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Homology
BLAST of mRNA_H-paniculata_contig4584.11479.1 vs. uniprot
Match: D7G0A0_ECTSI (Vacuolar protein sorting-associated protein 54 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0A0_ECTSI) HSP 1 Score: 105 bits (262), Expect = 1.080e-21 Identity = 64/106 (60.38%), Postives = 76/106 (71.70%), Query Frame = 3
Query: 525 YEDVREELELSGHNLTSVLNNPRETFMDSLYEAAFETEQH-PPLEAVVLPAPP-TREVTIQDVEPFIQRTASLSRVFERNHRRPVGLGLGGQVEEPAA-GSVAANG 833
++DVREELELSGHNLTSVLNNPRETFMDSLYEAAFE E P LE V P RE+T QDVEP++++TA+L++ +ERNH + LG Q P A G ANG
Sbjct: 4 FQDVREELELSGHNLTSVLNNPRETFMDSLYEAAFEAEPPLPDLEVVRANVPHGIREITPQDVEPYLRKTAALTKAYERNHL----VALGQQDAPPGARGGGGANG 105
BLAST of mRNA_H-paniculata_contig4584.11479.1 vs. uniprot
Match: A0A6H5KYH6_9PHAE (Vps54_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYH6_9PHAE) HSP 1 Score: 77.8 bits (190), Expect = 2.320e-12 Identity = 51/91 (56.04%), Postives = 60/91 (65.93%), Query Frame = 3
Query: 447 GAGTGGGGADLVPVN---DLDDPGIANHNYEDVREELELSGHNLTSVLNNPRETFMDSLYEAAFETEQH-PPLEAVVLPAPP-TREVTIQD 704
GA GG G + + D+ +A +++DVREELELSGHNLTSVLNNPRETFMDSLYEAAFE E P LE V P RE+T Q+
Sbjct: 104 GAAAGGSGTANISASAEGSGDERELAMLHFQDVREELELSGHNLTSVLNNPRETFMDSLYEAAFEAEPPLPDLEVVRANVPHGIREITPQE 194
BLAST of mRNA_H-paniculata_contig4584.11479.1 vs. uniprot
Match: A0A835YJU9_9STRA (Vacuolar protein sorting-associated protein 54 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJU9_9STRA) HSP 1 Score: 71.6 bits (174), Expect = 2.970e-10 Identity = 52/117 (44.44%), Postives = 66/117 (56.41%), Query Frame = 3
Query: 498 DDPGIANHNYEDVREELELSGHNLTSVLNNPRETFMDSLYEAAFETEQHPPLEAVVLPAPPTR--EVTIQDVEPFIQRTASLSRVFERNHRRP-VGLGLGGQVEEPAAGSVAANGVA 839
D G + N+ DVREEL+ GHNLTSVLNNPRE+ D LYEA + EQ +E V P EV + +V F++RT SLSR F +H++ GLG P +G NG A
Sbjct: 59 DGDGESVENFTDVREELDRIGHNLTSVLNNPRESVFDMLYEA-LDPEQAYAMETHVEGTPSALHPEVDLSEVVTFLKRTGSLSRGFVNSHQKQRTRPGLGTLSVRPHSGLHRTNGSA 174
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 105.5 |
| Seed ortholog evalue | 4.1e-20 |
| Seed eggNOG ortholog | 2880.D7G0A0 |
| Preferred name | VPS54 |
| KEGG ko | ko:K10357,ko:K17600 |
| Hectar predicted targeting category | other localisation |
