mRNA_H-paniculata_contig4578.11472.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4578.11472.1
Unique NamemRNA_H-paniculata_contig4578.11472.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4578.11472.1 vs. uniprot
Match: D7G8M0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8M0_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 4.340e-18
Identity = 43/62 (69.35%), Postives = 54/62 (87.10%), Query Frame = 1 
Query:   34 SAAIMRLSSTYHLYKIALLITPSNAAKDSVIVRAGEISKALYFVISGSVEVIQFKKRRVPNR 219
            S A+MR+SSTYHLYKIALL+   +A KDS+I+RAGE SKALYFV+SG+VEVIQ K++RV N+
Sbjct:    5 SVAMMRMSSTYHLYKIALLVKTDDAVKDSMILRAGEPSKALYFVVSGTVEVIQLKRKRVRNQ 66
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4578.11472.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G8M0_ECTSI4.340e-1869.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4578contigH-paniculata_contig4578:8248..9769 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRmlC-like jelly roll fold
Ec32 orthologEc-00_010990.1
Exons3
Model size313
Cds size312
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4578.11472.1prot_H-paniculata_contig4578.11472.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4578 8248..9769 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930370.6196792-CDS-H-paniculata_contig4578:8247..82791622930370.6196792-CDS-H-paniculata_contig4578:8247..8279Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4578 8248..8279 +
1691481261.5791004-CDS-H-paniculata_contig4578:8247..82791691481261.5791004-CDS-H-paniculata_contig4578:8247..8279Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4578 8248..8279 +
1622930370.636768-CDS-H-paniculata_contig4578:8798..89581622930370.636768-CDS-H-paniculata_contig4578:8798..8958Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4578 8799..8958 +
1691481261.5970445-CDS-H-paniculata_contig4578:8798..89581691481261.5970445-CDS-H-paniculata_contig4578:8798..8958Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4578 8799..8958 +
1622930370.6546402-CDS-H-paniculata_contig4578:9649..97691622930370.6546402-CDS-H-paniculata_contig4578:9649..9769Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4578 9650..9769 +
1691481261.607921-CDS-H-paniculata_contig4578:9649..97691691481261.607921-CDS-H-paniculata_contig4578:9649..9769Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4578 9650..9769 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4578.11472.1

>prot_H-paniculata_contig4578.11472.1 ID=prot_H-paniculata_contig4578.11472.1|Name=mRNA_H-paniculata_contig4578.11472.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=104bp
MTLDDKCHYLTSAAIMRLSSTYHLYKIALLITPSNAAKDSVIVRAGEISK
ALYFVISGSVEVIQFKKRRVPNRDARKMNVVGKDGGSGADPQEMGAGGRG
ASGG
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mRNA from alignment at H-paniculata_contig4578:8248..9769+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4578.11472.1 ID=mRNA_H-paniculata_contig4578.11472.1|Name=mRNA_H-paniculata_contig4578.11472.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1522bp|location=Sequence derived from alignment at H-paniculata_contig4578:8248..9769+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACCCTCGACGACAAGTGCCACTACCTCACGTGAGTCTAGCACGAACA
AGGGGTGACCCTCTTACATAGACCGTAGTTTGATCGTAGGCCCTCAACAA
GAGAACGGGTTTGGCGGAAGCAGGGTACGTAGTTTGGGTGGTATCGGGAT
GGAGGGAAGAGTGTCATGTTGCTAAAGCTGGCGAGGTGTGTCATAACACG
ATCGTTTGGGGTAAAACGCGGTGGCGTGTACTCGGTTCGTTCGCGGGCAT
CAGATATATTAGTCTGTTCTGCGCGCGGCAATACAATCCAAGTGATGTGT
TAGCCCGTCCTACCGTGGGTAGTTTGCCAGCGTTTTTAGGTTGCGTTGTC
TGGACGGTGTAGTACTAAAACGTCGAAACATGTACTGATAGCCACCCGTC
CAATTTGATAAAAGCATAGACCTCATCGGACAGAACCAAGTGGGCGACAG
GTCGCCGATAGCGCGGTAGATGCCAAAAATGGGACAAGCTCGTGATCGCC
TACACGTGCACTTGACTACTGTCTTCCCCAAACGGTTGTGGTTATTCGCA
GGAGCGCCGCCATCATGAGACTGAGCTCAACGTACCACTTGTACAAGATA
GCTCTGCTCATCACGCCGAGCAATGCCGCCAAAGACAGTGTCATCGTGAG
GGCTGGGGAGATATCCAAGGCTCTGTACTTCGTCATTTCTGGCTCAGTGG
AAGTGATACAGGCACGTCTCGAGTTTGTCCATGCCGCGGTTCTGTGCCTA
TGCTACTGTATGTCTTCATCTGCACGCGAACAGCCTGCTTCCTTCATCCA
AGGGTTAAACTGGCCGTATCGGTACTCCAAAGCTCGATAGGTTGCTCATA
GTTCCATTGATTCCGTTGCACACTACCGGTACTACCCCACGCCATAGCTT
TGACTGCTTTCGGCCCTCCCCTGATCATTGGATCTGAGTCACTGTCCATC
AAAGCACAGAGGTATGCAATGGTTGATCCATGATCACCTTTCCATCTATG
TGCACATGCCTCCCTGGCATTATCTCATCCGCCCGGTAGTGCTAGGTTAG
CGATTGGCCGATCGATCGATGCTCAGCGGTTATTTGTCGTGGTTGGCGCG
AGAGGTAACCGTGCCCACCCTCGGTCCCTTGTTGATGTACTCTTGTTAAT
AAATGTACACAACTGAAGGTTGAGGTCAGCTGCATAACCTCAACACGGGT
ACGATGGTGATATCATATGAGCGTTAGAGCTTAGTTCTACTAGCTGTAGC
AGGTGCGTTGACCTAGGATTTAGAATCTCGGTGGGTGAAAGGTGACAGTT
ATTAGAGTGTTGGCTCAAAACGACTTCCTTTCTCAAATTTGGATTTCGTC
ATGTAAAGCTAAGATACCCCTCCTTCGCTCTCCCTTCCACCGTGCTTCTC
AGTTTAAAAAAAGACGGGTTCCGAACCGTGACGCTCGAAAGATGAATGTT
GTTGGGAAGGACGGGGGATCGGGGGCGGATCCACAAGAAATGGGAGCAGG
AGGACGAGGAGCAAGTGGAGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig4578:8248..9769+

>mRNA_H-paniculata_contig4578.11472.1 ID=mRNA_H-paniculata_contig4578.11472.1|Name=mRNA_H-paniculata_contig4578.11472.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at H-paniculata_contig4578:8248..9769+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACCCTCGACGACAAGTGCCACTACCTCACATGACCCTCGACGACAAG
TGCCACTACCTCACGAGCGCCGCCATCATGAGACTGAGCTCAACGTACCA
CTTGTACAAGATAGCTCTGCTCATCACGCCGAGCAATGCCGCCAAAGACA
GTGTCATCGTGAGGGCTGGGGAGATATCCAAGGCTCTGTACTTCGTCATT
TCTGGCTCAGTGGAAGTGATACAGGAGCGCCGCCATCATGAGACTGAGCT
CAACGTACCACTTGTACAAGATAGCTCTGCTCATCACGCCGAGCAATGCC
GCCAAAGACAGTGTCATCGTGAGGGCTGGGGAGATATCCAAGGCTCTGTA
CTTCGTCATTTCTGGCTCAGTGGAAGTGATACAGTTTAAAAAAAGACGGG
TTCCGAACCGTGACGCTCGAAAGATGAATGTTGTTGGGAAGGACGGGGGA
TCGGGGGCGGATCCACAAGAAATGGGAGCAGGAGGACGAGGAGCAAGTGG
AGGATTTAAAAAAAGACGGGTTCCGAACCGTGACGCTCGAAAGATGAATG
TTGTTGGGAAGGACGGGGGATCGGGGGCGGATCCACAAGAAATGGGAGCA
GGAGGACGAGGAGCAAGTGGAGGA
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