prot_H-paniculata_contig4584.11479.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig4584.11479.1
Unique Nameprot_H-paniculata_contig4584.11479.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length287
Homology
BLAST of mRNA_H-paniculata_contig4584.11479.1 vs. uniprot
Match: D7G0A0_ECTSI (Vacuolar protein sorting-associated protein 54 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0A0_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 9.830e-22
Identity = 64/106 (60.38%), Postives = 76/106 (71.70%), Query Frame = 0
Query:  171 YEDVREELELSGHNLTSVLNNPRETFMDSLYEAAFETEQH-PPLEAVVLPAPP-TREVTIQDVEPFIQRTASLSRVFERNHRRPVGLGLGGQVEEPAA-GSVAANG 273
            ++DVREELELSGHNLTSVLNNPRETFMDSLYEAAFE E   P LE V    P   RE+T QDVEP++++TA+L++ +ERNH     + LG Q   P A G   ANG
Sbjct:    4 FQDVREELELSGHNLTSVLNNPRETFMDSLYEAAFEAEPPLPDLEVVRANVPHGIREITPQDVEPYLRKTAALTKAYERNHL----VALGQQDAPPGARGGGGANG 105          
BLAST of mRNA_H-paniculata_contig4584.11479.1 vs. uniprot
Match: A0A6H5KYH6_9PHAE (Vps54_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYH6_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 2.170e-12
Identity = 51/91 (56.04%), Postives = 60/91 (65.93%), Query Frame = 0
Query:  145 GAGTGGGGADLVPVN---DLDDPGIANHNYEDVREELELSGHNLTSVLNNPRETFMDSLYEAAFETEQH-PPLEAVVLPAPP-TREVTIQD 230
            GA  GG G   +  +     D+  +A  +++DVREELELSGHNLTSVLNNPRETFMDSLYEAAFE E   P LE V    P   RE+T Q+
Sbjct:  104 GAAAGGSGTANISASAEGSGDERELAMLHFQDVREELELSGHNLTSVLNNPRETFMDSLYEAAFEAEPPLPDLEVVRANVPHGIREITPQE 194          
BLAST of mRNA_H-paniculata_contig4584.11479.1 vs. uniprot
Match: A0A835YJU9_9STRA (Vacuolar protein sorting-associated protein 54 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJU9_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 2.780e-10
Identity = 52/117 (44.44%), Postives = 66/117 (56.41%), Query Frame = 0
Query:  162 DDPGIANHNYEDVREELELSGHNLTSVLNNPRETFMDSLYEAAFETEQHPPLEAVVLPAPPTR--EVTIQDVEPFIQRTASLSRVFERNHRRP-VGLGLGGQVEEPAAGSVAANGVA 275
            D  G +  N+ DVREEL+  GHNLTSVLNNPRE+  D LYEA  + EQ   +E  V   P     EV + +V  F++RT SLSR F  +H++     GLG     P +G    NG A
Sbjct:   59 DGDGESVENFTDVREELDRIGHNLTSVLNNPRESVFDMLYEA-LDPEQAYAMETHVEGTPSALHPEVDLSEVVTFLKRTGSLSRGFVNSHQKQRTRPGLGTLSVRPHSGLHRTNGSA 174          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4584.11479.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G0A0_ECTSI9.830e-2260.38Vacuolar protein sorting-associated protein 54 n=1... [more]
A0A6H5KYH6_9PHAE2.170e-1256.04Vps54_N domain-containing protein n=1 Tax=Ectocarp... [more]
A0A835YJU9_9STRA2.780e-1044.44Vacuolar protein sorting-associated protein 54 (Fr... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4584contigH-paniculata_contig4584:2491..6977 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4584.11479.1mRNA_H-paniculata_contig4584.11479.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig4584 2491..6991 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig4584.11479.1 ID=prot_H-paniculata_contig4584.11479.1|Name=mRNA_H-paniculata_contig4584.11479.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=287bp
MEQPKSHAGDPGEGGSHGGPVGKDVGTGGGGSANGAQSFHEKKTRVVPAV
VKREIGAIPTSTAATNNHIRTNSNSSSSSINRTSSRRTMSWRRHAQQAQG
SNRTDSRRRSSSSTGMDDEVGSSGGGGGGRRRRGSTLEFEARVIGAGTGG
GGADLVPVNDLDDPGIANHNYEDVREELELSGHNLTSVLNNPRETFMDSL
YEAAFETEQHPPLEAVVLPAPPTREVTIQDVEPFIQRTASLSRVFERNHR
RPVGLGLGGQVEEPAAGSVAANGVARSSEKAAGEGAP
back to top