| GOs | GO:0000003,GO:0000138,GO:0000139,GO:0000149,GO:0000938,GO:0001675,GO:0001894,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005794,GO:0005795,GO:0005802,GO:0006810,GO:0006886,GO:0006892,GO:0006896,GO:0006996,GO:0006997,GO:0007010,GO:0007034,GO:0007041,GO:0007049,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007289,GO:0007290,GO:0007291,GO:0007349,GO:0008104,GO:0008150,GO:0009272,GO:0009507,GO:0009536,GO:0009653,GO:0009987,GO:0010256,GO:0010927,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016482,GO:0019725,GO:0019905,GO:0019953,GO:0022402,GO:0022412,GO:0022413,GO:0022414,GO:0022607,GO:0030154,GO:0030435,GO:0030437,GO:0030476,GO:0031090,GO:0031410,GO:0031505,GO:0031974,GO:0031981,GO:0031982,GO:0031984,GO:0031985,GO:0032456,GO:0032501,GO:0032502,GO:0032504,GO:0032505,GO:0032588,GO:0032989,GO:0032991,GO:0033036,GO:0033363,GO:0034293,GO:0034613,GO:0040008,GO:0042147,GO:0042244,GO:0042546,GO:0042592,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043934,GO:0043935,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044431,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045103,GO:0045104,GO:0045184,GO:0045229,GO:0046907,GO:0048193,GO:0048232,GO:0048468,GO:0048471,GO:0048515,GO:0048609,GO:0048646,GO:0048856,GO:0048869,GO:0048871,GO:0048872,GO:0048873,GO:0048878,GO:0050789,GO:0050879,GO:0050881,GO:0051179,GO:0051234,GO:0051321,GO:0051641,GO:0051649,GO:0051704,GO:0055082,GO:0055088,GO:0060052,GO:0060249,GO:0065007,GO:0065008,GO:0070013,GO:0070590,GO:0070591,GO:0070726,GO:0070727,GO:0070925,GO:0071554,GO:0071555,GO:0071702,GO:0071705,GO:0071840,GO:0071852,GO:0071940,GO:0090156,GO:0097708,GO:0098588,GO:0098791,GO:0099023,GO:1903046 |
| EggNOG free text desc. | Vacuolar protein sorting-associated protein |
| EggNOG OGs | KOG2115@1,KOG2115@2759 |
| COG Functional cat. | L |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko01009,ko03019,ko03029,ko04131,ko04812 |
| Exons | 2 |
| Model size | 877 |
| Cds size | 861 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4584.11479.1 >prot_H-paniculata_contig4584.11479.1 ID=prot_H-paniculata_contig4584.11479.1|Name=mRNA_H-paniculata_contig4584.11479.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=287bp
