mRNA_H-paniculata_contig45730.11460.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig45730.11460.1 vs. uniprot
Match: A0A6H5GI29_9HEMI (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GI29_9HEMI) HSP 1 Score: 67.4 bits (163), Expect = 7.450e-11 Identity = 33/77 (42.86%), Postives = 48/77 (62.34%), Query Frame = 3
Query: 87 ASNRMLLAKAAAKDGKLRHFDAEQASLKVDVDKEVYIEIPERFQHFPGEVVKLNKAIYGLVQAGRCWNIKHPIVILE 317
+S R L++ AA KD + H D + A L D+++E+Y+ P F G+V +L KA+YGL QAGRCWN K V+ +
Sbjct: 314 SSLRFLMSMAAVKDWDIDHLDVKTAYLYGDLNEEIYVRPPANFSEPDGQVWRLKKAVYGLKQAGRCWNEKITEVLAQ 390
BLAST of mRNA_H-paniculata_contig45730.11460.1 vs. uniprot
Match: A0A6H5GGZ1_9HEMI (Integrase catalytic domain-containing protein (Fragment) n=2 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GGZ1_9HEMI) HSP 1 Score: 67.4 bits (163), Expect = 7.700e-11 Identity = 33/77 (42.86%), Postives = 48/77 (62.34%), Query Frame = 3
Query: 87 ASNRMLLAKAAAKDGKLRHFDAEQASLKVDVDKEVYIEIPERFQHFPGEVVKLNKAIYGLVQAGRCWNIKHPIVILE 317
+S R L++ AA KD + H D + A L D+++E+Y+ P F G+V +L KA+YGL QAGRCWN K V+ +
Sbjct: 919 SSLRFLMSMAAVKDWDIDHLDVKTAYLYGDLNEEIYVRPPANFSEPDGQVWRLKKAVYGLKQAGRCWNEKITEVLAQ 995
BLAST of mRNA_H-paniculata_contig45730.11460.1 vs. uniprot
Match: A0A6H5JUE2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUE2_9PHAE) HSP 1 Score: 66.2 bits (160), Expect = 1.830e-10 Identity = 31/88 (35.23%), Postives = 51/88 (57.95%), Query Frame = 3
Query: 57 HREVFITPATASNRMLLAKAAAKDGKLRHFDAEQASLKVDVDKEVYIEIPERFQHFPGEVVKLNKAIYGLVQAGRCWNIKHPIVILEN 320
H P+ AS + ++A A K KL H+D +QA + + +E+Y+ PE G+VVK+ +A+YGL+Q+GR W + ++EN
Sbjct: 98 HHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLTEEIYLRFPEGCGSMSGKVVKVERALYGLMQSGREWGFEAADALIEN 185
BLAST of mRNA_H-paniculata_contig45730.11460.1 vs. uniprot
Match: A0A4Y2H625_ARAVE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2H625_ARAVE) HSP 1 Score: 60.8 bits (146), Expect = 2.260e-9 Identity = 34/86 (39.53%), Postives = 48/86 (55.81%), Query Frame = 3
Query: 69 FITPAT--ASNRMLLAKAAAKDGKLRHFDAEQASLKVDVDKEVYIEIPERFQHFPGEVVKLNKAIYGLVQAGRCWNIKHPIVILEN 320
F P T ++ RML++ A D +R D A L +V VYI+ P+ G+V+KLNKA+YGL A RCWN + V ++N
Sbjct: 61 FYAPVTRLSTVRMLISLALQNDWPIRQLDVPYAFLNRNVGHNVYIKPPDDVNVKKGKVLKLNKALYGLKDAPRCWNRRFNTVAIQN 146
BLAST of mRNA_H-paniculata_contig45730.11460.1 vs. uniprot
Match: A0A821Y021_9NEOP (Hypothetical protein n=1 Tax=Pieris macdunnoughi TaxID=345717 RepID=A0A821Y021_9NEOP) HSP 1 Score: 60.5 bits (145), Expect = 2.080e-8 Identity = 36/81 (44.44%), Postives = 47/81 (58.02%), Query Frame = 3
Query: 57 HREVFITPATASN-RMLLAKAAAKDGKLRHFDAEQASLKVDVDKEVYIEIPERFQHFPGEVVKLNKAIYGLVQAGRCWNIK 296
+ EV+ S+ R LLA AA K+ DA A L+ D+D E+Y+ P R+ + EV KLNK+IYGL QA R WN K
Sbjct: 796 YNEVYAPVVRLSSIRYLLAIAAKYQLKIEQLDAVTAFLQGDIDVELYMSQPSRYDNGTKEVCKLNKSIYGLKQASRTWNKK 876
BLAST of mRNA_H-paniculata_contig45730.11460.1 vs. uniprot
Match: A0A7S0RGU7_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0RGU7_9CHLO) HSP 1 Score: 60.1 bits (144), Expect = 2.860e-8 Identity = 39/90 (43.33%), Postives = 54/90 (60.00%), Query Frame = 3
Query: 63 EVFITPAT-ASNRMLLAKAAAKDGKLRHFDAEQASLKVDVDKEVYIEIPERFQHFP--GEVV--KLNKAIYGLVQAGRCWNIKHPIVILE 317
E+F A S R+L++ AAA KLR FD E A L D+D+EVY+ P RF+ + GE + KL+K++YGL QA R W + +LE
Sbjct: 1030 ELFAPVARFTSLRVLVSLAAANGWKLRQFDIETAFLYADLDEEVYVRPPRRFEEYDDDGEELAWKLHKSLYGLRQAPRNWYLTFTTWLLE 1119
BLAST of mRNA_H-paniculata_contig45730.11460.1 vs. uniprot
