGHLKRDC 432
            L+  Y+  T EA R   + +  T+M+ G++P+DF       R +LE+M + + D R++DI ++    +Y+ ++        F++  ++  +  ++ D   R  +   +AGRG AM         + +   CF C + GH++R+C
Sbjct:  139 LKANYNRLTDEAIRAELDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMAT-------KTSGPICFECNEPGHVRRNC 275          
BLAST of mRNA_H-paniculata_contig4591.11492.1 vs. uniprot
Match: A0A6H5KN28_9PHAE (Uncharacterized protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN28_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 7.010e-10
Identity = 36/144 (25.00%), Postives = 72/144 (50.00%), Query Frame = 1
Query:    1 LQYKYDGNTKEARRECPNKVHTTMMQSGDDPEDFLFVMDGYRDRLEEMEQPVPDERYEDIILRALPAEYERVRNASCEKRDFNLADIRRVVSTMYTDYLSRPNSANLVAGRGVAMQASGGSDGGRRNHITCFFCGKRGHLKRDC 432
            L+  Y+  T E  R   + +  T+M+ G++P+DF       R +LE+M + + D R++DI ++    +Y+ ++        F++  ++  +  ++ D   R  +   +AGRG AM         + +   CF C + GH++R+C
Sbjct:  120 LKANYNRVTDEVIRAKLDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMAT-------KTSGPICFECNEPGHVRRNC 256          
BLAST of mRNA_H-paniculata_contig4591.11492.1 vs. uniprot
Match: A0A6H5KJB9_9PHAE (Uncharacterized protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJB9_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 7.170e-10
Identity = 36/144 (25.00%), Postives = 72/144 (50.00%), Query Frame = 1
Query:    1 LQYKYDGNTKEARRECPNKVHTTMMQSGDDPEDFLFVMDGYRDRLEEMEQPVPDERYEDIILRALPAEYERVRNASCEKRDFNLADIRRVVSTMYTDYLSRPNSANLVAGRGVAMQASGGSDGGRRNHITCFFCGKRGHLKRDC 432
            L+  Y+  T E  R   + +  T+M+ G++P+DF       R +LE+M + + D R++DI ++    +Y+ ++        F++  ++  +  ++ D   R  +   +AGRG AM         + +   CF C + GH++R+C
Sbjct:  120 LKANYNRVTDEVIRAKLDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMAT-------KTSGPICFECNEPGHVRRNC 256          
BLAST of mRNA_H-paniculata_contig4591.11492.1 vs. uniprot
Match: A0A6H5K3T5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3T5_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 7.460e-10
Identity = 36/144 (25.00%), Postives = 72/144 (50.00%), Query Frame = 1
Query:    1 LQYKYDGNTKEARRECPNKVHTTMMQSGDDPEDFLFVMDGYRDRLEEMEQPVPDERYEDIILRALPAEYERVRNASCEKRDFNLADIRRVVSTMYTDYLSRPNSANLVAGRGVAMQASGGSDGGRRNHITCFFCGKRGHLKRDC 432
            L+  Y+  T E  R   + +  T+M+ G++P+DF       R +LE+M + + D R++DI ++    +Y+ ++        F++  ++  +  ++ D   R  +   +AGRG AM         + +   CF C + GH++R+C
Sbjct:  120 LKANYNRVTDEVIRAKLDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMAT-------KTSGPICFECNEPGHVRRNC 256          
BLAST of mRNA_H-paniculata_contig4591.11492.1 vs. uniprot
Match: A0A6H5L1Z9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1Z9_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 7.470e-10
Identity = 36/144 (25.00%), Postives = 72/144 (50.00%), Query Frame = 1
Query:    1 LQYKYDGNTKEARRECPNKVHTTMMQSGDDPEDFLFVMDGYRDRLEEMEQPVPDERYEDIILRALPAEYERVRNASCEKRDFNLADIRRVVSTMYTDYLSRPNSANLVAGRGVAMQASGGSDGGRRNHITCFFCGKRGHLKRDC 432
            L+  Y+  T E  R   + +  T+M+ G++P+DF       R +LE+M + + D R++DI ++    +Y+ ++        F++  ++  +  ++ D   R  +   +AGRG AM         + +   CF C + GH++R+C
Sbjct:  120 LKANYNRVTDEVIRAKLDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMAT-------KTSGPICFECNEPGHVRRNC 256          
BLAST of mRNA_H-paniculata_contig4591.11492.1 vs. uniprot
Match: A0A6H5JTQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTQ0_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 7.640e-10
Identity = 36/144 (25.00%), Postives = 72/144 (50.00%), Query Frame = 1
Query:    1 LQYKYDGNTKEARRECPNKVHTTMMQSGDDPEDFLFVMDGYRDRLEEMEQPVPDERYEDIILRALPAEYERVRNASCEKRDFNLADIRRVVSTMYTDYLSRPNSANLVAGRGVAMQASGGSDGGRRNHITCFFCGKRGHLKRDC 432
            L+  Y+  T E  R   + +  T+M+ G++P+DF       R +LE+M + + D R++DI ++    +Y+ ++        F++  ++  +  ++ D   R  +   +AGRG AM         + +   CF C + GH++R+C
Sbjct:  120 LKANYNRVTDEVIRAKLDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMAT-------KTSGPICFECNEPGHVRRNC 256          
BLAST of mRNA_H-paniculata_contig4591.11492.1 vs. uniprot
Match: A0A6H5KHG5_9PHAE (Uncharacterized protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG5_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 7.650e-10
Identity = 36/144 (25.00%), Postives = 72/144 (50.00%), Query Frame = 1
Query:    1 LQYKYDGNTKEARRECPNKVHTTMMQSGDDPEDFLFVMDGYRDRLEEMEQPVPDERYEDIILRALPAEYERVRNASCEKRDFNLADIRRVVSTMYTDYLSRPNSANLVAGRGVAMQASGGSDGGRRNHITCFFCGKRGHLKRDC 432
            L+  Y+  T E  R   + +  T+M+ G++P+DF       R +LE+M + + D R++DI ++    +Y+ ++        F++  ++  +  ++ D   R  +   +AGRG AM         + +   CF C + GH++R+C
Sbjct:  120 LKANYNRVTDEVIRAKLDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMAT-------KTSGPICFECNEPGHVRRNC 256          
BLAST of mRNA_H-paniculata_contig4591.11492.1 vs. uniprot
Match: A0A6H5KMR7_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMR7_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 1.130e-9
Identity = 36/144 (25.00%), Postives = 71/144 (49.31%), Query Frame = 1
Query:    1 LQYKYDGNTKEARRECPNKVHTTMMQSGDDPEDFLFVMDGYRDRLEEMEQPVPDERYEDIILRALPAEYERVRNASCEKRDFNLADIRRVVSTMYTDYLSRPNSANLVAGRGVAMQASGGSDGGRRNHITCFFCGKRGHLKRDC 432
            L+  Y+  T E      N +  T+M+ G++P+DF       R +LE+M + + D R++DI ++    +Y+ ++        F++  ++  +  ++ D   R  +   +AGRG AM         + +   CF C + GH++R+C
Sbjct:  120 LKANYNRVTDEVISAKLNDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKFIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMAT-------KTSGPICFECNEPGHVRRNC 256          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4591.11492.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A6H5K1J1_9PHAE2.440e-3046.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXA1_9PHAE2.670e-1024.83CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JUN9_9PHAE2.950e-1025.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KN28_9PHAE7.010e-1025.00Uncharacterized protein (Fragment) n=3 Tax=Ectocar... [more]
A0A6H5KJB9_9PHAE7.170e-1025.00Uncharacterized protein (Fragment) n=2 Tax=Ectocar... [more]
A0A6H5K3T5_9PHAE7.460e-1025.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L1Z9_9PHAE7.470e-1025.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTQ0_9PHAE7.640e-1025.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHG5_9PHAE7.650e-1025.00Uncharacterized protein n=11 Tax=Ectocarpus sp. CC... [more]
A0A6H5KMR7_9PHAE1.130e-925.00CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4591contigH-paniculata_contig4591:5632..6069 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size438
Cds size438