MEQPKSHAGDPGEGGSHGGPVGKDVGTGGGGSANGAQSFHEKKTRVVPAV VKREIGAIPTSTAATNNHIRTNSNSSSSSINRTSSRRTMSWRRHAQQAQG SNRTDSRRRSSSSTGMDDEVGSSGGGGGGRRRRGSTLEFEARVIGAGTGG GGADLVPVNDLDDPGIANHNYEDVREELELSGHNLTSVLNNPRETFMDSL YEAAFETEQHPPLEAVVLPAPPTREVTIQDVEPFIQRTASLSRVFERNHR RPVGLGLGGQVEEPAAGSVAANGVARSSEKAAGEGAP back to topmRNA from alignment at H-paniculata_contig4584:2491..6991- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig4584.11479.1 ID=mRNA_H-paniculata_contig4584.11479.1|Name=mRNA_H-paniculata_contig4584.11479.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4501bp|location=Sequence derived from alignment at H-paniculata_contig4584:2491..6991- (Halopteris paniculata Hal_grac_a_UBK monoicous) TTGGGGAATAGCCGATGGAACAACCGAAGTCCCATGCGGGAGACCCAGGA
GAGGGAGGATCGCACGGCGGCCCCGTCGGCAAAGATGTAGGTACTGGCGG
TGGTGGAAGTGCCAATGGTGCTCAAAGTTTCCATGAAAAAAAGACGAGAG
TTGTCCCAGCAGTAGTCAAGAGAGAGATTGGAGCCATCCCTACATCCACC
GCAGCTACTAATAATCATATCAGAACCAACAGCAACAGCAGCAGCAGCAG
CATTAACAGGACCAGTAGCAGACGCACAATGTCCTGGCGCAGGCACGCAC
AGCAGGCACAAGGATCAAACAGGACGGATTCTCGTCGAAGGTCATCTTCT
TCAACGGGTATGGACGATGAGGTTGGCAGCAGCGGCGGCGGTGGGGGTGG
CCGGCGCAGGCGAGGGTCTACTCTGGAATTTGAGGCACGCGTAATCGGAG
CTGGAACAGGCGGCGGTGGTGCCGATTTGGTCCCTGTTAATGATCTTGAC
GATCCAGGAATTGCCAACCATAACTATGAGGACGTGCGGGAAGAGCTGGA
GCTCAGCGGTCACAACCTGACGTCTGTGCTCAATAACCCTCGCGAAACGT
TCATGGACTCCCTGTACGAGGCTGCGTTCGAAACGGAGCAGCACCCTCCT
CTGGAAGCGGTTGTCCTTCCAGCGCCCCCTACGAGGGAGGTCACGATTCA
GGTACGTATATTTAGATTGATTTTTGAAGATATTCAGAATGTAATCAGCA
TGTACAAGAGATTGCGCTGTAGAGCACAGACATTACAGTAAAGTATCCAA
GAGCAGGTCAACAGAGGAAAAATAAACAATGTGTGCATATACGTGTGCTC
TATTCGTTGTATACTGGGTTGTGTGAGCGATTTCAGTGAGGACTTCACTG
CCTGTAGATAGGCAGGGCAGGAAGCTACTGTTGTGGTCGTTCTACCGTTG
TGTGTACTGCGCCGTGGCGTGTTGTATGCATACACGAACTGTTTTGTTGT
ACTGCACTTTGCCAGACTGCACCTGACTGGACTGGATTGTACCTCTCTAT
ACGTTTGTATTTCGCAATCTGTTGGTAGGACTGAACCAGTATTTCGTTTT
TCTGTGCGGGGCGTTTGTTTTCAACGAGCAGCATCATACAGCGATTTCAC
CGGATCTTTATCTTCGTTTCGTGTTTTTCCTACTGGGTTGGCATATCACT
TCCGGTATTTTCTTGATGACAGTGAATTGCCAACATCAGGGTCTGCACGT
GGTGGGGTTAAGCAATGATAATAACACAAAAACAGAAATAATGGAAAATG
ACCCGCGGGTTGTCCTGTCTGTCCGTGTCATCCTTTCCTATTTTCTGCGG
AGAGATGAATGGGGGCTGGACGTGTTCTGTACATGAAGGTTACTTCATAA
ATTTGCATGAGCAGCGGAAGATATCGCATCTGTCTGTTATATAAATACCT
TACATGTACGGCCTCGTGGTCATGGCTGAACGCTCTTCTAACTTGACGAC
TACTGGCTGTACATAGTACAGACAGTTGCATAGATTCTACAAAGCATTGC
TCCCCTGGTAAATTTAGGAAGAGAGAGATTCCTAAGCGACGCCTTGTGAG
CAAATAAATGCTCAGGAACAGCCCGCTGTGTCAGTGCCATGCCCTTACAT
ACTATTTGCGAGTCCAGTAGGCCAATGAAGGGAGGCGAAATTTACCCCAG
TTCGTCCTCAAATTTCTATTGTTTTTGGGGGGTTTTCGTTTTCAAGTTTG
CGCGAATAGGGCCAAGCTGACCTAACCCATCGCAACCCTATATCTAACCC
TAATCCTCACGCCCTCGCGGTGTCAGTTGGAGCCCGGTAGCGCCTAAAAT
CGGCCAAACGCTGCGGTTCTGCGCGGTGTACAGTGAGCAGGTATGAAATT
TGGCGGCGGGACTGTCAGCTGCACCACAGCAAGTACCGCTTAACCGTGGA
AAATTGAGGACGGAATAGGATAAACTACTCAACGGAGTGAAAGAGAAAAG