Match: A0A067Q6U0_9AGAM (Integrase catalytic domain-containing protein n=1 Tax=Jaapia argillacea MUCL 33604 TaxID=933084 RepID=A0A067Q6U0_9AGAM) HSP 1 Score: 59.3 bits (142), Expect = 4.970e-8 Identity = 33/79 (41.77%), Postives = 48/79 (60.76%), Query Frame = 3
Query: 57 HREVFITPAT-ASNRMLLAKAAAKDGKLRHFDAEQASLKVDVDKEVYIEIPERF-QHFPGEVVKLNKAIYGLVQAGRCW 287
+ E F+ A S + LL+ A +D ++ D + A L D+DKE+Y+E+PE F H P V +LNKA+YGL QA + W
Sbjct: 355 YEETFLPVARFESVQFLLSLATLEDWEIHGMDIKTAFLNGDLDKEIYMELPEGFGSHSPRRVARLNKALYGLKQASQQW 433
BLAST of mRNA_H-paniculata_contig45730.11460.1 vs. uniprot
Match: Q4JQ41_EPHDI (Reverse transcriptase (Fragment) n=2 Tax=Ephedra distachya TaxID=3389 RepID=Q4JQ41_EPHDI) HSP 1 Score: 56.6 bits (135), Expect = 7.520e-8 Identity = 35/81 (43.21%), Postives = 48/81 (59.26%), Query Frame = 3
Query: 63 EVFITPATASN-RMLLAKAAAKDGKLRHFDAEQASLKVDVDKEVYIEIPERFQHFPGE--VVKLNKAIYGLVQAGRCWNIK 296
EVF A RM+LA AA + ++ H D + A L D+++EVY+ PE F E V +L+KA+YGL QA R WNI+
Sbjct: 18 EVFAPVARLDTIRMILALAAHRGWEIHHLDVKSAFLNGDLEEEVYVSQPEGFVVKAEEHKVYRLSKALYGLRQAPRTWNIR 98
BLAST of mRNA_H-paniculata_contig45730.11460.1 vs. uniprot
Match: A0A2D4KFF2_9SAUR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Micrurus paraensis TaxID=1970185 RepID=A0A2D4KFF2_9SAUR) HSP 1 Score: 57.8 bits (138), Expect = 9.140e-8 Identity = 35/88 (39.77%), Postives = 51/88 (57.95%), Query Frame = 3
Query: 36 ADRRDALHREVFI-TPATASNRMLLAKAAAKDGKLRHFDAEQASLKVDVDKEVY-IEIPERFQHFPGEVVKLNKAIYGLVQAGRCWNI 293
+ +++ + EVF+ T + S R+ L A A+D K+ HFD ASL + +E+Y ++ P P V K NKAIYGL Q+ R WNI
Sbjct: 89 SQKKNMHYDEVFVPTVKSESIRLALVLAVARDHKIWHFDIITASLNEKLKEEMYMVQAPRYESKKPNTVYKSNKAIYGLKQSARNWNI 176
BLAST of mRNA_H-paniculata_contig45730.11460.1 vs. uniprot
Match: A0A699KMI9_TANCI (Ribonuclease H-like domain, reverse transcriptase, RNA-dependent DNA polymerase (Fragment) n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699KMI9_TANCI) HSP 1 Score: 58.5 bits (140), Expect = 9.260e-8 Identity = 36/81 (44.44%), Postives = 47/81 (58.02%), Query Frame = 3
Query: 63 EVFITPATASN-RMLLAKAAAKDGKLRHFDAEQASLKVDVDKEVYIEIPERF--QHFPGEVVKLNKAIYGLVQAGRCWNIK 296
EVF A R++LA AA ++ H D + A L D+ +EVY+ PE F Q G+V KL KA+YGL QA R WN+K
Sbjct: 162 EVFAPVARIETVRLILALAAHHGWQVHHLDVKSAFLHRDLKEEVYVTQPEGFIQQGNSGKVYKLTKALYGLRQAPRAWNVK 242 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig45730.11460.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig45730.11460.1 >prot_H-paniculata_contig45730.11460.1 ID=prot_H-paniculata_contig45730.11460.1|Name=mRNA_H-paniculata_contig45730.11460.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=74bp MLLAKAAAKDGKLRHFDAEQASLKVDVDKEVYIEIPERFQHFPGEVVKLNback to top mRNA from alignment at H-paniculata_contig45730:804..1123+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig45730.11460.1 ID=mRNA_H-paniculata_contig45730.11460.1|Name=mRNA_H-paniculata_contig45730.11460.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=320bp|location=Sequence derived from alignment at H-paniculata_contig45730:804..1123+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig45730:804..1123+ >mRNA_H-paniculata_contig45730.11460.1 ID=mRNA_H-paniculata_contig45730.11460.1|Name=mRNA_H-paniculata_contig45730.11460.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=444bp|location=Sequence derived from alignment at H-paniculata_contig45730:804..1123+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |