mRNA_H-paniculata_contig45730.11460.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig45730.11460.1
Unique NamemRNA_H-paniculata_contig45730.11460.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig45730.11460.1 vs. uniprot
Match: A0A6H5GI29_9HEMI (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GI29_9HEMI)

HSP 1 Score: 67.4 bits (163), Expect = 7.450e-11
Identity = 33/77 (42.86%), Postives = 48/77 (62.34%), Query Frame = 3
Query:   87 ASNRMLLAKAAAKDGKLRHFDAEQASLKVDVDKEVYIEIPERFQHFPGEVVKLNKAIYGLVQAGRCWNIKHPIVILE 317
            +S R L++ AA KD  + H D + A L  D+++E+Y+  P  F    G+V +L KA+YGL QAGRCWN K   V+ +
Sbjct:  314 SSLRFLMSMAAVKDWDIDHLDVKTAYLYGDLNEEIYVRPPANFSEPDGQVWRLKKAVYGLKQAGRCWNEKITEVLAQ 390          
BLAST of mRNA_H-paniculata_contig45730.11460.1 vs. uniprot
Match: A0A6H5GGZ1_9HEMI (Integrase catalytic domain-containing protein (Fragment) n=2 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GGZ1_9HEMI)

HSP 1 Score: 67.4 bits (163), Expect = 7.700e-11
Identity = 33/77 (42.86%), Postives = 48/77 (62.34%), Query Frame = 3
Query:   87 ASNRMLLAKAAAKDGKLRHFDAEQASLKVDVDKEVYIEIPERFQHFPGEVVKLNKAIYGLVQAGRCWNIKHPIVILE 317
            +S R L++ AA KD  + H D + A L  D+++E+Y+  P  F    G+V +L KA+YGL QAGRCWN K   V+ +
Sbjct:  919 SSLRFLMSMAAVKDWDIDHLDVKTAYLYGDLNEEIYVRPPANFSEPDGQVWRLKKAVYGLKQAGRCWNEKITEVLAQ 995          
BLAST of mRNA_H-paniculata_contig45730.11460.1 vs. uniprot
Match: A0A6H5JUE2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUE2_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 1.830e-10
Identity = 31/88 (35.23%), Postives = 51/88 (57.95%), Query Frame = 3
Query:   57 HREVFITPATASNRMLLAKAAAKDGKLRHFDAEQASLKVDVDKEVYIEIPERFQHFPGEVVKLNKAIYGLVQAGRCWNIKHPIVILEN 320
            H      P+ AS + ++A A  K  KL H+D +QA +   + +E+Y+  PE      G+VVK+ +A+YGL+Q+GR W  +    ++EN
Sbjct:   98 HHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLTEEIYLRFPEGCGSMSGKVVKVERALYGLMQSGREWGFEAADALIEN 185          
BLAST of mRNA_H-paniculata_contig45730.11460.1 vs. uniprot
Match: A0A4Y2H625_ARAVE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2H625_ARAVE)

HSP 1 Score: 60.8 bits (146), Expect = 2.260e-9
Identity = 34/86 (39.53%), Postives = 48/86 (55.81%), Query Frame = 3
Query:   69 FITPAT--ASNRMLLAKAAAKDGKLRHFDAEQASLKVDVDKEVYIEIPERFQHFPGEVVKLNKAIYGLVQAGRCWNIKHPIVILEN 320
            F  P T  ++ RML++ A   D  +R  D   A L  +V   VYI+ P+      G+V+KLNKA+YGL  A RCWN +   V ++N
Sbjct:   61 FYAPVTRLSTVRMLISLALQNDWPIRQLDVPYAFLNRNVGHNVYIKPPDDVNVKKGKVLKLNKALYGLKDAPRCWNRRFNTVAIQN 146          
BLAST of mRNA_H-paniculata_contig45730.11460.1 vs. uniprot
Match: A0A821Y021_9NEOP (Hypothetical protein n=1 Tax=Pieris macdunnoughi TaxID=345717 RepID=A0A821Y021_9NEOP)

HSP 1 Score: 60.5 bits (145), Expect = 2.080e-8
Identity = 36/81 (44.44%), Postives = 47/81 (58.02%), Query Frame = 3
Query:   57 HREVFITPATASN-RMLLAKAAAKDGKLRHFDAEQASLKVDVDKEVYIEIPERFQHFPGEVVKLNKAIYGLVQAGRCWNIK 296
            + EV+      S+ R LLA AA    K+   DA  A L+ D+D E+Y+  P R+ +   EV KLNK+IYGL QA R WN K
Sbjct:  796 YNEVYAPVVRLSSIRYLLAIAAKYQLKIEQLDAVTAFLQGDIDVELYMSQPSRYDNGTKEVCKLNKSIYGLKQASRTWNKK 876          
BLAST of mRNA_H-paniculata_contig45730.11460.1 vs. uniprot
Match: A0A7S0RGU7_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0RGU7_9CHLO)