GAGTACGCGTGCTATTCGAGACTGATTCATGAGAAACACTGATAGCATTA
TTGTGCGGTTGAGCTGCTGTGTGTAATAATATTAACAGTGGGCTTCAGTG
CTGTGGTCAGGTCAATTTTAATCAGCACTTGCAAAAAACAAATAAACGAG
TTCTCAGTGTTGATTTTTGCCTGATGGAATCCTTTGATGAAGAGGTGTTA
CTGCGACAGGTGTTACTGCGACTGAAACATGCATACTACGCAGCGTTTTA
GAATTTGGGGTGCAGGGTACATGTGCTCGGCGTGACGTGAAAATTATCAC
TGTTCATCATCCTCATTATCCAGTACAGTAAGTTGGTGGTCGTCGTTGTC
GTTTCGGAACAGCTTTTCAATAGGAGTACTGGAGTCATCCCCGAGCAAAC
AAATCTTCGTGCAAGCGTAGGTTCGAGAACAAGCAAGAACTAACTGCACG
GGTGTAGCCTCGTCGTCGTTTTATCATAGTAAAATGCGCTAATGTCATTC
TGTTCTTAGAAGTGCCGTCCTCTAGCTCTTTAGTCCCCCCTCCCGACTTG
AAGCAAGCTTGCCTATTTATGACGTGAGACGGGGACAGACAGATAGCCAA
TCCAGTATAGTCTGTGTATATATCTTGTCTGTGCACGTCACTTATTTTTT
TCTTTTTCTTCGTTACGTTGTTGTCCGAAAGAGCTTCAAAGATTCAACTT
TTGTTAGCAAACGACCTGCTTCAACGTCGTCGTCATCGTCGCCCCCCCCC
AAGAGGCTTTTTTAAGATGCCCAAAGGGTCATGACGGTAAAAAAAGTGGG
CTATGTTATATGAAACGTTAACCGAAAGGCGTGATCATTTGATTTTTGAT
AGACTTGCTGTTATCTATACACGCTGCCAATCAATCCGCCAAACAACACA
CGGACTAGACCCAGGTGAAGACATATATTCTCGGTGAGTGAAAAACCTAG
TGAAGTGGCTGGTAGACCATACTTGCAGGTTATATTCATGCGGAAATATG
ATCATTTTAGATGTTAACTTAGTGGTTTAATAATATTTTTATAACAGGGT
AAATCGTCTAGAGCCTGTTTTATTCGTGATGAGGGGTAATACCTGAATGA
TCCGCGTGCGGCCTGTTGTATTATTTCTGTTAGTTCGTTTCTCCTGAAGG
AATAGACAGGCAATGAAACAACTTGGCAGACAAAACTACCGGGGGATTAC
AGGCAGCACGGATCACTTCATGGCTTCTCGCTTGCGTGTATGGATAGAAG
TTGGCTACGCAGAAAAACGTCGGTTTGAACGTACTAATGACAGCTACGAA
AAGAAGCTGCATTATTACTATCTCAAGAATGTCAAGATTTCTTGACCCAC
CGCGCCTGACGCCTGTTGTATCTCTTGTGGGAGTCGCTGTTCCTGAAATA
ATCAGCAGCCAGCAACACGTACATGACTGCCTGAGAGTTAGACAGGCTGA
GGGAGCCAGCGCATCGCAACCTCCTGGATGCAAAACGAAATAACCTGAAC
ACAAACACCGCCTTTTACCACCAGGCTTTGTTAGACTGCTCGAAGAATGG
AATATATATATATATATATTCCATTTTTAATTTATTTCCAGGATAAATCC
ATCGACAGTAAAATAATACTCGGAATCTTCTGGAAGTAACACCGCGAATA
TGATGAATGATGAATGCTAGGTTTTTATGGCGACAAATATTGTGTACTGT
GAGGATGTCAACTATTTCCGGCAAAATATGGTGTATTTGAAAAGTACACC
GAGCATGTCCAGCAAAATATTTTGTGCTGTGAGAATATTCCGTATTTCCA
GGAAATATATTCTGTACCGGGAGAATTTTCCCAAGTCTTGATATTTACAG
GGAAAGTGCGGTTATATTTCCTCGGTATACTGTATACGGTAAGGCGCGAT
ACTGAGTTAAGTATAGATTTTTTGTTTGTGTCCACCTGCGCATTCGTATC
TTAAATAGTTGCACGGTACAAAATGTGATGGTCATGATTATGGTGTATTA
TGCCCTGCCATGCAAAATACAACCGCAAATGGTTGATTTTCCAAAGGCAG
CACTCCCTTGGGTGTAGGTCCTCCTCCTCTGCTGATGTGTATTGGTTCAA
AGGTCATTTGGATATTTGGTGCCTATATATAGATGAAAAAAGTTGCCCGT
AGGTTTTCAAGCACGAGTCTCATAACCTCAAAATTATAATGATGAGTATT
AGGGTACACACACACACACACACATACGTAGGGAAAAATTGATATTTTTC
AAGCGAAACTCTCATCTCCGTTCTACAACTGATAACCACCCATGCTCATT
CTTCACTCCCGCGTGTGACCGCCGTAGGATGTGGAGCCGTTCATACAGCG
