prot_H-paniculata_contig4581.11476.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig4581.11476.1
Unique Nameprot_H-paniculata_contig4581.11476.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length248
Homology
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BLAST of mRNA_H-paniculata_contig4581.11476.1 vs. uniprot
Match: D7G9H3_ECTSI (Clathrin light chain n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G9H3_ECTSI)

HSP 1 Score: 135 bits (339), Expect = 1.990e-35
Identity = 113/198 (57.07%), Postives = 129/198 (65.15%), Query Frame = 0 
Query:    1 MDGTDDFFTGG---PVEQQGGVGVGVGVPVDGAASAEGGGAPEGSFQDLGGXXXXXXXXXXXXXXXXXXAYEQQQPNGD-GQSNG--FDPGVGGFAQ---GYASLDNDAMGGGVGXXXXXXXXNLPDMGMPAPEDVEPSALDDFMERWQATLAEKASIEAEAKSAALDAAKADLETHGLERAAKKEAKMGRNREEEQV 189
            MDG DDFFTG    P +QQGG                        + DLG            XXXXXXX ++QQ PNG+  Q+NG  FD G+G F Q   GYA+LD D  GG     XXXXXX +PDMGMPAPEDVEPSALD+FMERWQA L EKA IEAEAK+AAL+AAKADLETH +ERAA KEAKMG+NRE+EQ+
Sbjct:    1 MDGGDDFFTGAEDAPEQQQGG------------------------YNDLGSGEYGATGGDYGXXXXXXXXFDQQ-PNGEVAQANGTGFDNGMG-FQQDNMGYATLD-DPSGGSX---XXXXXXXMPDMGMPAPEDVEPSALDEFMERWQAGLVEKARIEAEAKAAALEAAKADLETHSVERAANKEAKMGQNREQEQI 168
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4581.11476.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G9H3_ECTSI1.990e-3557.07Clathrin light chain n=2 Tax=Ectocarpus TaxID=2879... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 144..164

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4581contigH-paniculata_contig4581:2859..11732 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4581.11476.1mRNA_H-paniculata_contig4581.11476.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig4581 2594..12079 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig4581.11476.1 ID=prot_H-paniculata_contig4581.11476.1|Name=mRNA_H-paniculata_contig4581.11476.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=248bp
MDGTDDFFTGGPVEQQGGVGVGVGVPVDGAASAEGGGAPEGSFQDLGGGD
YGGNADYGNGDFNAGGAYEQQQPNGDGQSNGFDPGVGGFAQGYASLDNDA
MGGGVGNGMGDGMGNLPDMGMPAPEDVEPSALDDFMERWQATLAEKASIE
AEAKSAALDAAKADLETHGLERAAKKEAKMGRNREEEQVGTYQTLLFYCS
TDQDRTTCAIAMGRYTVVQLAKMDQMKAQIANVLIIVCERTDLNRST*
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