mRNA_H-paniculata_contig45681.11451.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig45681.11451.1
Unique NamemRNA_H-paniculata_contig45681.11451.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig45681.11451.1 vs. uniprot
Match: D7FYI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYI2_ECTSI)

HSP 1 Score: 148 bits (374), Expect = 7.340e-42
Identity = 68/86 (79.07%), Postives = 77/86 (89.53%), Query Frame = 1
Query:    4 QAVITGRRPFFYSYDVPTGKIQKIPRIFSSGRAEKHLETFAASPDGRWLAFAGDGGYVLLVSSKSKQWAAEFKLNSPATAVAFTKD 261
            QA++TGRR FFYSYDV TGK+ KIPR+FSSGR EKHLETFAASPDG+WLAF G GGYVLL+SSK+KQWAA+FKLNS ATAV F+ D
Sbjct:   90 QAIVTGRRSFFYSYDVVTGKVLKIPRVFSSGRTEKHLETFAASPDGQWLAFIGSGGYVLLLSSKTKQWAADFKLNSTATAVTFSPD 175          
BLAST of mRNA_H-paniculata_contig45681.11451.1 vs. uniprot
Match: A0A6H5KQH1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQH1_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 2.220e-40
Identity = 68/86 (79.07%), Postives = 77/86 (89.53%), Query Frame = 1
Query:    4 QAVITGRRPFFYSYDVPTGKIQKIPRIFSSGRAEKHLETFAASPDGRWLAFAGDGGYVLLVSSKSKQWAAEFKLNSPATAVAFTKD 261
            QA++TGRR FFYSYDV TGK+ KIPR+FSSGR EKHLETFAASPDG+WLAF G GGYVLL+SSK+KQWAA+FKLNS ATAV F+ D
Sbjct:  322 QAIVTGRRSFFYSYDVATGKVLKIPRVFSSGRTEKHLETFAASPDGQWLAFIGSGGYVLLLSSKTKQWAADFKLNSTATAVTFSPD 407          
BLAST of mRNA_H-paniculata_contig45681.11451.1 vs. uniprot
Match: A0A7S1CWG3_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CWG3_CYCTE)

HSP 1 Score: 106 bits (265), Expect = 9.270e-26
Identity = 50/84 (59.52%), Postives = 61/84 (72.62%), Query Frame = 1
Query:   10 VITGRRPFFYSYDVPTGKIQKIPRIFSSGRAEKHLETFAASPDGRWLAFAGDGGYVLLVSSKSKQWAAEFKLNSPATAVAFTKD 261
            V++GRRPFFY YD   GK+  +PRI   GR EK LE FAASPDGR +AF G+ GY++LV +KSKQW A+ K+N    AVAFT D
Sbjct:  106 VVSGRRPFFYIYDSVAGKLDLVPRIM--GREEKSLERFAASPDGRTIAFVGNDGYIILVDAKSKQWMADLKMNGSVRAVAFTPD 187          
BLAST of mRNA_H-paniculata_contig45681.11451.1 vs. uniprot
Match: A0A7S3QBK5_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QBK5_9STRA)

HSP 1 Score: 103 bits (256), Expect = 9.930e-24
Identity = 47/82 (57.32%), Postives = 61/82 (74.39%), Query Frame = 1
Query:   10 VITGRRPFFYSYDVPTGKIQKIPRIFSSGRAEKHLETFAASPDGRWLAFAGDGGYVLLVSSKSKQWAAEFKLNSPATAVAFT 255
            V++GRRPFFY YD+ +GKI K+PRI   GR EK LE F  SPDG  +AF G+ GY++LV +KSK W A+FK+N  A AV+F+
Sbjct:  378 VVSGRRPFFYIYDMISGKIDKVPRI--QGRKEKSLEKFTTSPDGSLIAFIGNDGYIILVEAKSKMWVADFKMNGSARAVSFS 457          
BLAST of mRNA_H-paniculata_contig45681.11451.1 vs. uniprot
Match: A0A835Z2C0_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2C0_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 4.950e-22
Identity = 42/87 (48.28%), Postives = 63/87 (72.41%), Query Frame = 1
Query:    4 QAVITGRRPFFYSYDVPTGKIQKIPRIFSS-GRAEKHLETFAASPDGRWLAFAGDGGYVLLVSSKSKQWAAEFKLNSPATAVAFTKD 261
            Q +++G +P FY YDV +G +Q++P I ++ G+A+  L  FA SP+G W+AFA   GY++LVS+K+KQWAA+FKLN    A+ F+ D
Sbjct:  139 QVILSGDKPHFYYYDVQSGVVQRVPSIRNAAGKAQSTLAKFALSPNGEWIAFAASAGYIMLVSAKTKQWAADFKLNCSVEALVFSPD 225          
BLAST of mRNA_H-paniculata_contig45681.11451.1 vs. uniprot
Match: A0A6P8I2R9_ACTTE (U3 small nucleolar RNA-associated protein 18 homolog isoform X1 n=2 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8I2R9_ACTTE)