CACCGCCTCGCTAAGCCGTGTGTTCGAGCGCAACCACCGACGGCCGGTGG
GTCTAGGGCTCGGGGGACAGGTGGAGGAGCCGGCAGCAGGGAGCGTGGCG
GCAAACGGCGTAGCGAGGAGCAGCGAGAAGGCGGCCGGGGAGGGCGCTCC
A back to topCoding sequence (CDS) from alignment at H-paniculata_contig4584:2491..6991- >mRNA_H-paniculata_contig4584.11479.1 ID=mRNA_H-paniculata_contig4584.11479.1|Name=mRNA_H-paniculata_contig4584.11479.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1722bp|location=Sequence derived from alignment at H-paniculata_contig4584:2491..6991- (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGGAACAACCGAAGTCCCATGCGGGAGACCCAGGAGAGGGAGGATCGCA CGGCGGCCCCGTCGGCAAAGATGTAGGTACTGGCGGTGGTGGAAGTGCCA ATGGTGCTCAAAGTTTCCATGAAAAAAAGACGAGAGTTGTCCCAGCAGTA GTCAAGAGAGAGATTGGAGCCATCCCTACATCCACCGCAGCTACTAATAA TCATATCAGAACCAACAGCAACAGCAGCAGCAGCAGCATTAACAGGACCA GTAGCAGACGCACAATGTCCTGGCGCAGGCACGCACAGCAGGCACAAGGA TCAAACAGGACGGATTCTCGTCGAAGGTCATCTTCTTCAACGGGTATGGA CGATGAGGTTGGCAGCAGCGGCGGCGGTGGGGGTGGCCGGCGCAGGCGAG GGTCTACTCTGGAATTTGAGGCACGCGTAATCGGAGCTGGAACAGGCGGC GGTGGTGCCGATTTGGTCCCTGTTAATGATCTTGACGATCCAGGAATTGC CAACCATAACTATGAGGACGTGCGGGAAGAGCTGGAGCTCAGCGGTCACA ACCTGACGTCTGTGCTCAATAACCCTCGCGAAACGTTCATGGACTCCCTG TACGAGGCTGCGTTCGAAACGGAGCAGCACCCTCCTCTGGAAGCGGTTGT CCTTCCAGCGCCCCCTACGAGGGAGGTCACGATTCAGATGGAACAACCGA AGTCCCATGCGGGAGACCCAGGAGAGGGAGGATCGCACGGCGGCCCCGTC GGCAAAGATGTAGGTACTGGCGGTGGTGGAAGTGCCAATGGTGCTCAAAG TTTCCATGAAAAAAAGACGAGAGTTGTCCCAGCAGTAGTCAAGAGAGAGA TTGGAGCCATCCCTACATCCACCGCAGCTACTAATAATCATATCAGAACC AACAGCAACAGCAGCAGCAGCAGCATTAACAGGACCAGTAGCAGACGCAC AATGTCCTGGCGCAGGCACGCACAGCAGGCACAAGGATCAAACAGGACGG ATTCTCGTCGAAGGTCATCTTCTTCAACGGGTATGGACGATGAGGTTGGC AGCAGCGGCGGCGGTGGGGGTGGCCGGCGCAGGCGAGGGTCTACTCTGGA ATTTGAGGCACGCGTAATCGGAGCTGGAACAGGCGGCGGTGGTGCCGATT TGGTCCCTGTTAATGATCTTGACGATCCAGGAATTGCCAACCATAACTAT GAGGACGTGCGGGAAGAGCTGGAGCTCAGCGGTCACAACCTGACGTCTGT GCTCAATAACCCTCGCGAAACGTTCATGGACTCCCTGTACGAGGCTGCGT TCGAAACGGAGCAGCACCCTCCTCTGGAAGCGGTTGTCCTTCCAGCGCCC CCTACGAGGGAGGTCACGATTCAGGATGTGGAGCCGTTCATACAGCGCAC CGCCTCGCTAAGCCGTGTGTTCGAGCGCAACCACCGACGGCCGGTGGGTC TAGGGCTCGGGGGACAGGTGGAGGAGCCGGCAGCAGGGAGCGTGGCGGCA AACGGCGTAGCGAGGAGCAGCGAGAAGGCGGCCGGGGAGGGCGCTCCAGA TGTGGAGCCGTTCATACAGCGCACCGCCTCGCTAAGCCGTGTGTTCGAGC GCAACCACCGACGGCCGGTGGGTCTAGGGCTCGGGGGACAGGTGGAGGAG CCGGCAGCAGGGAGCGTGGCGGCAAACGGCGTAGCGAGGAGCAGCGAGAA GGCGGCCGGGGAGGGCGCTCCA back to top
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