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930373.4599898-CDS-H-paniculata_contig4591:5631..60691622930373.4599898-CDS-H-paniculata_contig4591:5631..6069Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4591 5632..6069 +
1691481262.9674416-CDS-H-paniculata_contig4591:5631..60691691481262.9674416-CDS-H-paniculata_contig4591:5631..6069Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4591 5632..6069 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4591.11492.1prot_H-paniculata_contig4591.11492.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4591 5632..6069 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4591.11492.1

>prot_H-paniculata_contig4591.11492.1 ID=prot_H-paniculata_contig4591.11492.1|Name=mRNA_H-paniculata_contig4591.11492.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=146bp
LQYKYDGNTKEARRECPNKVHTTMMQSGDDPEDFLFVMDGYRDRLEEMEQ
PVPDERYEDIILRALPAEYERVRNASCEKRDFNLADIRRVVSTMYTDYLS
RPNSANLVAGRGVAMQASGGSDGGRRNHITCFFCGKRGHLKRDCTA
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mRNA from alignment at H-paniculata_contig4591:5632..6069+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4591.11492.1 ID=mRNA_H-paniculata_contig4591.11492.1|Name=mRNA_H-paniculata_contig4591.11492.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=438bp|location=Sequence derived from alignment at H-paniculata_contig4591:5632..6069+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGCAATACAAGTATGACGGCAACACCAAGGAAGCACGGAGGGAGTGCCC CAACAAAGTCCACACAACAATGATGCAGTCCGGAGATGATCCGGAAGATT TCCTCTTCGTCATGGATGGTTATCGCGACCGTTTGGAGGAAATGGAGCAA CCCGTACCTGACGAACGCTACGAGGACATTATTCTCCGAGCCCTCCCCGC TGAGTACGAAAGGGTTCGTAATGCCAGTTGCGAGAAACGTGACTTCAATT TGGCGGACATTCGACGCGTGGTTAGCACCATGTACACCGACTACCTCTCC CGCCCGAATAGCGCAAACCTGGTCGCAGGCCGCGGAGTCGCCATGCAGGC AAGTGGGGGAAGTGATGGCGGCAGAAGGAACCACATAACATGTTTCTTTT GCGGGAAGCGAGGCCACCTGAAAAGAGACTGCACCGCT
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Coding sequence (CDS) from alignment at H-paniculata_contig4591:5632..6069+

>mRNA_H-paniculata_contig4591.11492.1 ID=mRNA_H-paniculata_contig4591.11492.1|Name=mRNA_H-paniculata_contig4591.11492.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=876bp|location=Sequence derived from alignment at H-paniculata_contig4591:5632..6069+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGCAATACAAGTATGACGGCAACACCAAGGAAGCACGGAGGGAGTGCCC
CAACAAAGTCCACACAACAATGATGCAGTCCGGAGATGATCCGGAAGATT
TCCTCTTCGTCATGGATGGTTATCGCGACCGTTTGGAGGAAATGGAGCAA
CCCGTACCTGACGAACGCTACGAGGACATTATTCTCCGAGCCCTCCCCGC
TGAGTACGAAAGGGTTCGTAATGCCAGTTGCGAGAAACGTGACTTCAATT
TGGCGGACATTCGACGCGTGGTTAGCACCATGTACACCGACTACCTCTCC
CGCCCGAATAGCGCAAACCTGGTCGCAGGCCGCGGAGTCGCCATGCAGGC
AAGTGGGGGAAGTGATGGCGGCAGAAGGAACCACATAACATGTTTCTTTT
GCGGGAAGCGAGGCCACCTGAAAAGAGACTGCACCGCTCTGCAATACAAG
TATGACGGCAACACCAAGGAAGCACGGAGGGAGTGCCCCAACAAAGTCCA
CACAACAATGATGCAGTCCGGAGATGATCCGGAAGATTTCCTCTTCGTCA
TGGATGGTTATCGCGACCGTTTGGAGGAAATGGAGCAACCCGTACCTGAC
GAACGCTACGAGGACATTATTCTCCGAGCCCTCCCCGCTGAGTACGAAAG
GGTTCGTAATGCCAGTTGCGAGAAACGTGACTTCAATTTGGCGGACATTC
GACGCGTGGTTAGCACCATGTACACCGACTACCTCTCCCGCCCGAATAGC
GCAAACCTGGTCGCAGGCCGCGGAGTCGCCATGCAGGCAAGTGGGGGAAG
TGATGGCGGCAGAAGGAACCACATAACATGTTTCTTTTGCGGGAAGCGAG
GCCACCTGAAAAGAGACTGCACCGCT
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