prot_H-paniculata_contig4565.11445.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig4565.11445.1
Unique Nameprot_H-paniculata_contig4565.11445.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length448
Homology
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BLAST of mRNA_H-paniculata_contig4565.11445.1 vs. uniprot
Match: A0A6H5KST6_9PHAE (RanBP2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KST6_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 2.310e-23
Identity = 61/107 (57.01%), Postives = 72/107 (67.29%), Query Frame = 0 
Query:  340 RVPRQAPLRARYQLRSVLHHLGRHAFAGHYVTDVRDRGSGAFRGYGVHGKDGVLEVTGGDGSAAGXXXXXXXGWKRHNDSLVSPVSEATALEGAARRSCYICFYSLV 446
            RVPR+ PLRARY+LR +LHHLGRHAFAGHYVTDVR+  SG                 GG        XXX  GW R++DS+VSPV+EA AL G A+R+CY+CFYSLV
Sbjct:  193 RVPRKGPLRARYELRGILHHLGRHAFAGHYVTDVREERSGXXXXXXXXXXXXXXXSQGGKTERE---XXXGRGWSRYDDSVVSPVTEAEALGGEAQRTCYLCFYSLV 296
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BLAST of mRNA_H-paniculata_contig4565.11445.1 vs. uniprot
Match: D7G2P5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2P5_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 1.950e-22
Identity = 61/115 (53.04%), Postives = 75/115 (65.22%), Query Frame = 0 
Query:  340 RVPRQAPLRARYQLRSVLHHLGRHAFAGHYVTDVRDRGSGAFRGYGVHGKD--------GVLEVTGGDGSAAGXXXXXXXGWKRHNDSLVSPVSEATALEGAARRSCYICFYSLV 446
            RVPR+ PLRARY+LR +LHHLGRHAFAGHYVTDVR+ G G  R                G++   G  G    X      GWKR++DS+VSP++EA AL G A+R+CY+CFYSLV
Sbjct: 1375 RVPRKGPLRARYELRGILHHLGRHAFAGHYVTDVREEGGGGGRXXXXXXXXXXXXXXXXGIVGAAGSWGXXX-XREGGGRGWKRYDDSVVSPLTEAEALGGEAQRTCYLCFYSLV 1488
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BLAST of mRNA_H-paniculata_contig4565.11445.1 vs. uniprot
Match: A0A835YKZ9_9STRA (USP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKZ9_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 7.800e-12
Identity = 47/106 (44.34%), Postives = 57/106 (53.77%), Query Frame = 0 
Query:  340 RVPRQAPLRARYQLRSVLHHLGRHAFAGHYVTDVRDRGSGAFRGYGVHGKDGVLEVTGGDGSAAGXXXXXXXGWKRHNDSLVSPVSEATALEGAARRSCYICFYSL 445
            R PR APL+ARY+L +VLHHLG HAFAGHYV  VR  G GA R                              W+R++DS V  V+E  A+ GAAR +CY+ FY L
Sbjct: 1273 RPPRDAPLKARYRLAAVLHHLGPHAFAGHYVACVRS-GGGAAR------------------------------WRRYDDSEVRDVAERDAVGGAARATCYLAFYEL 1347
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4565.11445.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KST6_9PHAE2.310e-2357.01RanBP2-type domain-containing protein n=1 Tax=Ecto... [more]
D7G2P5_ECTSI1.950e-2253.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YKZ9_9STRA7.800e-1244.34USP domain-containing protein n=1 Tax=Tribonema mi... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003903Ubiquitin interacting motifSMARTSM00726uimcoord: 82..101
e-value: 9.3
score: 15.2
coord: 9..28
e-value: 34.0
score: 12.6
IPR001876Zinc finger, RanBP2-typeSMARTSM00547zf_4coord: 115..139
e-value: 5.9E-4
score: 29.1
IPR001876Zinc finger, RanBP2-typePROSITEPS01358ZF_RANBP2_1coord: 117..136
IPR001876Zinc finger, RanBP2-typePROSITEPS50199ZF_RANBP2_2coord: 111..142
score: 8.942
NoneNo IPR availableGENE3D2.20.28.140coord: 111..155
e-value: 1.0E-7
score: 33.6
IPR001394Peptidase C19, ubiquitin carboxyl-terminal hydrolasePFAMPF00443UCHcoord: 254..443
e-value: 1.9E-6
score: 27.6
IPR018200Ubiquitin specific protease, conserved sitePROSITEPS00973USP_2coord: 351..369
IPR036443Zinc finger, RanBP2-type superfamilySUPERFAMILY90209Ran binding protein zinc finger-likecoord: 115..138
IPR038765Papain-like cysteine peptidase superfamilySUPERFAMILY54001Cysteine proteinasescoord: 347..443

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4565contigH-paniculata_contig4565:12102..14912 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4565.11445.1mRNA_H-paniculata_contig4565.11445.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig4565 11994..15005 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig4565.11445.1 ID=prot_H-paniculata_contig4565.11445.1|Name=mRNA_H-paniculata_contig4565.11445.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=448bp
MSMLETDAAEEKELQVAIAASREEVNGSSGWDDVHNEEDHLLAASGGTTV
ARTRSAGGGEGGGFLGGISEKDCFGNAGGGSGGDDDLQKAILLSMVEASL
PTAATGEAQKAEGVDEWACMACTFYNTPSSTRCDMCGEAQQQHLSSTLPK
VAAPAFRTTGTVVLKTGVASSDCLGVTNSGDSDFTARRGLNDLDLAREGG
DMSRKTKRCRVFADDDGDKGGLIDSPRVSILPVEHIGSHAKTSANKTKNR
ANAQGNLEEGAGEGVWEMATAQETLLLSRDGEDDEMSGNEAMVARGDDSP
PLRKQASVGGAPFEGTPSPSVTTAAAAVPASSPPSESPPRVPRQAPLRAR
YQLRSVLHHLGRHAFAGHYVTDVRDRGSGAFRGYGVHGKDGVLEVTGGDG
SAAGAGRGGGGGWKRHNDSLVSPVSEATALEGAARRSCYICFYSLVG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003903UIM_dom
IPR001876Znf_RanBP2
IPR001394Peptidase_C19_UCH
IPR018200USP_CS
IPR036443Znf_RanBP2_sf
IPR038765Papain-like_cys_pep_sf