mRNA_H-paniculata_contig4565.11445.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4565.11445.1
Unique NamemRNA_H-paniculata_contig4565.11445.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4565.11445.1 vs. uniprot
Match: A0A6H5KST6_9PHAE (RanBP2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KST6_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 4.330e-23
Identity = 61/107 (57.01%), Postives = 72/107 (67.29%), Query Frame = 1 
Query: 1111 RVPRQAPLRARYQLRSVLHHLGRHAFAGHYVTDVRDRGSGAFRGYGVHGKDGVLEVTGGDGSAAGXXXXXXXGWKRHNDSLVSPVSEATALEGAARRSCYICFYSLV 1431
            RVPR+ PLRARY+LR +LHHLGRHAFAGHYVTDVR+  SG                 GG        XXX  GW R++DS+VSPV+EA AL G A+R+CY+CFYSLV
Sbjct:  193 RVPRKGPLRARYELRGILHHLGRHAFAGHYVTDVREERSGXXXXXXXXXXXXXXXSQGGKTERE---XXXGRGWSRYDDSVVSPVTEAEALGGEAQRTCYLCFYSLV 296
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BLAST of mRNA_H-paniculata_contig4565.11445.1 vs. uniprot
Match: D7G2P5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2P5_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 4.520e-22
Identity = 61/115 (53.04%), Postives = 75/115 (65.22%), Query Frame = 1 
Query: 1111 RVPRQAPLRARYQLRSVLHHLGRHAFAGHYVTDVRDRGSGAFRGYGVHGKD--------GVLEVTGGDGSAAGXXXXXXXGWKRHNDSLVSPVSEATALEGAARRSCYICFYSLV 1431
            RVPR+ PLRARY+LR +LHHLGRHAFAGHYVTDVR+ G G  R                G++   G  G    X      GWKR++DS+VSP++EA AL G A+R+CY+CFYSLV
Sbjct: 1375 RVPRKGPLRARYELRGILHHLGRHAFAGHYVTDVREEGGGGGRXXXXXXXXXXXXXXXXGIVGAAGSWGXXX-XREGGGRGWKRYDDSVVSPLTEAEALGGEAQRTCYLCFYSLV 1488
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BLAST of mRNA_H-paniculata_contig4565.11445.1 vs. uniprot
Match: A0A835YKZ9_9STRA (USP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKZ9_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.200e-11
Identity = 47/106 (44.34%), Postives = 57/106 (53.77%), Query Frame = 1 
Query: 1111 RVPRQAPLRARYQLRSVLHHLGRHAFAGHYVTDVRDRGSGAFRGYGVHGKDGVLEVTGGDGSAAGXXXXXXXGWKRHNDSLVSPVSEATALEGAARRSCYICFYSL 1428
            R PR APL+ARY+L +VLHHLG HAFAGHYV  VR  G GA R                              W+R++DS V  V+E  A+ GAAR +CY+ FY L
Sbjct: 1273 RPPRDAPLKARYRLAAVLHHLGPHAFAGHYVACVRS-GGGAAR------------------------------WRRYDDSEVRDVAERDAVGGAARATCYLAFYEL 1347
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4565.11445.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KST6_9PHAE4.330e-2357.01RanBP2-type domain-containing protein n=1 Tax=Ecto... [more]
D7G2P5_ECTSI4.520e-2253.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YKZ9_9STRA1.200e-1144.34USP domain-containing protein n=1 Tax=Tribonema mi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4565contigH-paniculata_contig4565:11994..15005 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.8
Seed ortholog evalue4e-22
Seed eggNOG ortholog2880.D7G2P5
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Ubiquitin carboxyl-terminal hydrolase
EggNOG OGs2EX8U@1,2SYYR@2759
Ec32 ortholog descriptionPeptidase C19, ubiquitin carboxyl-terminal hydrolase
Ec32 orthologEc-11_002980.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size1545
Cds size1344
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4565.11445.1prot_H-paniculata_contig4565.11445.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4565 12102..14912 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930366.7042694-UTR-H-paniculata_contig4565:11993..121011622930366.7042694-UTR-H-paniculata_contig4565:11993..12101Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4565 11994..12101 -
1691481259.8220232-UTR-H-paniculata_contig4565:11993..121011691481259.8220232-UTR-H-paniculata_contig4565:11993..12101Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4565 11994..12101 -
1622930366.7928407-UTR-H-paniculata_contig4565:14912..150051622930366.7928407-UTR-H-paniculata_contig4565:14912..15005Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4565 14913..15005 -
1691481259.8652442-UTR-H-paniculata_contig4565:14912..150051691481259.8652442-UTR-H-paniculata_contig4565:14912..15005Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4565 14913..15005 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930366.7254314-CDS-H-paniculata_contig4565:12101..131781622930366.7254314-CDS-H-paniculata_contig4565:12101..13178Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4565 12102..13178 -
1691481259.8348184-CDS-H-paniculata_contig4565:12101..131781691481259.8348184-CDS-H-paniculata_contig4565:12101..13178Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4565 12102..13178 -
1622930366.7459004-CDS-H-paniculata_contig4565:13991..142191622930366.7459004-CDS-H-paniculata_contig4565:13991..14219Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4565 13992..14219 -
1691481259.844269-CDS-H-paniculata_contig4565:13991..142191691481259.844269-CDS-H-paniculata_contig4565:13991..14219Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4565 13992..14219 -
1622930366.7677145-CDS-H-paniculata_contig4565:14873..149121622930366.7677145-CDS-H-paniculata_contig4565:14873..14912Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4565 14874..14912 -
1691481259.8535173-CDS-H-paniculata_contig4565:14873..149121691481259.8535173-CDS-H-paniculata_contig4565:14873..14912Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4565 14874..14912 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4565.11445.1

>prot_H-paniculata_contig4565.11445.1 ID=prot_H-paniculata_contig4565.11445.1|Name=mRNA_H-paniculata_contig4565.11445.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=448bp
MSMLETDAAEEKELQVAIAASREEVNGSSGWDDVHNEEDHLLAASGGTTV
ARTRSAGGGEGGGFLGGISEKDCFGNAGGGSGGDDDLQKAILLSMVEASL
PTAATGEAQKAEGVDEWACMACTFYNTPSSTRCDMCGEAQQQHLSSTLPK
VAAPAFRTTGTVVLKTGVASSDCLGVTNSGDSDFTARRGLNDLDLAREGG
DMSRKTKRCRVFADDDGDKGGLIDSPRVSILPVEHIGSHAKTSANKTKNR
ANAQGNLEEGAGEGVWEMATAQETLLLSRDGEDDEMSGNEAMVARGDDSP
PLRKQASVGGAPFEGTPSPSVTTAAAAVPASSPPSESPPRVPRQAPLRAR
YQLRSVLHHLGRHAFAGHYVTDVRDRGSGAFRGYGVHGKDGVLEVTGGDG
SAAGAGRGGGGGWKRHNDSLVSPVSEATALEGAARRSCYICFYSLVG*
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mRNA from alignment at H-paniculata_contig4565:11994..15005-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4565.11445.1 ID=mRNA_H-paniculata_contig4565.11445.1|Name=mRNA_H-paniculata_contig4565.11445.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3012bp|location=Sequence derived from alignment at H-paniculata_contig4565:11994..15005- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATGTATATGCGCGGAAGGGTGGGTGCAGAAGGGATGGGACGGAGGCGTT
CGTGCGCGGAGGAGTGGTTGGGGGATGTGCGGCGGGGAGGAGGATGTCGA
TGCTTGAAACGGACGCCGCAGAAGAGAAGGAGGTAGGTCGTGTTTTTTTG
TGTGTTATTTTCTTTGTGTAGGAGAAAACTTGCAGGATTTCTTTTTAATA
CATTTCCTTTTTCGGTTTTGTGTGTTGAAGAGTTATTTTGGTGTACATGG
CATGGTTTTATTGAATGCGAGTAGAGACGGTTTGATTGGTTGCTGAGCAC
AGACAGATGGGGCGTCCTTTCTCGGTTGATACTCTAGCGATTCGTTTCGA
TCGTGATGTTGTGTTGTGTGCTTTCGCTTCAGGAAGGGGGGAGCAGGAGT
ACCCACGTTGAGCTTATACAGCTGACTTCAAAGCTTGGTTGTGTACACTT
GCCAGCGAAATTATATTAAAATGGAGGGGCAGGGAGATGTGTCGCGCACA
AAATTAACTCTGTGCTCCGTTGTCGCAGGTCAGTTACGGTTGAGACAAGG
CGTCAGCACACGCTCTTATCGTTTATACAAACCTCCATGATGGAACACGA
TCATTCTTGCCGTTGCCAATATGACACGTTGTTGCTTCACCATGTTCTTC
TCTATCACCCGCACGCCCTACCCTCGCCCAAAAGCCATACGTTAATCCCA
GTCCTCTCTCGGGCCTTCCCTTGAAACTACCGCCCCTGTTGCATTTTTGT
CTTCATGTTTGCTCTGTTGATGATCGATCGTGGCAGCTGCAGGTCGCGAT
CGCCGCGTCGCGGGAAGAGGTGAACGGCTCCTCGGGGTGGGACGACGTAC
ACAACGAAGAGGACCATCTTCTCGCGGCTAGCGGGGGAACAACCGTAGCA
CGGACTCGGAGTGCCGGGGGAGGGGAGGGCGGTGGATTCCTTGGGGGCAT
TTCTGAGAAAGATTGTTTTGGGAATGCTGGAGGAGGTAGCGGAGGTGACG
ACGACTTGCAGAAGGTGAGGGATTGGGTGGTGGGCGGGTGGGTGGGTGTG
GTGTTTTAGGTGTGATGGCTCGATGCAGTCTTTGCGCTTTGCTCATTTCT
TGTGCGTTCGAGTCCGATCAGTCAATCAATTGTAACGATTCAGGGTATTG
TGTTCGGCGTATTGTGCCCATATATTGTCGATTCAAGTCAGCGTGGGGAA
GAGGAGTACTGTGTTTTTACTTTTTGTTCCTTTTTTTCTATTGGTCGAGT
GGTGGGTGTGGGTTCGAGGCGAGGTGTTTCGCCCTGGTTGGCTGGAAAAA
GGATGAAAGTGAGGTGCCTGTCTGCGCGAAACCTGTTGAGTTTGGTAAGC
ATGTCGTGTCGGCGCTTTGTAAAGTTAAAACTCCGTAGCTGTTGTGGTGC
CTGAAGAGAAACGATGTTTTAGAAAGCAGGACAGCACAAGGGTAGGTGTG
AGTATTTGGTACCATTCCTCCCCCTCTTCAAAAGATCGTGGCAACCGTTT
TTACGGTTGCCTTGCTTGGGGTGTGTTGACTTGCCACATCGGCGTTGAAC
GACTAAGTCATTGTGATGAAGAAAAAGACCGACCTAAAATGCGTCTCATT
TTTGTGATGATTGAAGCGCTTTGCTCCAGCAGGAAGTTACTGATTGAAAT
ATATAGCCATAATTATGGGCAAAAAAACACAGCATCACAGGTATTGTTGA
AATGACTACAGTAAACGTGGTATATAAAGGTTTTGAGAGCTCATCATATG
CACCAATATTTTTCGTGGGGTCCGGGCTTGTCATGTGCCCCCCCCCATGG
ATTGGTCATTCCCCTTCTTCCCCGTAGGCGATTCTCTTGAGCATGGTCGA
AGCTTCTTTGCCGACGGCTGCGACAGGAGAAGCACAAAAGGCCGAAGGCG
TGGACGAGTGGGCGTGCATGGCATGTACGTTCTACAACACCCCGTCGTCG
ACTCGCTGTGACATGTGTGGCGAAGCGCAGCAGCAGCACTTGTCATCAAC
GTTGCCTAAGGTTGCTGCGCCAGCTTTTAGGACCACTGGTACTGTTGTCC
TTAAAACTGGCGTTGCCTCGTCGGACTGCCTCGGCGTGACGAATAGCGGA
GACAGTGATTTTACAGCGCGGAGAGGTCTGAATGACTTGGATTTAGCCAG
AGAAGGAGGAGACATGAGCCGAAAAACAAAGAGATGCAGGGTTTTTGCAG
ATGATGATGGCGACAAAGGTGGTCTCATTGATTCACCCAGAGTTTCCATC
TTGCCCGTAGAACATATCGGAAGCCATGCCAAGACGAGCGCCAACAAGAC
CAAGAATCGGGCAAACGCTCAGGGTAATTTGGAGGAGGGCGCAGGGGAGG
GGGTCTGGGAGATGGCGACAGCACAGGAGACGTTACTGTTGTCGCGTGAC
GGAGAAGACGACGAAATGTCAGGGAATGAGGCGATGGTCGCGCGAGGTGA
CGACTCACCCCCGCTTCGAAAACAGGCGTCGGTGGGAGGAGCACCTTTCG
AAGGGACGCCTTCGCCTTCTGTTACTACCGCTGCTGCTGCTGTTCCAGCT
AGCAGCCCGCCGTCTGAGTCTCCCCCAAGGGTGCCGAGACAAGCCCCTCT
ACGTGCCCGGTACCAGCTGCGCAGTGTTTTACATCACCTAGGCCGCCACG
CTTTTGCAGGCCACTATGTCACCGATGTCAGAGACCGTGGTTCTGGTGCT
TTTCGTGGCTATGGTGTGCACGGGAAGGATGGTGTGCTAGAGGTGACGGG
GGGAGATGGGAGTGCGGCTGGTGCCGGTAGGGGCGGGGGCGGCGGGTGGA
AACGCCACAATGATAGCTTGGTTAGCCCGGTGTCTGAGGCCACGGCGCTC
GAGGGGGCTGCACGGCGAAGCTGCTACATTTGCTTCTACTCATTGGTAGG
GTAGTGGGGTTGGAGTTGGTGCTTGGTTCTCTGCTGGCAATCTAAGCGGT
TTAAGGTTTTGGTAGGTTGCCCCAGTACAGTTTTGGTTGAAATATGAACT
GTAGTGTGTGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig4565:11994..15005-

>mRNA_H-paniculata_contig4565.11445.1 ID=mRNA_H-paniculata_contig4565.11445.1|Name=mRNA_H-paniculata_contig4565.11445.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2688bp|location=Sequence derived from alignment at H-paniculata_contig4565:11994..15005- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGATGCTTGAAACGGACGCCGCAGAAGAGAAGGAGATGTCGATGCT
TGAAACGGACGCCGCAGAAGAGAAGGAGCTGCAGGTCGCGATCGCCGCGT
CGCGGGAAGAGGTGAACGGCTCCTCGGGGTGGGACGACGTACACAACGAA
GAGGACCATCTTCTCGCGGCTAGCGGGGGAACAACCGTAGCACGGACTCG
GAGTGCCGGGGGAGGGGAGGGCGGTGGATTCCTTGGGGGCATTTCTGAGA
