mRNA_H-paniculata_contig45640.11443.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig45640.11443.1
Unique NamemRNA_H-paniculata_contig45640.11443.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig45640.11443.1 vs. uniprot
Match: A0A6H5JD08_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD08_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 2.750e-31
Identity = 60/69 (86.96%), Postives = 64/69 (92.75%), Query Frame = 1 
Query:    1 GSLATAGFGTALGVIRTLSEKGLLEACFCTETRPYNQGARLTAYEFVAEGFPGKLIPDSAAAFLMAQGV 207
            GSLATAGFGTALGVIR L EKGLL +C+CTETRPYNQGARLTAYEFVA+G PG LIPDSAA+FLMAQGV
Sbjct:  175 GSLATAGFGTALGVIRALDEKGLLASCYCTETRPYNQGARLTAYEFVADGLPGTLIPDSAASFLMAQGV 243
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BLAST of mRNA_H-paniculata_contig45640.11443.1 vs. uniprot
Match: D7FTE3_ECTSI (Methylthioribose-1-phosphate isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTE3_ECTSI)

HSP 1 Score: 122 bits (306), Expect = 9.330e-31
Identity = 59/68 (86.76%), Postives = 63/68 (92.65%), Query Frame = 1 
Query:    1 GSLATAGFGTALGVIRTLSEKGLLEACFCTETRPYNQGARLTAYEFVAEGFPGKLIPDSAAAFLMAQG 204
            GSLATAGFGTALGVIR L EKGLL +C+CTETRPYNQGARLTAYEFVA+G PG LIPDSAA+FLMAQG
Sbjct:  175 GSLATAGFGTALGVIRALDEKGLLASCYCTETRPYNQGARLTAYEFVADGLPGTLIPDSAASFLMAQG 242
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BLAST of mRNA_H-paniculata_contig45640.11443.1 vs. uniprot
Match: A0A835YPH9_9STRA (Methylthioribose-1-phosphate isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPH9_9STRA)

HSP 1 Score: 103 bits (257), Expect = 3.970e-24
Identity = 51/68 (75.00%), Postives = 57/68 (83.82%), Query Frame = 1 
Query:    1 GSLATAGFGTALGVIRTLSEKGLLEACFCTETRPYNQGARLTAYEFVAEGFPGKLIPDSAAAFLMAQG 204
            GSLA AGFGTALGVIR L E+GLL+AC+ TETRPYNQGARLTA+E V +  PG LI DS A+FLMAQG
Sbjct:  181 GSLACAGFGTALGVIRALHEEGLLKACYATETRPYNQGARLTAFEMVEDNLPGTLITDSMASFLMAQG 248
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BLAST of mRNA_H-paniculata_contig45640.11443.1 vs. uniprot
Match: A0A8C4R1L2_EPTBU (Methylthioribose-1-phosphate isomerase n=1 Tax=Eptatretus burgeri TaxID=7764 RepID=A0A8C4R1L2_EPTBU)

HSP 1 Score: 101 bits (252), Expect = 4.310e-24
Identity = 49/67 (73.13%), Postives = 54/67 (80.60%), Query Frame = 1 
Query:    1 GSLATAGFGTALGVIRTLSEKGLLEACFCTETRPYNQGARLTAYEFVAEGFPGKLIPDSAAAFLMAQ 201
            G+LAT G+GTALGV+R L E G LE  +CTETRPYNQGARLTAYE VAEG PG L+ DSA AF MAQ
Sbjct:  168 GALATCGYGTALGVVRALHEAGTLERVYCTETRPYNQGARLTAYELVAEGIPGTLLADSAVAFAMAQ 234
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BLAST of mRNA_H-paniculata_contig45640.11443.1 vs. uniprot
Match: A0A8C4R244_EPTBU (Methylthioribose-1-phosphate isomerase 1 n=1 Tax=Eptatretus burgeri TaxID=7764 RepID=A0A8C4R244_EPTBU)

HSP 1 Score: 101 bits (252), Expect = 6.810e-24
Identity = 49/67 (73.13%), Postives = 54/67 (80.60%), Query Frame = 1 
Query:    1 GSLATAGFGTALGVIRTLSEKGLLEACFCTETRPYNQGARLTAYEFVAEGFPGKLIPDSAAAFLMAQ 201
            G+LAT G+GTALGV+R L E G LE  +CTETRPYNQGARLTAYE VAEG PG L+ DSA AF MAQ
Sbjct:  208 GALATCGYGTALGVVRALHEAGTLERVYCTETRPYNQGARLTAYELVAEGIPGTLLADSAVAFAMAQ 274
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BLAST of mRNA_H-paniculata_contig45640.11443.1 vs. uniprot
Match: A0A8J4YM75_CHIOP (Methylthioribose-1-phosphate isomerase n=1 Tax=Chionoecetes opilio TaxID=41210 RepID=A0A8J4YM75_CHIOP)

