mRNA_H-paniculata_contig4581.11476.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4581.11476.1
Unique NamemRNA_H-paniculata_contig4581.11476.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig4581.11476.1 vs. uniprot
Match: D7G9H3_ECTSI (Clathrin light chain n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G9H3_ECTSI)

HSP 1 Score: 135 bits (339), Expect = 2.120e-33
Identity = 113/198 (57.07%), Postives = 129/198 (65.15%), Query Frame = 3 
Query:  348 MDGTDDFFTGG---PVEQQGGVGVGVGVPVDGAASAEGGGAPEGSFQDLGGXXXXXXXXXXXXXXXXXXAYEQQQPNGD-GQSNG--FDPGVGGFAQ---GYASLDNDAMGGGVGXXXXXXXXNLPDMGMPAPEDVEPSALDDFMERWQATLAEKASIEAEAKSAALDAAKADLETHGLERAAKKEAKMGRNREEEQV 914
            MDG DDFFTG    P +QQGG                        + DLG            XXXXXXX ++QQ PNG+  Q+NG  FD G+G F Q   GYA+LD D  GG     XXXXXX +PDMGMPAPEDVEPSALD+FMERWQA L EKA IEAEAK+AAL+AAKADLETH +ERAA KEAKMG+NRE+EQ+
Sbjct:    1 MDGGDDFFTGAEDAPEQQQGG------------------------YNDLGSGEYGATGGDYGXXXXXXXXFDQQ-PNGEVAQANGTGFDNGMG-FQQDNMGYATLD-DPSGGSX---XXXXXXXMPDMGMPAPEDVEPSALDEFMERWQAGLVEKARIEAEAKAAALEAAKADLETHSVERAANKEAKMGQNREQEQI 168
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4581.11476.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G9H3_ECTSI2.120e-3357.07Clathrin light chain n=2 Tax=Ectocarpus TaxID=2879... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4581contigH-paniculata_contig4581:2594..12079 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score137.5
Seed ortholog evalue8.5e-30
Seed eggNOG ortholog2880.D7G9H3
Preferred nameCLC
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Clathrin light chain
EggNOG OGs2CBIT@1,2S8RD@2759
Ec32 ortholog descriptionClathrin light chain
Ec32 orthologEc-28_000910.1
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size1356
Cds size744
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4581.11476.1prot_H-paniculata_contig4581.11476.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4581 2859..11732 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930371.2762647-UTR-H-paniculata_contig4581:2593..28581622930371.2762647-UTR-H-paniculata_contig4581:2593..2858Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4581 2594..2858 -
1691481261.8097024-UTR-H-paniculata_contig4581:2593..28581691481261.8097024-UTR-H-paniculata_contig4581:2593..2858Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4581 2594..2858 -