HSP 1 Score: 92.0 bits (227), Expect = 7.600e-20
Identity = 43/86 (50.00%), Postives = 56/86 (65.12%), Query Frame = 1
Query:    4 QAVITGRRPFFYSYDVPTGKIQKIPRIFSSGRAEKHLETFAASPDGRWLAFAGDGGYVLLVSSKSKQWAAEFKLNSPATAVAFTKD 261
            Q ++T RR +FY YD+  GK+ +IP I   GR EK+LE F  SPDG  L F GD GY++LVSS++KQW    K+N    AV F+ D
Sbjct:  259 QVIMTSRRKYFYVYDMIKGKVIRIPHI--RGRCEKNLEKFQVSPDGSHLVFLGDNGYMMLVSSRTKQWIGNLKMNGTVGAVTFSAD 342          
BLAST of mRNA_H-paniculata_contig45681.11451.1 vs. uniprot
Match: A0A6A7G3B9_9CRUS (U3 small nucleolar RNA-associated protein 18 homolog n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7G3B9_9CRUS)

HSP 1 Score: 90.9 bits (224), Expect = 1.840e-19
Identity = 41/86 (47.67%), Postives = 60/86 (69.77%), Query Frame = 1
Query:    4 QAVITGRRPFFYSYDVPTGKIQKIPRIFSSGRAEKHLETFAASPDGRWLAFAGDGGYVLLVSSKSKQWAAEFKLNSPATAVAFTKD 261
            Q +++ RR FFYSYDV +GK+++IP+I  +GR EK LE F  SPDG  +AF G+ GY++LVS +++Q     K+N    ++AFT D
Sbjct:  235 QVIVSARRKFFYSYDVQSGKVERIPQI--TGRDEKSLERFEISPDGSCIAFLGNNGYIILVSLRTRQPIGTLKMNGSVRSIAFTSD 318          
BLAST of mRNA_H-paniculata_contig45681.11451.1 vs. uniprot
Match: A0A0D2WT18_CAPO3 (WD-repeat protein 50, variant n=2 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WT18_CAPO3)

HSP 1 Score: 90.5 bits (223), Expect = 2.730e-19
Identity = 42/85 (49.41%), Postives = 57/85 (67.06%), Query Frame = 1
Query:    4 QAVITGRRPFFYSYDVPTGKIQKIPRIFSSGRAEKHLETFAASPDGRWLAFAGDGGYVLLVSSKSKQWAAEFKLNSPATAVAFTK 258
            Q   T RR +FY++++  G I ++P I   GR EK LE+F  SPDG+ L F G  GY++LVS+ SKQW A+FK+N    AVAFT+
Sbjct:  266 QIFATSRRTWFYTFNISEGAIHRVPGI--RGREEKSLESFVVSPDGKHLVFLGKDGYIILVSTVSKQWVADFKMNGTVRAVAFTR 348          
BLAST of mRNA_H-paniculata_contig45681.11451.1 vs. uniprot
Match: UPI00106A402D (U3 small nucleolar RNA-associated protein 18 homolog n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106A402D)

HSP 1 Score: 90.1 bits (222), Expect = 3.560e-19
Identity = 38/83 (45.78%), Postives = 54/83 (65.06%), Query Frame = 1
Query:    4 QAVITGRRPFFYSYDVPTGKIQKIPRIFSSGRAEKHLETFAASPDGRWLAFAGDGGYVLLVSSKSKQWAAEFKLNSPATAVAF 252
            Q ++  +R  FY YD+  G++ +IP I   G+ EKH   F ASPDG++L F G  GY+ L+SSK+KQW A+ K+N   T +AF
Sbjct:  243 QVILASKRKHFYCYDMVNGRVTRIPEI--RGKEEKHFSNFIASPDGKYLVFPGKNGYIYLLSSKTKQWIADLKMNGSVTTIAF 323          
BLAST of mRNA_H-paniculata_contig45681.11451.1 vs. uniprot
Match: UPI000A2A62AD (U3 small nucleolar RNA-associated protein 18 homolog n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A62AD)

HSP 1 Score: 88.2 bits (217), Expect = 1.760e-18
Identity = 42/86 (48.84%), Postives = 55/86 (63.95%), Query Frame = 1
Query:    4 QAVITGRRPFFYSYDVPTGKIQKIPRIFSSGRAEKHLETFAASPDGRWLAFAGDGGYVLLVSSKSKQWAAEFKLNSPATAVAFTKD 261
            Q ++T R+ +FY YD+  G++ KIP I   GR EK  E    SPDGR + F GD GY++LVSSKSKQW    K+N    AV+F+ D
Sbjct:  253 QVIMTSRKKWFYVYDMMKGQVIKIPGI--RGRNEKKFEKCEVSPDGRHIVFLGDNGYIILVSSKSKQWIGNLKMNXKVDAVSFSAD 336          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig45681.11451.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYI2_ECTSI7.340e-4279.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KQH1_9PHAE2.220e-4079.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1CWG3_CYCTE9.270e-2659.52Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S3QBK5_9STRA9.930e-2457.32Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A835Z2C0_9STRA4.950e-2248.28WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
A0A6P8I2R9_ACTTE7.600e-2050.00U3 small nucleolar RNA-associated protein 18 homol... [more]
A0A6A7G3B9_9CRUS1.840e-1947.67U3 small nucleolar RNA-associated protein 18 homol... [more]
A0A0D2WT18_CAPO32.730e-1949.41WD-repeat protein 50, variant n=2 Tax=Capsaspora o... [more]
UPI00106A402D3.560e-1945.78U3 small nucleolar RNA-associated protein 18 homol... [more]
UPI000A2A62AD1.760e-1848.84U3 small nucleolar RNA-associated protein 18 homol... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig45681contigH-paniculata_contig45681:203..1386 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score148.7
Seed ortholog evalue1.3e-33
Seed eggNOG ortholog2880.D7FYI2
Preferred nameUTP18
KEGG rclassRC00003,RC00060,RC00181,RC00496
KEGG koko:K11422,ko:K14553
KEGG ReactionR03875,R03938,R04866,R04867
KEGG Pathwayko00310,ko03008,map00310,map03008
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000151,GO:0000462,GO:0001674,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007399,GO:0007405,GO:0008150,GO:0008152,GO:0008283,GO:0008356,GO:0009987,GO:0010467,GO:0012505,GO:0016020,GO:0016070,GO:0016072,GO:0017145,GO:0019953,GO:0022008,GO:0022412,GO:0022414,GO:0022613,GO:0030154,GO:0030490,GO:0030532,GO:0030684,GO:0030686,GO:0031090,GO:0031461,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032040,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0034388,GO:0034470,GO:0034641,GO:0034660,GO:0042078,GO:0042254,GO:0042274,GO:0042585,GO:0043073,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0044703,GO:0046483,GO:0048132,GO:0048468,GO:0048477,GO:0048609,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0051301,GO:0051704,GO:0061351,GO:0070013,GO:0071704,GO:0071840,GO:0072089,GO:0080008,GO:0090304,GO:0098722,GO:0098728,GO:0120114,GO:1901360,GO:1902494,GO:1990234,GO:1990904
EggNOG free text desc.maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
EggNOG OGsKOG2055@1,KOG2055@2759
Ec32 ortholog descriptionWD40 repeat
Ec32 orthologEc-00_004350.2
EC2.1.1.43
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009,ko03036
Exons2
Model size267
Cds size267
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930367.2757337-CDS-H-paniculata_contig45681:202..3711622930367.2757337-CDS-H-paniculata_contig45681:202..371Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45681 203..371 +
1691481260.0376794-CDS-H-paniculata_contig45681:202..3711691481260.0376794-CDS-H-paniculata_contig45681:202..371Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45681 203..371 +
1622930367.2932389-CDS-H-paniculata_contig45681:1288..13861622930367.2932389-CDS-H-paniculata_contig45681:1288..1386Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45681 1289..1386 +
1691481260.0523782-CDS-H-paniculata_contig45681:1288..13861691481260.0523782-CDS-H-paniculata_contig45681:1288..1386Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45681 1289..1386 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig45681.11451.1prot_H-paniculata_contig45681.11451.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig45681 203..1386 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig45681.11451.1

>prot_H-paniculata_contig45681.11451.1 ID=prot_H-paniculata_contig45681.11451.1|Name=mRNA_H-paniculata_contig45681.11451.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=89bp
MQAVITGRRPFFYSYDVPTGKIQKIPRIFSSGRAEKHLETFAASPDGRWL
AFAGDGGYVLLVSSKSKQWAAEFKLNSPATAVAFTKDR*
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mRNA from alignment at H-paniculata_contig45681:203..1386+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig45681.11451.1 ID=mRNA_H-paniculata_contig45681.11451.1|Name=mRNA_H-paniculata_contig45681.11451.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1184bp|location=Sequence derived from alignment at H-paniculata_contig45681:203..1386+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGGCCGTGATCACGGGGCGGCGGCCCTTCTTCTACAGTTATGATGT CCCCACGGGGAAAATCCAGAAGATTCCCAGAATTTTCTCGTCAGGCAGAG CGGAGAAACATCTGGAGACTTTCGCGGCGTCGCCCGATGGCCGGTGGTTG GCGTTCGCGGGAGATGGCGGTAAGGATGGTGTCGCATTCTAATGTCATCC TCAAATGTACTGCACCGTTATCCTCCACTTCATTGTTCTGTCATCTTCCG TGACATTGTACTGTTCTTCACTCTAGTGTGGTGAGCAGTTTGATCGACCT TCAGCTGTAGTGTGGTGAGTCAAGGTCCGAAATTTGGTGTGAAGTTCAGA CGGTTAGCTAATTATCAGGATGACCGCGGGTCTGCATGATTGGACTAGTG GGTCCCAAAATGTCTTCACCCGTGTGAGTTGTTAGCTGCTGCCGGAGGTA TCCCGAATTAGTTTGCCAAGCTTCTAGAGGAAGTACATATGACGAGTCAT CTGTGGCATGATGTACACCATAGGAGTGAGTCAAGTTTTGTTACAGGGTT ACTTTACCCAATGAGGTAGGTCATTATGCAATATTTATGGTTCGAGTTGC ACTCAACATGTTAATGTATACCCCCACCCCTCACCTTTAGGGGATGGTTT TTTCATTTTTATCTGGCTTTCACGGGATTCAGCTCCGAATAGGTCAGATA AATTCCCAAAAGCGATGAGCTAATAGAATGTGATTGTTTTTTTCTCCTGG TTCTTCTCTAGGACATTATTGGCCATGGTATCTACGGTAGAGTGCTCTGT GAACGCCCCGTGGCGAACGTTTTTCGAACCAATTTTCTCGCTAACTACGG TGCTACGGACCCGGAAAATTGTTCCATTAGAAAGATATCGTCGAGATCTA TTGATCGACGTGCTTTTTTTGAATGCACATAGGTTTTGCTGTTCATTAAA TCGAGTTGGAAAGTGCTAGCGGGGGTGTACTCTCAGCACTCTGCGGTATG TACATACGTGTGTGTGTGTGTGTGTGCAATAAAGTGCTCCATCGTTTTTC CGCGTTTCCCACGCCCGCATTTATGATTTTGTCCAGGCTACGTGCTACTG GTGTCGAGCAAGAGCAAGCAGTGGGCAGCAGAATTCAAGCTCAATTCACC GGCCACCGCCGTCGCTTTCACCAAGGACAGGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig45681:203..1386+

>mRNA_H-paniculata_contig45681.11451.1 ID=mRNA_H-paniculata_contig45681.11451.1|Name=mRNA_H-paniculata_contig45681.11451.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=534bp|location=Sequence derived from alignment at H-paniculata_contig45681:203..1386+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGGCCGTGATCACGGGGCGGCGGCCCTTCTTCTACAGTTATGATGT
CCCCACGGGGAAAATCCAGAAGATTCCCAGAATTTTCTCGTCAGGCAGAG
CGGAGAAACATCTGGAGACTTTCGCGGCGTCGCCCGATGGCCGGTGGTTG
GCGTTCGCGGGAGATGGCGATGCAGGCCGTGATCACGGGGCGGCGGCCCT
TCTTCTACAGTTATGATGTCCCCACGGGGAAAATCCAGAAGATTCCCAGA
ATTTTCTCGTCAGGCAGAGCGGAGAAACATCTGGAGACTTTCGCGGCGTC
GCCCGATGGCCGGTGGTTGGCGTTCGCGGGAGATGGCGGCTACGTGCTAC
TGGTGTCGAGCAAGAGCAAGCAGTGGGCAGCAGAATTCAAGCTCAATTCA
CCGGCCACCGCCGTCGCTTTCACCAAGGACAGGTAGGCTACGTGCTACTG
GTGTCGAGCAAGAGCAAGCAGTGGGCAGCAGAATTCAAGCTCAATTCACC
GGCCACCGCCGTCGCTTTCACCAAGGACAGGTAG
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