HSP 1 Score: 60.1 bits (144), Expect = 2.860e-8
Identity = 39/90 (43.33%), Postives = 54/90 (60.00%), Query Frame = 3
Query:   63 EVFITPAT-ASNRMLLAKAAAKDGKLRHFDAEQASLKVDVDKEVYIEIPERFQHFP--GEVV--KLNKAIYGLVQAGRCWNIKHPIVILE 317
            E+F   A   S R+L++ AAA   KLR FD E A L  D+D+EVY+  P RF+ +   GE +  KL+K++YGL QA R W +     +LE
Sbjct: 1030 ELFAPVARFTSLRVLVSLAAANGWKLRQFDIETAFLYADLDEEVYVRPPRRFEEYDDDGEELAWKLHKSLYGLRQAPRNWYLTFTTWLLE 1119          
BLAST of mRNA_H-paniculata_contig45730.11460.1 vs. uniprot
Match: A0A067Q6U0_9AGAM (Integrase catalytic domain-containing protein n=1 Tax=Jaapia argillacea MUCL 33604 TaxID=933084 RepID=A0A067Q6U0_9AGAM)

HSP 1 Score: 59.3 bits (142), Expect = 4.970e-8
Identity = 33/79 (41.77%), Postives = 48/79 (60.76%), Query Frame = 3
Query:   57 HREVFITPAT-ASNRMLLAKAAAKDGKLRHFDAEQASLKVDVDKEVYIEIPERF-QHFPGEVVKLNKAIYGLVQAGRCW 287
            + E F+  A   S + LL+ A  +D ++   D + A L  D+DKE+Y+E+PE F  H P  V +LNKA+YGL QA + W
Sbjct:  355 YEETFLPVARFESVQFLLSLATLEDWEIHGMDIKTAFLNGDLDKEIYMELPEGFGSHSPRRVARLNKALYGLKQASQQW 433          
BLAST of mRNA_H-paniculata_contig45730.11460.1 vs. uniprot
Match: Q4JQ41_EPHDI (Reverse transcriptase (Fragment) n=2 Tax=Ephedra distachya TaxID=3389 RepID=Q4JQ41_EPHDI)

HSP 1 Score: 56.6 bits (135), Expect = 7.520e-8
Identity = 35/81 (43.21%), Postives = 48/81 (59.26%), Query Frame = 3
Query:   63 EVFITPATASN-RMLLAKAAAKDGKLRHFDAEQASLKVDVDKEVYIEIPERFQHFPGE--VVKLNKAIYGLVQAGRCWNIK 296
            EVF   A     RM+LA AA +  ++ H D + A L  D+++EVY+  PE F     E  V +L+KA+YGL QA R WNI+
Sbjct:   18 EVFAPVARLDTIRMILALAAHRGWEIHHLDVKSAFLNGDLEEEVYVSQPEGFVVKAEEHKVYRLSKALYGLRQAPRTWNIR 98          
BLAST of mRNA_H-paniculata_contig45730.11460.1 vs. uniprot
Match: A0A2D4KFF2_9SAUR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Micrurus paraensis TaxID=1970185 RepID=A0A2D4KFF2_9SAUR)

HSP 1 Score: 57.8 bits (138), Expect = 9.140e-8
Identity = 35/88 (39.77%), Postives = 51/88 (57.95%), Query Frame = 3
Query:   36 ADRRDALHREVFI-TPATASNRMLLAKAAAKDGKLRHFDAEQASLKVDVDKEVY-IEIPERFQHFPGEVVKLNKAIYGLVQAGRCWNI 293
            + +++  + EVF+ T  + S R+ L  A A+D K+ HFD   ASL   + +E+Y ++ P      P  V K NKAIYGL Q+ R WNI
Sbjct:   89 SQKKNMHYDEVFVPTVKSESIRLALVLAVARDHKIWHFDIITASLNEKLKEEMYMVQAPRYESKKPNTVYKSNKAIYGLKQSARNWNI 176          
BLAST of mRNA_H-paniculata_contig45730.11460.1 vs. uniprot
Match: A0A699KMI9_TANCI (Ribonuclease H-like domain, reverse transcriptase, RNA-dependent DNA polymerase (Fragment) n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699KMI9_TANCI)