1622930371.3662207-UTR-H-paniculata_contig4581:11732..120791622930371.3662207-UTR-H-paniculata_contig4581:11732..12079Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4581 11733..12079 -
1691481261.8626125-UTR-H-paniculata_contig4581:11732..120791691481261.8626125-UTR-H-paniculata_contig4581:11732..12079Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4581 11733..12079 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930371.2925866-CDS-H-paniculata_contig4581:2858..32041622930371.2925866-CDS-H-paniculata_contig4581:2858..3204Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4581 2859..3204 -
1691481261.8238533-CDS-H-paniculata_contig4581:2858..32041691481261.8238533-CDS-H-paniculata_contig4581:2858..3204Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4581 2859..3204 -
1622930371.3079185-CDS-H-paniculata_contig4581:4477..46021622930371.3079185-CDS-H-paniculata_contig4581:4477..4602Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4581 4478..4602 -
1691481261.8335073-CDS-H-paniculata_contig4581:4477..46021691481261.8335073-CDS-H-paniculata_contig4581:4477..4602Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4581 4478..4602 -
1622930371.3249323-CDS-H-paniculata_contig4581:6858..70111622930371.3249323-CDS-H-paniculata_contig4581:6858..7011Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4581 6859..7011 -
1691481261.8433652-CDS-H-paniculata_contig4581:6858..70111691481261.8433652-CDS-H-paniculata_contig4581:6858..7011Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4581 6859..7011 -
1622930371.3524654-CDS-H-paniculata_contig4581:11612..117321622930371.3524654-CDS-H-paniculata_contig4581:11612..11732Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4581 11613..11732 -
1691481261.8530514-CDS-H-paniculata_contig4581:11612..117321691481261.8530514-CDS-H-paniculata_contig4581:11612..11732Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4581 11613..11732 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4581.11476.1

>prot_H-paniculata_contig4581.11476.1 ID=prot_H-paniculata_contig4581.11476.1|Name=mRNA_H-paniculata_contig4581.11476.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=248bp
MDGTDDFFTGGPVEQQGGVGVGVGVPVDGAASAEGGGAPEGSFQDLGGGD
YGGNADYGNGDFNAGGAYEQQQPNGDGQSNGFDPGVGGFAQGYASLDNDA
MGGGVGNGMGDGMGNLPDMGMPAPEDVEPSALDDFMERWQATLAEKASIE
AEAKSAALDAAKADLETHGLERAAKKEAKMGRNREEEQVGTYQTLLFYCS
TDQDRTTCAIAMGRYTVVQLAKMDQMKAQIANVLIIVCERTDLNRST*
back to top

mRNA from alignment at H-paniculata_contig4581:2594..12079-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4581.11476.1 ID=mRNA_H-paniculata_contig4581.11476.1|Name=mRNA_H-paniculata_contig4581.11476.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=9486bp|location=Sequence derived from alignment at H-paniculata_contig4581:2594..12079- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACGCTACCAAATTACAATAGTCCCGAGCTGATTTTATCTATGGCACTTT
TCACCGACGCGGACAAATGAATAGAATATAATGACAAATGTTAAATAAAA
GCGAAATATAATCATGGCCATAGAACCCGCGAATTTAGGTTGCTGGATGT
CAATACACCTCCTGCTTTGTGCGAAAGCCTCCAGTACCGAACCTTGTCAA
ACCGTGAATCATACCTATAGCCTTTGCGTGAAGGCAGCAAACGAGTCTTT
GGGCTAACCTCGTAGGAGAAGATCGACACAGAGAAGTGCATTGGTAATAG
CTACACTCACGTCGTTGTGGGTGTATACAACAACAAACAAATTGACGATG
GACGGTACAGATGACTTCTTCACAGGAGGACCGGTAGAGCAGCAGGGGGG
TGTTGGCGTTGGTGTGGGCGTGCCCGTCGACGGAGCAGCTTCGGCAGAGG
GGGGAGGGGCGCCCGAGGTGTGTGGTCCTATTTCTGGATTGTCTGTGTTC
GGGCAGTGTGGTTGAGATTGGTGATTTGATGCCACTCTGCGGCCTTGTTT
GCTGTCTGTCTGTACTACAGTTGTCTGTCGTGCTATCAGATCAATTTCCT
AGCGAAGCTGTCTGTCTACAGTCAGTCAGTCGATGGTCAGCCTGGAGATA
ACCCGCCTTCTGTTTCCATGCATCTTAGGTGGTGATGCGACAGTCGAACA
TATGGCTGGCTAACATACCTAGTGGATAGGATGGGAGTTCCTTTGAAGCC
TACATATCATGAAGCATGTCCTGGTTCAATTGGGGATGATAGGTTTTAAC
AAAATCGCCGTGTTGATGGTGCTTGCTTGCCCTTGCCCAATTGACACGAG
CTGGCACCATATCTATGCTAAAGTAGGTGAGGGATTGCTGTTCCTTCCTT
CTCTGATGTCGCGTTCTTACACAGAAATGGAACAACGGGACTGGCCAATT
TTGGTCAAGGTCTCCACAGCATGAACTCTCACCTTGATCTAGAGCTGTTG
GCCTCCTGAACGAGAGGGAACACTGCCTCTGATGCACGATTGTAGTGACA
GAGAGCTCCGGCCTCGCAGACAGACAGTACATGCAGTACTGCCACGATAT
AATACATACTCTGGGTTGTTTGCACAACAACGGACTGCAGCCCTCGCAAT
TTTTTCGTCAGATGATATTTTGCTCCGAAAATCCTCGTCCCGCGCCCGAA
CGGTTGATACCGCCCCTTGTACGCAATTACGATATATTATATTCACTACT
GTATTGACTGTCTGTACATGGCTGTAACGAGATGTCACCCCTGTTAGCGC
ACGTCCCTACCCACTGACTCCCCCGCTTGCAAACATAGAAAAAAAGAGAT
GAAGGTTTTGTTCCGACCCAACGTCCCATAACATGACAAGGATATAGGGG
ATAGGAGCTGTCATTCCTCAGACAGGCCTCCATTATTTAGTAGGTAGATA
GTAGAAACAACCCTGACAGGCGTTGACTTGGTTCGTCTACGGCCCACGAT
TACAGCGCTTAATAGTAACGTGAAATACAATCCAACACGATGACTGACTG
TTGAGTGGTGTGTTGACAAAAACTCAGACGTGATAGGAGGGCATAGAAAC
AAGCATGTACCCCCCCACACAGTCATGCTCATGCGTGAGGACTGTGTTTG
CAGCAGATGACTCATTCCCATGGCCCATGCAGCTAGCCTATTGATTGCTC
TTGTCCTGAGAAATTCGCGCGTTCGAACGTATCGTCCACCCTTCTTGACC
TTCTTGAGCAACGGTGGGGCAGTTAGGAAGCAGAGTGGACAAGGCAAGTC
AACCGATGCAGAGATGGATAGAAGTGTTCTCATTGGTCAAAACCGGTGTC
AGGGCTGATATTTTTTTACCGTACTCCAGCACTACCCTCTCCTCCTTCCA
GCCTTGATAAATGACCCTCCCCAATCTTTCTCGATGAAAAAATCAGCTGC
CTTCTCATTCGGAAATAGCACACGGCGCTAAACTGCTCAGCATGCGAAGG
TGATGTAGAACTACATACGGCAAGATCCAGGGGTGGTACTCGCGGGTGAA
CGTGGTATACTTGGCACGATCAATAATAATCACATGTCATAGGTGCAAAA
AAATATATACAGTTGTCACCAGACGTCGTCACGAGAGGATAAATTGTTGT
GTTCCAGGAATCGATGGGTCTATCACTATTCGATACGTTCGCAGCTTCGG
CTTGCCTTGTTCTGTTGACAAGTGGACACGAAAAATTCCGTCTCGATTAC
TTAGCAACAGATATTGAAAGCTTGTCCAAATACTAATTGCGTTCGCAGCG
GTAACTATACAGTCAGTAGTTCCATCCTGTTGTATGCACAAAGAAGCAGA
GCGATTTTTGTCTTTCCCTTGCTCGGGTGTTCTTGTGTGATGTTTTTTTT
CTCAGACACTTTGTCCAATTACTCAGACCTACGGTCAGACGGTAGAAAAA
AATCCCATGTCCTGTCTTGTGTTGTCTTGTGTTGTCTTTTTTTTTGAGTT
CTTCTCTCATCAAGAGCCAAGGCCGTAGCTCAGGGGGCGGGACCCTTCTC
CGAAACCTATTGCTGTTTTTTTAGCTGGAGAGGGCACACCACAGTCTCTA
ACTGCGGAACGTGCCTGTTGCGGAAAAAGGACTGGTGTGTGGTGTGTTGT
GATCTCTGTGTAGAACAGTGTTCCCACGCGGAACTTTTGTCGTCTGATTG
CGAGTCTGCGTGATTCGTCTCAAGTGACAGGTTACGCGTCTGTCCCACGT
CTGCGAGCCTTCCATCACATTCCTCCAATCGTTCCAGAACCCGTATAGGG
TCAGTGCACGTTTTCTGTTTTTTCCCTAAGAGTGGGATCTTATTGTCATG
GGCACACGAAAAGTCGCAATCAAAACATGTCAACCCTTCGCCCACGAAGA
GTGGCCACTTGATAAAATGTAAACATGTTCTGTTGGCAGCCCTGTATATG
GTAATGGTACATGTGTTGGAACTGCGTGAGGCAGTGATTGGTCAGTCAAC
AGATTTTTTAATCCTAAAATTGAGGTATTTTGGACTTACTCTGCTGAAAT
CAGATTTTTTTTTTTTGATATTTTGGACGCTCGCGGTGAACGGGTTCGTT
CTTCTCTTGTTGTTTTTTTGGATGATGACGTGCGAAATGTACGCGGCAGG
GGATACGACCTGTGTGTTCGTTTGTGCGTGTATCTTGTATGGGGAGGATG
GATAGGTGTCGGGCTGCAGTGTATTTATTTGAGCGGTGATGTAAAGGAGT
TCAGTAGGGTTGACTTGGCCAGTAGTGCCTACCCGCTTCATACCATCGTA
TAACCTTTGCTATGACACCAGGTGCAAAGTAAAACCATATTCATGCGTGG
CAAATCGCACGTTACGATAATGAAGGGGGGGGGGGGTGTACTCACGTAAA
TGCATACCGTCGTGTTCCGGCCATTGACTTTGCATCCCTACAATGCTAGA
AGGGAGGCATACCGAGTTTTGGCCAATCATGTTCCGTTCACGGTGGTGGT
ATCAGCCAATAGTCGTCATCCTTGCGTTGGTGCGCCAATCGGATTTTATC
CTGAGGTGATGGGCATCCCTGTCAACCAAATGTTTCACCCTCGGGACAAA
TATGAACACAAGACACGAATAAATACGAGAAATACGGCATGAATACTGTA
TCTGTCTGAGTTGGGGAAGATGTCCACATGACATGTATTCGATATATCGT
GGAGCATCGAAAAGCTCGAGTATGGAAGCATCGGTAAAGGTTTTTGCCTC
AGTCTTCCGGGGGTTGGAAAAAAAAGAAATCGAAAAGCTCGGGCAGATTG
AGTATTCAATGTGTGCGGTACCATCCGAAAAATAGACAGGACCTGTTCAC
TGGGTATATGGACCATCTGGTGATCATCTGTAGTGACCTTTTATAGAGTT
GTAAACGAATAAGCACGGGTTTACACAAGACAAACGATGATAATTCGAGA
TAGTTGCGAATGCTCTATTCGTATTTGTCTGGAGGGTGTACTGTTTTCAC
ATTCGGCAAGCGTAGCTATTGCACCGGACCTTGATTATCGCGCATACTTA
TGTACAAAGTCGCGCTGCACATAGCGAACACATCGATTCGTGCGTGATAC
ATCGAGAGCATGGCCACCAGCAAAAGTATTTTTCCTCGACGTTAGGGTGC
TACAATCAGCAGCGGGTTCAGTAGACATCCTGTACGATGTGTCTGCGACC
AAGGTAAAAATAGCCCATGGAATATGCCGCATGAACTCCCCCACATCTTG
AGGAAACAGCATGGGGCGGGGGTGCAGTCATGTTTCACATGCCGTAGGTG
CTAGAGCATTTATCACGGATCCTCGGAAGGGCAACATAATAAAAACCTGT
CTGTGTCTAAAATGCAAGGTGCGATGTCAGACCGAGGTGTGATAAGAAGA
TGTTATATACAGTAGAGTGGACCAGAATACTTCATCCTCCAGACCAATAC
GAATGCTTCAAGGTTTAGCATGGGTACCTTTTGTTCCATAGGTACCCCCC
CCCCCTCCCCCCCCTGGATAATCCAAATACCACTGCTCCCCGAGTAATAG
TGCACGAATGAACAGAATAGATCAACGCTAGGTTGTACGTGTTCGCATAC
TCATCACCTTCAGGCAAATATTCTTTTTGTTTTGGCGAGTATTTTCATCC
AACTATTCGTTCGTATTCGTCTGGAGAGTCGAGGGGAGAAAAAGAAGAAA
GAAAAAAGTGACAAAGCGAAGAAAAGCAAAGGGTGGTCTACTATTTGATT
TCAGCATTTACAAATACACGCAAACAGTACAATGTCCAAGTTAACCCTTG
AGAGGCTCACGCCTTGATTAGGTTTTTCCTTGGATATGCTTTTGGGGCAT
GTTTTTTCAATGCAATATGAGGTTATGTCTTGGAAAATGGCAGTAGAGGC
GTACTGGTTGCTTGATTCGAGCAGGTGATACTGACACGTGAAAACATAAA
TCCGCGTCCCGAAGGGGCTAAGATCGGATGAATCAGGAATGGTAGTTACC
CCTTGAAAGGTATTGTTATGATCTAGGTTGCTTGTGCTGTTTTTTTTTTT
TGTGTGGTCATCGACTAGGGTTCCTTCCAGGACCTGGGAGGAGGTGACTA
CGGAGGAAACGCCGACTACGGTAACGGAGATTTCAATGCCGGCGGTGCGT
ACGAGCAACAACAGCCCAACGGAGATGGGCAGTCCAACGGATTTGACCCC
GGAGTGGGAGGGTTCGCACAGGTAGGGGAAAAACACAAGTAGACGTTGGG
TTTCCAGCGTGTCATATAATGGCGGATATTGACGATATATCTTAATAACG
ACCAAACTTCTCGGTGTCACTTGAGGAAAAATGAATTGGAAAGAGCGAAA
TATTCGAATATATATTCACATATAGCCGTTGAAATGTGAAAATGTTTCAG
GGGAAATATGTATGTACATAAGACATATATATATATATATATATATATAT
ATATATATTTACACGTGGGTGCCTGGGTTATTTTGATTGGACGATTGAAC
CCATAAATCACCAGCATGGTTGTCGGACTTCGCATTTGACTTATTTCTTC
AAAATAAGCAACTAGTTGTCGTGTAGTGCTTGCAAGTTTCACATGGTAGG
CACTCGGTTGTTTTCAACGAAGGTACGTGTGCCCCCCACTCGATGATTAC
TATAAGCTGAGGCATTCGTGGTGAAATTTGAGAAACTTATCGCCTCAAGG
TTCAGCATGTATAATACACGACCGCTCTGAACAATAGTACAGAGCACTAG
ACAGGGAATATCCAGTTCATTTCGATGTGTCATCATCCATCCCGCACAAT
CTTAAACCTCATCTATACCGTTATAATCGCACCTTGAAAGCTTCTCAGTT
AGCGAGCCTTGGGACTGCTGTTGGTCGTTAACACGTTTCCCTTCGATTCC
CGGAAGCTGATGAGTTTCCTGGGGCGTGGACATGGCGATTCCAGGTTGCG
CTGGGATATGACCATGTTTGACATGAGATCGATTCACAATGGTTTAGTGT
ATTTTGGTGATGAGCCATTCGTTAGACTATTTATCCGCTTGGGGATTCGA
GTGGAGGCATGTTTTTCTTGGGGGTTAGGGCTAGGGTCAATTTTTTCTTT
TCTTTTCGTGGCGATTTCTTTTTTTTGCAACTGCAGTAAAAGCGGGAGGT
AGACTTCGATATCACCGCCCGCATGCGAATGCTTGTTCAAACGCGAGCGG
TTTTCTCGAGAAGTACACTGCAGCTGACAATGCCAAGTGTGCCTGCCGTT
GGGGAGATGGTGAGGAAGATAGATGTGTCGGGTAGATGGGTCATTTCGAC
CACGTCATGTGTCCGTCCTCGAGATTGTCGATCGCGCTTTGGAAACGTTT
GTACCCGGTAGTGTGATACCTGCAGGGTTTACGGTACCCGTATTCTTCTG
GGGAGGAAAATAGTTGATGACTTGAAAGAGCACCGAGAAATAAATTACTT
GAGCTAATTTCGGTTTGCCCACAGTCGGTAGCTCCTCGTGCCGGCCCCTA
GGTTCAACTACACCAGCGTCTCGTTATAACACGAATTCCTCAACACAAGG
GGTGACTACTGGTATCTAGTGGTATTTCACAATGTGGGATTGGTGTAGTG
GAGCTGGGGATTTGGACGAGGTGTGCGACGAGCAGCTCACTTTAAGCCAT
ATACGACCAAGCCTATATAAAATAGGCAAATGGAGTTCGTTTTTGCGGAA
ATACTGTACTTATAACCCTACTATCGAATCGTCTAAGGCGTAAAATGGTG
AAAAATTGGTGATTTTTTTTTTTTTTTTTCTGAAATCTCACAGAAACTGG
ACTTGGCAGCCGGTTTCACTTTTGTCTCTTGTTTGATGTTTTTCTACGCC
AAGAAAATATAACAGGTCTGGCGCATGTGACTCTGTAGACGTGAGAGGTA
AATGCGCTTGGAATTTTTCGTTATACATGACTGAAAATTGCTCATGAGTG
CATGTTAAACGTAGCCATCGTTACATGTATCTACAGCACAACCTCAGCAG
TGTATTTTGAATCAATCGGCCCAATTTTCCCCCGTTCCATTGCCTCTCCC
CGATAACCCAAGGCGCCCGTGTCAGACCAACGCCAATCAAGCGCAGTAGA
GTACACCGTGTTTATAACATCACGACAGCTCCCCAGTTGCTTTTCCTAAT
TTAATAGATGGAGCTTTTTTATTGTTGAAATAATCTACATGCTGTCATGA
CAGTCACGATTCAGAATGACGTCACGCCCTGAGGGCCCACAACGTGCGCC
CAAGACTCACAAGCATGTTTTGCGGGCAAATGGTGTCAACGGCACCGATT
TGAGATCTGTCAACGCATACTAGTCCTACGGGGTTGACGTTAAGATCAGG
GCTAGAGTCACAGTGAGTCCTGGTGTTTATTCTGGTAGCGTTGGTACACG
ATAAAACGTGGACCGTTGAAGTAAGAACTGTCGGTCTTCGCATTGACAAT
TCGCCCGAACTGCACGTGTTCGTGCAGGGATACGCGTCATTGGACAATGA
CGCTATGGGCGGCGGGGTCGGCAATGGCATGGGCGACGGTATGGGTAACT
TGCCGGACATGGGGATGCCGGCGCCGGAAGATGTTGAGCCAAGCGCGCTT
GAGTGAGTTGGACAAAACTAAGATGCTTATAGGAATTATAGCGTCAATGA
TACTACTGCCGTTGACCCTGCACAACGGGTAGTGTTTTTTTGGGGGGGGG
GGTTAACCCCCGGAAGGCTAAGGCAAAAACCTTTATCCGATGCTTCCATA
CTTCAGTATACAACGAGTAGGTATGGTGGTGGTGACCTCGCAACAAGGCG
GTCGAAATATATTATCACAACTCCAGCACATGATGTTGTGCCAGTTTTCA
GGAATCTATCCCTCAATAGTATGGTTACCGCATTATTGTGTCCGCAACTG
ACCCCATCAAGCTCGTAAAAGCAGTGATGATCTAGCCCTTGACTGGTACC
CAACCTAGCCGATTAATTCGCGGTAGGGTTCGTTCTGTCTTGTTCTAGCT
GGCTTGTGGTTCTCTCTGTCTGATTCAAGCCGGTAGGTGGTCCGTTTCGT
CATATATATATATTTTTGTAATATGTGTATCCTGTCCGCGGTCGGTTCTG
TCATTTCTTATTGCTATAACCGGTTCGGGGGTTGTTTCACCTCTGGTTTT
CAAGCCCGTAGACGGTTGGTTTGGATCTTCTTTTTTGTTTTTACGGCCGG
TCCGTGGCCTTGACTGTCTAATTGAAGGCGATTGAAGTTCGGTTTTTATC
AGGCGTTATTGGTGAAAAAGACTAAAGGCAAAGCCTTGCCTTGTTAATAT
ATATATATATATATATATGTATTCTGTTTCTGAAATTTAATATTAATAAA
ATAATGACCCCAAAATCTGGTGGGATCCATCCCACTATGTGTATTATCCG
TCCTTGTTGTCTCCCTATGATGTACTAAACTAGCGAGTCCAATATAATAC
TGAATCATGAAGAAATAACCTTGACATTTTAGTCAATACACCCTGTATAA
TTCTTTTGGATTTCCCACGAGATCAGTAGGGTAAAATCTTTCCCCCTTCT
CCCAAGCATTCGCCTGAGTTCCAGATTGATCCGGAAAAATAGCATACGGT
ACCCACCGCTGTTTATTCGATGTACGAGTATTATTAGCAGCCGTGAATGG
TCCGGAGCACGTAGAATACACGACCTCATTCTGAAATTCAGATGAATGTA
TTTTTTTATATTTGTGGCGAATACGCCAATTATTCGTATTTGTCAGGGGG
GGGGGTAAAACCTTCTCTAAAGATTTTATGCTGGTATAGTAGCTTCCAGT
CTTCTCGTACGCTAGTAATACAGCTTTAACATTTCAAACATACGCCTTTC
CGCACTCTCTTTGGTCATGATCCAGTGATTTCATGGAGAGGTGGCAGGCT
ACTTTGGCGGAGAAAGCTTCGATAGAGGCAGAGGCGAAGTCGGCAGCTCT
AGACGCTGCCAAGGCTGATCTGGAGACGCACGGACTGGAGAGGGCCGCGA
AGAAGGAGGCTAAGATGGGTCGGAACAGGGAAGAAGAACAGGTCGGAACA
TATCAAACATTATTATTTTATTGTTCAACAGATCAGGACAGAACGACATG
TGCCATTGCCATGGGTCGCTACACTGTTGTCCAGCTGGCTAAGATGGACC
AGATGAAGGCACAGATCGCAAATGTGTTAATTATAGTATGTGAGAGAACA
GATCTGAACAGATCAACATGAGTTCGTGTGCTAGGTCGCTGTGTTTTCGT
CCAGTAGGCTAAGGTGGACCTCATCAAGGAACATGAACAGGGAGATATCA
AACCACTATGGAAGATAAGAAACCTTGGTATTTTCTATCGTAGGACGCAG
GTTTATTTCCCAGGGCTGTAGTAGTGGGGGATGTAGCCATGGTTGAAAAT
ATAACGTATGCTATCCCACTATATGCTTCTGCACTGCAAATGAGTCTTCC
ACCCCCCCCCCCTCCCGGATAAATATGAACACTTGC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig4581:2594..12079-

>mRNA_H-paniculata_contig4581.11476.1 ID=mRNA_H-paniculata_contig4581.11476.1|Name=mRNA_H-paniculata_contig4581.11476.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1488bp|location=Sequence derived from alignment at H-paniculata_contig4581:2594..12079- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACGGTACAGATGACTTCTTCACAGGAGGACCGGTAGAGCAGCAGGG
GGGTGTTGGCGTTGGTGTGGGCGTGCCCGTCGACGGAGCAGCTTCGGCAG
AGGGGGGAGGGGCGCCCGAGATGGACGGTACAGATGACTTCTTCACAGGA
GGACCGGTAGAGCAGCAGGGGGGTGTTGGCGTTGGTGTGGGCGTGCCCGT
CGACGGAGCAGCTTCGGCAGAGGGGGGAGGGGCGCCCGAGGGTTCCTTCC
AGGACCTGGGAGGAGGTGACTACGGAGGAAACGCCGACTACGGTAACGGA
GATTTCAATGCCGGCGGTGCGTACGAGCAACAACAGCCCAACGGAGATGG
GCAGTCCAACGGATTTGACCCCGGAGTGGGAGGGTTCGCACAGGGTTCCT
TCCAGGACCTGGGAGGAGGTGACTACGGAGGAAACGCCGACTACGGTAAC
GGAGATTTCAATGCCGGCGGTGCGTACGAGCAACAACAGCCCAACGGAGA
TGGGCAGTCCAACGGATTTGACCCCGGAGTGGGAGGGTTCGCACAGGGAT
ACGCGTCATTGGACAATGACGCTATGGGCGGCGGGGTCGGCAATGGCATG
GGCGACGGTATGGGTAACTTGCCGGACATGGGGATGCCGGCGCCGGAAGA
TGTTGAGCCAAGCGCGCTTGAGGATACGCGTCATTGGACAATGACGCTAT
GGGCGGCGGGGTCGGCAATGGCATGGGCGACGGTATGGGTAACTTGCCGG
ACATGGGGATGCCGGCGCCGGAAGATGTTGAGCCAAGCGCGCTTGATGAT
TTCATGGAGAGGTGGCAGGCTACTTTGGCGGAGAAAGCTTCGATAGAGGC
AGAGGCGAAGTCGGCAGCTCTAGACGCTGCCAAGGCTGATCTGGAGACGC
ACGGACTGGAGAGGGCCGCGAAGAAGGAGGCTAAGATGGGTCGGAACAGG
GAAGAAGAACAGGTCGGAACATATCAAACATTATTATTTTATTGTTCAAC
AGATCAGGACAGAACGACATGTGCCATTGCCATGGGTCGCTACACTGTTG
TCCAGCTGGCTAAGATGGACCAGATGAAGGCACAGATCGCAAATGTGTTA
ATTATAGTATGTGAGAGAACAGATCTGAACAGATCAACATGATGATTTCA
TGGAGAGGTGGCAGGCTACTTTGGCGGAGAAAGCTTCGATAGAGGCAGAG
GCGAAGTCGGCAGCTCTAGACGCTGCCAAGGCTGATCTGGAGACGCACGG
ACTGGAGAGGGCCGCGAAGAAGGAGGCTAAGATGGGTCGGAACAGGGAAG
AAGAACAGGTCGGAACATATCAAACATTATTATTTTATTGTTCAACAGAT
CAGGACAGAACGACATGTGCCATTGCCATGGGTCGCTACACTGTTGTCCA
GCTGGCTAAGATGGACCAGATGAAGGCACAGATCGCAAATGTGTTAATTA
TAGTATGTGAGAGAACAGATCTGAACAGATCAACATGA
back to top