prot_H-paniculata_contig45730.11460.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig45730.11460.1
Unique Nameprot_H-paniculata_contig45730.11460.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length74
Homology
BLAST of mRNA_H-paniculata_contig45730.11460.1 vs. uniprot
Match: A0A6H5GI29_9HEMI (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GI29_9HEMI)

HSP 1 Score: 63.5 bits (153), Expect = 4.940e-10
Identity = 31/72 (43.06%), Postives = 45/72 (62.50%), Query Frame = 0
Query:    2 LLAKAAAKDGKLRHFDAEQASLKVDVDKEVYIEIPERFQHFPGEVVKLNKAIYGLVQAGRCWNIKHPIVILE 73
            L++ AA KD  + H D + A L  D+++E+Y+  P  F    G+V +L KA+YGL QAGRCWN K   V+ +
Sbjct:  319 LMSMAAVKDWDIDHLDVKTAYLYGDLNEEIYVRPPANFSEPDGQVWRLKKAVYGLKQAGRCWNEKITEVLAQ 390          
BLAST of mRNA_H-paniculata_contig45730.11460.1 vs. uniprot
Match: A0A6H5GGZ1_9HEMI (Integrase catalytic domain-containing protein (Fragment) n=2 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GGZ1_9HEMI)

HSP 1 Score: 63.5 bits (153), Expect = 5.020e-10
Identity = 31/72 (43.06%), Postives = 45/72 (62.50%), Query Frame = 0
Query:    2 LLAKAAAKDGKLRHFDAEQASLKVDVDKEVYIEIPERFQHFPGEVVKLNKAIYGLVQAGRCWNIKHPIVILE 73
            L++ AA KD  + H D + A L  D+++E+Y+  P  F    G+V +L KA+YGL QAGRCWN K   V+ +
Sbjct:  924 LMSMAAVKDWDIDHLDVKTAYLYGDLNEEIYVRPPANFSEPDGQVWRLKKAVYGLKQAGRCWNEKITEVLAQ 995          
BLAST of mRNA_H-paniculata_contig45730.11460.1 vs. uniprot
Match: A0A146LHR9_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Lygus hesperus TaxID=30085 RepID=A0A146LHR9_LYGHE)

HSP 1 Score: 59.3 bits (142), Expect = 1.540e-8
Identity = 31/72 (43.06%), Postives = 46/72 (63.89%), Query Frame = 0
Query:    2 LLAKAAAKDGKLRHFDAEQASLKVDVDKEVYIEIPERFQHFPGEVVKLNKAIYGLVQAGRCWNIKHPIVILE 73
            LL+ AA+K+ KL  FD   A L   +++E+YI+ PE F     +V KLN+++YGL QA RCWN +    +L+
Sbjct:  338 LLSVAASKNMKLMQFDVSTAFLYGYLEEEIYIKQPEGFDDGSNKVCKLNRSLYGLKQAPRCWNQRFAAFLLK 409          
BLAST of mRNA_H-paniculata_contig45730.11460.1 vs. uniprot
Match: A0A0V1K2T2_TRIPS (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=7 Tax=Trichinella TaxID=6333 RepID=A0A0V1K2T2_TRIPS)

HSP 1 Score: 59.3 bits (142), Expect = 1.550e-8
Identity = 30/65 (46.15%), Postives = 46/65 (70.77%), Query Frame = 0
Query:    2 LLAKAAAKDGKLRHFDAEQASLKVDVDKEVYIEIPERFQHFPGEVVKLNKAIYGLVQAGRCWNIK 66
            LL+ AAA+  KL+ FD + A L   + +EVY++ PE F++   +V KLN+++YGL QA RCWN++
Sbjct:  596 LLSIAAAERLKLQQFDVKTAFLYGALKEEVYVKQPEGFENGTNQVYKLNRSLYGLKQAPRCWNLR 660          
BLAST of mRNA_H-paniculata_contig45730.11460.1 vs. uniprot
Match: A0A0V1IPN2_TRIPS (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trichinella pseudospiralis TaxID=6337 RepID=A0A0V1IPN2_TRIPS)

HSP 1 Score: 59.3 bits (142), Expect = 1.560e-8
Identity = 30/65 (46.15%), Postives = 46/65 (70.77%), Query Frame = 0
Query:    2 LLAKAAAKDGKLRHFDAEQASLKVDVDKEVYIEIPERFQHFPGEVVKLNKAIYGLVQAGRCWNIK 66
            LL+ AAA+  KL+ FD + A L   + +EVY++ PE F++   +V KLN+++YGL QA RCWN++
Sbjct:  835 LLSIAAAERLKLQQFDVKTAFLYGALKEEVYVKQPEGFENGTNQVYKLNRSLYGLKQAPRCWNLR 899          
BLAST of mRNA_H-paniculata_contig45730.11460.1 vs. uniprot
Match: A0A6H5JUE2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUE2_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 3.870e-8
Identity = 27/73 (36.99%), Postives = 45/73 (61.64%), Query Frame = 0
Query:    2 LLAKAAAKDGKLRHFDAEQASLKVDVDKEVYIEIPERFQHFPGEVVKLNKAIYGLVQAGRCWNIKHPIVILEN 74
            ++A A  K  KL H+D +QA +   + +E+Y+  PE      G+VVK+ +A+YGL+Q+GR W  +    ++EN
Sbjct:  113 VIAVATEKGKKLAHWDVKQAYIHAKLTEEIYLRFPEGCGSMSGKVVKVERALYGLMQSGREWGFEAADALIEN 185          
BLAST of mRNA_H-paniculata_contig45730.11460.1 vs. uniprot
Match: A0A5N6P541_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6P541_9ASTR)