HSP 1 Score: 58.5 bits (140), Expect = 9.260e-8
Identity = 36/81 (44.44%), Postives = 47/81 (58.02%), Query Frame = 3
Query:   63 EVFITPATASN-RMLLAKAAAKDGKLRHFDAEQASLKVDVDKEVYIEIPERF--QHFPGEVVKLNKAIYGLVQAGRCWNIK 296
            EVF   A     R++LA AA    ++ H D + A L  D+ +EVY+  PE F  Q   G+V KL KA+YGL QA R WN+K
Sbjct:  162 EVFAPVARIETVRLILALAAHHGWQVHHLDVKSAFLHRDLKEEVYVTQPEGFIQQGNSGKVYKLTKALYGLRQAPRAWNVK 242          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig45730.11460.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5GI29_9HEMI7.450e-1142.86Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5GGZ1_9HEMI7.700e-1142.86Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5JUE2_9PHAE1.830e-1035.23Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A4Y2H625_ARAVE2.260e-939.53Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A821Y021_9NEOP2.080e-844.44Hypothetical protein n=1 Tax=Pieris macdunnoughi T... [more]
A0A7S0RGU7_9CHLO2.860e-843.33Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
A0A067Q6U0_9AGAM4.970e-841.77Integrase catalytic domain-containing protein n=1 ... [more]
Q4JQ41_EPHDI7.520e-843.21Reverse transcriptase (Fragment) n=2 Tax=Ephedra d... [more]
A0A2D4KFF2_9SAUR9.140e-839.77Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A699KMI9_TANCI9.260e-844.44Ribonuclease H-like domain, reverse transcriptase,... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig45730contigH-paniculata_contig45730:804..1123 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score65.5
Seed ortholog evalue1.2e-08
Seed eggNOG ortholog7425.NV17808-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Encoded by
EggNOG OGs38DPC@33154,3BI7U@33208,3CTS1@33213,3SH01@50557,41WYJ@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Exons1
Model size322
Cds size222
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930368.9518375-UTR-H-paniculata_contig45730:803..9011622930368.9518375-UTR-H-paniculata_contig45730:803..901Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig45730 804..901 +
1691481261.0082092-UTR-H-paniculata_contig45730:803..9011691481261.0082092-UTR-H-paniculata_contig45730:803..901Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig45730 804..901 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930368.9666996-CDS-H-paniculata_contig45730:901..11231622930368.9666996-CDS-H-paniculata_contig45730:901..1123Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45730 902..1123 +
1691481261.0226922-CDS-H-paniculata_contig45730:901..11231691481261.0226922-CDS-H-paniculata_contig45730:901..1123Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45730 902..1123 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig45730.11460.1prot_H-paniculata_contig45730.11460.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig45730 902..1123 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig45730.11460.1

>prot_H-paniculata_contig45730.11460.1 ID=prot_H-paniculata_contig45730.11460.1|Name=mRNA_H-paniculata_contig45730.11460.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=74bp
MLLAKAAAKDGKLRHFDAEQASLKVDVDKEVYIEIPERFQHFPGEVVKLN
KAIYGLVQAGRCWNIKHPIVILEN
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mRNA from alignment at H-paniculata_contig45730:804..1123+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig45730.11460.1 ID=mRNA_H-paniculata_contig45730.11460.1|Name=mRNA_H-paniculata_contig45730.11460.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=320bp|location=Sequence derived from alignment at H-paniculata_contig45730:804..1123+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGTACAAATGTAGCCTTGTCGCCCAGCGCTTCCGGCAGATCGAAGGGAT GCACTACACCGAGAAGTATTCATCACGCCGGCGACCGCGTCCAATCGGAT GCTCTTGGCGAAAGCAGCCGCGAAAGACGGAAAGCTGCGACATTTCGACG CGGAACAGGCGTCTCTGAAGGTGGACGTTGACAAGGAGGTGTACATCGAG ATCCCCGAAAGGTTCCAACATTTCCCGGGAGAAGTGGTTAAGCTGAACAA GGCAATCTACGGGCTCGTTCAGGCGGGGAGATGCTGGAACATCAAACATC CGATTGTCATACTTGAGAAT
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Coding sequence (CDS) from alignment at H-paniculata_contig45730:804..1123+

>mRNA_H-paniculata_contig45730.11460.1 ID=mRNA_H-paniculata_contig45730.11460.1|Name=mRNA_H-paniculata_contig45730.11460.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=444bp|location=Sequence derived from alignment at H-paniculata_contig45730:804..1123+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTCTTGGCGAAAGCAGCCGCGAAAGACGGAAAGCTGCGACATTTCGA
CGCGGAACAGGCGTCTCTGAAGGTGGACGTTGACAAGGAGGTGTACATCG
AGATCCCCGAAAGGTTCCAACATTTCCCGGGAGAAGTGGTTAAGCTGAAC
AAGGCAATCTACGGGCTCGTTCAGGCGGGGAGATGCTGGAACATCAAACA
TCCGATTGTCATACTTGAGAATATGCTCTTGGCGAAAGCAGCCGCGAAAG
ACGGAAAGCTGCGACATTTCGACGCGGAACAGGCGTCTCTGAAGGTGGAC
GTTGACAAGGAGGTGTACATCGAGATCCCCGAAAGGTTCCAACATTTCCC
GGGAGAAGTGGTTAAGCTGAACAAGGCAATCTACGGGCTCGTTCAGGCGG
GGAGATGCTGGAACATCAAACATCCGATTGTCATACTTGAGAAT
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