HSP 1 Score: 100 bits (248), Expect = 1.500e-23
Identity = 50/67 (74.63%), Postives = 54/67 (80.60%), Query Frame = 1 
Query:    1 GSLATAGFGTALGVIRTLSEKGLLEACFCTETRPYNQGARLTAYEFVAEGFPGKLIPDSAAAFLMAQ 201
            GSLATAG+GTALGV+R L E G LE  +CTETRPYNQGARLTAYE V EG PG LI DSAAA LM +
Sbjct:  168 GSLATAGYGTALGVVRALQEAGRLERVYCTETRPYNQGARLTAYELVCEGLPGTLICDSAAAALMRE 234
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BLAST of mRNA_H-paniculata_contig45640.11443.1 vs. uniprot
Match: A0A5B7ELZ2_PORTR (Methylthioribose-1-phosphate isomerase n=3 Tax=Portunidae TaxID=6757 RepID=A0A5B7ELZ2_PORTR)

HSP 1 Score: 98.6 bits (244), Expect = 5.890e-23
Identity = 49/67 (73.13%), Postives = 55/67 (82.09%), Query Frame = 1 
Query:    1 GSLATAGFGTALGVIRTLSEKGLLEACFCTETRPYNQGARLTAYEFVAEGFPGKLIPDSAAAFLMAQ 201
            GSLATAG+GTALGV+R L E G LE  +CTETRPYNQG+RLTA+E VAEG PG LI DSAAA LM +
Sbjct:  168 GSLATAGYGTALGVVRALQEAGRLEHVYCTETRPYNQGSRLTAFELVAEGLPGTLICDSAAAALMKE 234
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BLAST of mRNA_H-paniculata_contig45640.11443.1 vs. uniprot
Match: A0A150H0Q5_GONPE (Methylthioribose-1-phosphate isomerase n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150H0Q5_GONPE)

HSP 1 Score: 100 bits (248), Expect = 6.540e-23
Identity = 51/68 (75.00%), Postives = 54/68 (79.41%), Query Frame = 1 
Query:    1 GSLATAGFGTALGVIRTLSEKGLLEACFCTETRPYNQGARLTAYEFVAEGFPGKLIPDSAAAFLMAQG 204
            GSLATAGFGTALGVIR L E+GLLE  FCTETRPYNQGARLTA+E   +G P  LI DSAAA LM  G
Sbjct:  185 GSLATAGFGTALGVIRALHERGLLEHAFCTETRPYNQGARLTAFELAHDGLPATLICDSAAAALMGTG 252
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BLAST of mRNA_H-paniculata_contig45640.11443.1 vs. uniprot
Match: A0A7R9TVX8_9VIRI (Hypothetical protein (Fragment) n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9TVX8_9VIRI)

HSP 1 Score: 95.9 bits (237), Expect = 1.750e-22
Identity = 47/68 (69.12%), Postives = 54/68 (79.41%), Query Frame = 1 
Query:    1 GSLATAGFGTALGVIRTLSEKGLLEACFCTETRPYNQGARLTAYEFVAEGFPGKLIPDSAAAFLMAQG 204
            GSLATAG+GTALG IR L E+G+L+  +  ETRPYNQG RLTAYE VA+G PG LI DSAAA +MA G
Sbjct:   75 GSLATAGYGTALGCIRALHERGMLKRVYACETRPYNQGGRLTAYEIVADGLPGTLIADSAAAAMMASG 142
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BLAST of mRNA_H-paniculata_contig45640.11443.1 vs. uniprot
Match: A0A7J7PGQ8_9CHLO (Methylthioribose-1-phosphate isomerase n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PGQ8_9CHLO)

HSP 1 Score: 97.8 bits (242), Expect = 2.270e-22
Identity = 48/68 (70.59%), Postives = 55/68 (80.88%), Query Frame = 1 
Query:    1 GSLATAGFGTALGVIRTLSEKGLLEACFCTETRPYNQGARLTAYEFVAEGFPGKLIPDSAAAFLMAQG 204
            GSLATAG+GTALGV+R L E+G LE C+  ETRPYNQGARLTA+E V +G P  L+ DSAAA LMAQG
Sbjct:  184 GSLATAGYGTALGVVRALHEQGKLERCYACETRPYNQGARLTAFELVHDGLPATLLVDSAAAALMAQG 251
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig45640.11443.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JD08_9PHAE2.750e-3186.96Reverse transcriptase domain-containing protein n=... [more]
D7FTE3_ECTSI9.330e-3186.76Methylthioribose-1-phosphate isomerase n=1 Tax=Ect... [more]
A0A835YPH9_9STRA3.970e-2475.00Methylthioribose-1-phosphate isomerase n=1 Tax=Tri... [more]
A0A8C4R1L2_EPTBU4.310e-2473.13Methylthioribose-1-phosphate isomerase n=1 Tax=Ept... [more]
A0A8C4R244_EPTBU6.810e-2473.13Methylthioribose-1-phosphate isomerase 1 n=1 Tax=E... [more]
A0A8J4YM75_CHIOP1.500e-2374.63Methylthioribose-1-phosphate isomerase n=1 Tax=Chi... [more]
A0A5B7ELZ2_PORTR5.890e-2373.13Methylthioribose-1-phosphate isomerase n=3 Tax=Por... [more]
A0A150H0Q5_GONPE6.540e-2375.00Methylthioribose-1-phosphate isomerase n=1 Tax=Gon... [more]
A0A7R9TVX8_9VIRI1.750e-2269.12Hypothetical protein (Fragment) n=1 Tax=Prasinoder... [more]
A0A7J7PGQ8_9CHLO2.270e-2270.59Methylthioribose-1-phosphate isomerase n=1 Tax=Sce... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig45640contigH-paniculata_contig45640:260..1031 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score123.6
Seed ortholog evalue3.7e-26
Seed eggNOG ortholog2880.D7FTE3
Preferred nameMRI1
KEGG rclassRC00002,RC00078,RC01151
KEGG koko:K00899,ko:K03239,ko:K08963,ko:K20047
KEGG ReactionR04143,R04420
KEGG Pathwayko00270,ko01100,ko03013,map00270,map01100,map03013
KEGG ModuleM00034
Hectar predicted targeting categoryother localisation
GOsGO:0000096,GO:0000097,GO:0000166,GO:0000302,GO:0001650,GO:0001882,GO:0001883,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0003824,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0005851,GO:0005911,GO:0006082,GO:0006412,GO:0006413,GO:0006518,GO:0006520,GO:0006555,GO:0006790,GO:0006807,GO:0006950,GO:0006979,GO:0008135,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009059,GO:0009066,GO:0009067,GO:0009086,GO:0009506,GO:0009719,GO:0009723,GO:0009725,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010039,GO:0010467,GO:0016053,GO:0016853,GO:0016860,GO:0016861,GO:0017076,GO:0017144,GO:0019001,GO:0019509,GO:0019538,GO:0019752,GO:0030054,GO:0031974,GO:0031981,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032870,GO:0032991,GO:0033554,GO:0034599,GO:0034614,GO:0034641,GO:0034645,GO:0035639,GO:0035690,GO:0036094,GO:0042221,GO:0042493,GO:0042802,GO:0043043,GO:0043094,GO:0043102,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0046394,GO:0046523,GO:0050896,GO:0051716,GO:0055044,GO:0070013,GO:0070887,GO:0071241,GO:0071248,GO:0071265,GO:0071267,GO:0071281,GO:0071310,GO:0071369,GO:0071495,GO:0071704,GO:0071731,GO:0071732,GO:0097159,GO:0097366,GO:0097367,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902170
EggNOG free text desc.S-methyl-5-thioribose-1-phosphate isomerase activity
EggNOG OGsCOG0182@1,KOG1468@2759
Ec32 ortholog descriptioneukaryotic translation initiation factor 2B family protein / eIF-2B family protein
Ec32 orthologEc-21_001010.1
EC2.7.1.100,5.3.1.23
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03012,ko04131
Exons2
Model size219
Cds size219
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930366.5664852-CDS-H-paniculata_contig45640:259..3671622930366.5664852-CDS-H-paniculata_contig45640:259..367Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45640 260..367 -
1691481259.780439-CDS-H-paniculata_contig45640:259..3671691481259.780439-CDS-H-paniculata_contig45640:259..367Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45640 260..367 -
1622930366.588466-CDS-H-paniculata_contig45640:920..10311622930366.588466-CDS-H-paniculata_contig45640:920..1031Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45640 921..1031 -
1691481259.7957404-CDS-H-paniculata_contig45640:920..10311691481259.7957404-CDS-H-paniculata_contig45640:920..1031Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45640 921..1031 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig45640.11443.1prot_H-paniculata_contig45640.11443.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig45640 260..1031 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig45640.11443.1

>prot_H-paniculata_contig45640.11443.1 ID=prot_H-paniculata_contig45640.11443.1|Name=mRNA_H-paniculata_contig45640.11443.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=73bp
GSLATAGFGTALGVIRTLSEKGLLEACFCTETRPYNQGARLTAYEFVAEG
FPGKLIPDSAAAFLMAQGVFRE*
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mRNA from alignment at H-paniculata_contig45640:260..1031-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig45640.11443.1 ID=mRNA_H-paniculata_contig45640.11443.1|Name=mRNA_H-paniculata_contig45640.11443.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=772bp|location=Sequence derived from alignment at H-paniculata_contig45640:260..1031- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCTCTTTAGCTACAGCCGGATTCGGGACTGCGCTAGGTGTAATCCGTAC
CCTCTCGGAAAAAGGGCTGCTCGAGGCATGTTTTTGCACCGAAACACGCC
CTTACAACCAGGTAGCACGGTGGGAACCCCGAAGTTTCAAGCCGGGTCCT
TGAATGCAAGCAACAGAACACGGCGAGAGGGAGGGGGATACCTCTTTTTG
TACCATCCCATTGTCTCCGTTTATCTCTTTAGATTGTGGGCTCTCTGATG
CAAGAAACCATTAATAGGCACGAACACGGGTTACAGTGTGGCGCTTGTTG
TGTATTTTGCTCTGTGTGCCAACTCGCATTTTCCCTAGCTAACAGTAAGG
CAAGGCTGCGCTCGGTGCAATTTCGTAATGTCGTGTGCATTTTTTTTTCC
TTGCTCCACGGATAAGGATTCGCTGCCCACGTGGGCGAAGTTTTTTTTTG
CAAAAGTTACCTGGATGAGAGATTGATGAAGCTGTTCCGAAACGACGAGG
ATATACGACCTTGGTGATTTGAAGTAGTTGGTGATATTTCGTGTCTTGGG
GTGTCCCGTCGGGTTCTACTTGTTGCCGATCGTGCTTGAGTGTCTGTGTT
ACTCTCTAATCGGAACAACATGAATGTGTGTGTCTGTGTTGCGCATTTGC
TGTTGTTCTTGCAGGGGGCTCGTCTGACTGCCTACGAGTTCGTGGCCGAA
GGTTTTCCGGGCAAGCTCATACCCGACTCTGCAGCGGCGTTCCTCATGGC
GCAAGGTGTGTTTCGGGAATAG
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Coding sequence (CDS) from alignment at H-paniculata_contig45640:260..1031-

>mRNA_H-paniculata_contig45640.11443.1 ID=mRNA_H-paniculata_contig45640.11443.1|Name=mRNA_H-paniculata_contig45640.11443.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=438bp|location=Sequence derived from alignment at H-paniculata_contig45640:260..1031- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCTCTTTAGCTACAGCCGGATTCGGGACTGCGCTAGGTGTAATCCGTAC
CCTCTCGGAAAAAGGGCTGCTCGAGGCATGTTTTTGCACCGAAACACGCC
CTTACAACCAGGGCTCTTTAGCTACAGCCGGATTCGGGACTGCGCTAGGT
GTAATCCGTACCCTCTCGGAAAAAGGGCTGCTCGAGGCATGTTTTTGCAC
CGAAACACGCCCTTACAACCAGGGGGCTCGTCTGACTGCCTACGAGTTCG
TGGCCGAAGGTTTTCCGGGCAAGCTCATACCCGACTCTGCAGCGGCGTTC
CTCATGGCGCAAGGTGTGTTTCGGGAATAGGGGGCTCGTCTGACTGCCTA
CGAGTTCGTGGCCGAAGGTTTTCCGGGCAAGCTCATACCCGACTCTGCAG
CGGCGTTCCTCATGGCGCAAGGTGTGTTTCGGGAATAG
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