HSP 1 Score: 58.2 bits (139), Expect = 3.890e-8
Identity = 33/76 (43.42%), Postives = 49/76 (64.47%), Query Frame = 0
Query:    1 MLLAKAAAKDGKLRHFDAEQASLKVDVDKEVYIEIPERFQH--FPGEVVKLNKAIYGLVQAGRCWNIKHPIVILEN 74
            ++LA +A K   + H D + A L  D++++V++E P+ F+     G+V KLNKA+YGL QA R WNIK   V+ EN
Sbjct:  162 LVLAISAQKGWFVHHLDVKTAFLHGDLNEKVFVEQPQGFEKKGCEGKVYKLNKALYGLKQAPRAWNIKLDGVLKEN 237          
BLAST of mRNA_H-paniculata_contig45730.11460.1 vs. uniprot
Match: A0A1Y3ET37_9BILA (Reverse transcriptase (Fragment) n=1 Tax=Trichinella nativa TaxID=6335 RepID=A0A1Y3ET37_9BILA)

HSP 1 Score: 57.8 bits (138), Expect = 4.110e-8
Identity = 29/65 (44.62%), Postives = 45/65 (69.23%), Query Frame = 0
Query:    2 LLAKAAAKDGKLRHFDAEQASLKVDVDKEVYIEIPERFQHFPGEVVKLNKAIYGLVQAGRCWNIK 66
            LL+ AA +  KL+ FD + A L   + +EVY++ PE F++   +V KLN+++YGL QA RCWN++
Sbjct:   90 LLSIAAVERLKLQQFDVKTAFLYGALKEEVYVKQPEGFENGTNQVYKLNRSLYGLKQAPRCWNLR 154          
BLAST of mRNA_H-paniculata_contig45730.11460.1 vs. uniprot
Match: A0A443RX02_9ACAR (Retrovirus-related Pol polyprotein from transposon TNT 1-94-like protein (Fragment) n=1 Tax=Leptotrombidium deliense TaxID=299467 RepID=A0A443RX02_9ACAR)

HSP 1 Score: 57.4 bits (137), Expect = 4.530e-8
Identity = 29/65 (44.62%), Postives = 42/65 (64.62%), Query Frame = 0
Query:    2 LLAKAAAKDGKLRHFDAEQASLKVDVDKEVYIEIPERFQHFPGEVVKLNKAIYGLVQAGRCWNIK 66
            +LA AA +D +L  FD + A L  D+ +E+Y+E P+ F      V +L K++YGL QA RCWN+K
Sbjct:   71 ILAIAAHEDMELVQFDVKTAFLHGDLKEEIYMEQPQGFSDGSSRVCRLQKSLYGLKQAPRCWNVK 135          
BLAST of mRNA_H-paniculata_contig45730.11460.1 vs. uniprot
Match: A0A0V1NCR1_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=3 Tax=Trichinella TaxID=6333 RepID=A0A0V1NCR1_9BILA)

HSP 1 Score: 57.8 bits (138), Expect = 5.310e-8
Identity = 29/65 (44.62%), Postives = 45/65 (69.23%), Query Frame = 0
Query:    2 LLAKAAAKDGKLRHFDAEQASLKVDVDKEVYIEIPERFQHFPGEVVKLNKAIYGLVQAGRCWNIK 66
            LL+ AA +  KL+ FD + A L   + +EVY++ PE F++   +V KLN+++YGL QA RCWN++
Sbjct:  161 LLSIAAVERLKLQQFDVKTAFLYGALKEEVYVKQPEGFENGTNQVYKLNRSLYGLKQAPRCWNLR 225          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig45730.11460.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5GI29_9HEMI4.940e-1043.06Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5GGZ1_9HEMI5.020e-1043.06Integrase catalytic domain-containing protein (Fra... [more]
A0A146LHR9_LYGHE1.540e-843.06Retrovirus-related Pol polyprotein from transposon... [more]
A0A0V1K2T2_TRIPS1.550e-846.15Retrovirus-related Pol polyprotein from transposon... [more]
A0A0V1IPN2_TRIPS1.560e-846.15Retrovirus-related Pol polyprotein from transposon... [more]
A0A6H5JUE2_9PHAE3.870e-836.99Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5N6P541_9ASTR3.890e-843.42Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A1Y3ET37_9BILA4.110e-844.62Reverse transcriptase (Fragment) n=1 Tax=Trichinel... [more]
A0A443RX02_9ACAR4.530e-844.62Retrovirus-related Pol polyprotein from transposon... [more]
A0A0V1NCR1_9BILA5.310e-844.62Retrovirus-related Pol polyprotein from transposon... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 1..66
e-value: 5.1E-12
score: 46.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig45730contigH-paniculata_contig45730:902..1123 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig45730.11460.1mRNA_H-paniculata_contig45730.11460.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig45730 804..1123 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig45730.11460.1 ID=prot_H-paniculata_contig45730.11460.1|Name=mRNA_H-paniculata_contig45730.11460.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=74bp
MLLAKAAAKDGKLRHFDAEQASLKVDVDKEVYIEIPERFQHFPGEVVKLN
KAIYGLVQAGRCWNIKHPIVILEN
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2