AAGATTGTTTTGGGAATGCTGGAGGAGGTAGCGGAGGTGACGACGACTTG
CAGAAGCTGCAGGTCGCGATCGCCGCGTCGCGGGAAGAGGTGAACGGCTC
CTCGGGGTGGGACGACGTACACAACGAAGAGGACCATCTTCTCGCGGCTA
GCGGGGGAACAACCGTAGCACGGACTCGGAGTGCCGGGGGAGGGGAGGGC
GGTGGATTCCTTGGGGGCATTTCTGAGAAAGATTGTTTTGGGAATGCTGG
AGGAGGTAGCGGAGGTGACGACGACTTGCAGAAGGCGATTCTCTTGAGCA
TGGTCGAAGCTTCTTTGCCGACGGCTGCGACAGGAGAAGCACAAAAGGCC
GAAGGCGTGGACGAGTGGGCGTGCATGGCATGTACGTTCTACAACACCCC
GTCGTCGACTCGCTGTGACATGTGTGGCGAAGCGCAGCAGCAGCACTTGT
CATCAACGTTGCCTAAGGTTGCTGCGCCAGCTTTTAGGACCACTGGTACT
GTTGTCCTTAAAACTGGCGTTGCCTCGTCGGACTGCCTCGGCGTGACGAA
TAGCGGAGACAGTGATTTTACAGCGCGGAGAGGTCTGAATGACTTGGATT
TAGCCAGAGAAGGAGGAGACATGAGCCGAAAAACAAAGAGATGCAGGGTT
TTTGCAGATGATGATGGCGACAAAGGTGGTCTCATTGATTCACCCAGAGT
TTCCATCTTGCCCGTAGAACATATCGGAAGCCATGCCAAGACGAGCGCCA
ACAAGACCAAGAATCGGGCAAACGCTCAGGGTAATTTGGAGGAGGGCGCA
GGGGAGGGGGTCTGGGAGATGGCGACAGCACAGGAGACGTTACTGTTGTC
GCGTGACGGAGAAGACGACGAAATGTCAGGGAATGAGGCGATGGTCGCGC
GAGGTGACGACTCACCCCCGCTTCGAAAACAGGCGTCGGTGGGAGGAGCA
CCTTTCGAAGGGACGCCTTCGCCTTCTGTTACTACCGCTGCTGCTGCTGT
TCCAGCTAGCAGCCCGCCGTCTGAGTCTCCCCCAAGGGTGCCGAGACAAG
CCCCTCTACGTGCCCGGTACCAGCTGCGCAGTGTTTTACATCACCTAGGC
CGCCACGCTTTTGCAGGCCACTATGTCACCGATGTCAGAGACCGTGGTTC
TGGTGCTTTTCGTGGCTATGGTGTGCACGGGAAGGATGGTGTGCTAGAGG
TGACGGGGGGAGATGGGAGTGCGGCTGGTGCCGGTAGGGGCGGGGGCGGC
GGGTGGAAACGCCACAATGATAGCTTGGTTAGCCCGGTGTCTGAGGCCAC
GGCGCTCGAGGGGGCTGCACGGCGAAGCTGCTACATTTGCTTCTACTCAT
TGGTAGGGTAGGCGATTCTCTTGAGCATGGTCGAAGCTTCTTTGCCGACG
GCTGCGACAGGAGAAGCACAAAAGGCCGAAGGCGTGGACGAGTGGGCGTG
CATGGCATGTACGTTCTACAACACCCCGTCGTCGACTCGCTGTGACATGT
GTGGCGAAGCGCAGCAGCAGCACTTGTCATCAACGTTGCCTAAGGTTGCT
GCGCCAGCTTTTAGGACCACTGGTACTGTTGTCCTTAAAACTGGCGTTGC
CTCGTCGGACTGCCTCGGCGTGACGAATAGCGGAGACAGTGATTTTACAG
CGCGGAGAGGTCTGAATGACTTGGATTTAGCCAGAGAAGGAGGAGACATG
AGCCGAAAAACAAAGAGATGCAGGGTTTTTGCAGATGATGATGGCGACAA
AGGTGGTCTCATTGATTCACCCAGAGTTTCCATCTTGCCCGTAGAACATA
TCGGAAGCCATGCCAAGACGAGCGCCAACAAGACCAAGAATCGGGCAAAC
GCTCAGGGTAATTTGGAGGAGGGCGCAGGGGAGGGGGTCTGGGAGATGGC
GACAGCACAGGAGACGTTACTGTTGTCGCGTGACGGAGAAGACGACGAAA
TGTCAGGGAATGAGGCGATGGTCGCGCGAGGTGACGACTCACCCCCGCTT
CGAAAACAGGCGTCGGTGGGAGGAGCACCTTTCGAAGGGACGCCTTCGCC
TTCTGTTACTACCGCTGCTGCTGCTGTTCCAGCTAGCAGCCCGCCGTCTG
AGTCTCCCCCAAGGGTGCCGAGACAAGCCCCTCTACGTGCCCGGTACCAG
CTGCGCAGTGTTTTACATCACCTAGGCCGCCACGCTTTTGCAGGCCACTA
TGTCACCGATGTCAGAGACCGTGGTTCTGGTGCTTTTCGTGGCTATGGTG
TGCACGGGAAGGATGGTGTGCTAGAGGTGACGGGGGGAGATGGGAGTGCG
GCTGGTGCCGGTAGGGGCGGGGGCGGCGGGTGGAAACGCCACAATGATAG
CTTGGTTAGCCCGGTGTCTGAGGCCACGGCGCTCGAGGGGGCTGCACGGC
GAAGCTGCTACATTTGCTTCTACTCATTGGTAGGGTAG
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