mRNA_H-paniculata_contig45604.11437.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig45604.11437.1
Unique NamemRNA_H-paniculata_contig45604.11437.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig45604.11437.1 vs. uniprot
Match: D8LIN5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIN5_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 7.460e-26
Identity = 54/78 (69.23%), Postives = 62/78 (79.49%), Query Frame = 1 
Query:    1 QAFQQLQQAFVAFMLTILVHFVVGIQPILLLQLFSTPYNFVENRLFRKHVLGLKPGYRVWGERLEAELRPEQISKAVE 234
            + FQQLQQ FVA MLTIL HFV+G +PILLLQ+FS PY+F ENRL RK VLGLKPGYRVWGER E EL  +++ K  E
Sbjct:  101 EVFQQLQQQFVALMLTILAHFVLGFRPILLLQIFSAPYHFSENRLLRKLVLGLKPGYRVWGERFEGELEGDKVKKEEE 178
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BLAST of mRNA_H-paniculata_contig45604.11437.1 vs. uniprot
Match: A0A6H5K295_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K295_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 7.200e-21
Identity = 46/65 (70.77%), Postives = 52/65 (80.00%), Query Frame = 1 
Query:   40 MLTILVHFVVGIQPILLLQLFSTPYNFVENRLFRKHVLGLKPGYRVWGERLEAELRPEQISKAVE 234
            MLTIL HFV+G +PILLLQ+FSTPY+F ENRL RK VLGLKPGYRVWGER+E EL   +I    E
Sbjct:    1 MLTILAHFVLGFRPILLLQIFSTPYHFSENRLLRKFVLGLKPGYRVWGERIEGELEGGKIKNEEE 65
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig45604.11437.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LIN5_ECTSI7.460e-2669.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K295_9PHAE7.200e-2170.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig45604contigH-paniculata_contig45604:1162..1395 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score108.6
Seed ortholog evalue1.3e-21
Seed eggNOG ortholog2880.D8LIN5
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Phosphate transport (Pho88)
EggNOG OGs2CMQ9@1,2QRCY@2759
Ec32 ortholog descriptionInorganic phosphate transporter Pho88
Ec32 orthologEc-11_004540.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size234
Cds size234
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930365.8840714-CDS-H-paniculata_contig45604:1161..13951622930365.8840714-CDS-H-paniculata_contig45604:1161..1395Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45604 1162..1395 +
1691481259.4381979-CDS-H-paniculata_contig45604:1161..13951691481259.4381979-CDS-H-paniculata_contig45604:1161..1395Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45604 1162..1395 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig45604.11437.1prot_H-paniculata_contig45604.11437.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig45604 1162..1395 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig45604.11437.1

>prot_H-paniculata_contig45604.11437.1 ID=prot_H-paniculata_contig45604.11437.1|Name=mRNA_H-paniculata_contig45604.11437.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=78bp
QAFQQLQQAFVAFMLTILVHFVVGIQPILLLQLFSTPYNFVENRLFRKHV
LGLKPGYRVWGERLEAELRPEQISKAVE
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mRNA from alignment at H-paniculata_contig45604:1162..1395+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig45604.11437.1 ID=mRNA_H-paniculata_contig45604.11437.1|Name=mRNA_H-paniculata_contig45604.11437.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=234bp|location=Sequence derived from alignment at H-paniculata_contig45604:1162..1395+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGCGTTCCAACAGCTTCAGCAGGCGTTCGTAGCCTTCATGCTCACGAT
CCTGGTACACTTCGTCGTAGGCATTCAACCCATCTTGCTGCTCCAGCTCT
TCTCGACCCCCTACAACTTCGTCGAAAACCGCTTGTTCCGCAAGCATGTC
CTGGGGCTCAAGCCCGGCTATCGCGTGTGGGGCGAGAGGCTTGAGGCCGA
ATTGCGGCCAGAGCAAATCTCGAAGGCTGTGGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig45604:1162..1395+

>mRNA_H-paniculata_contig45604.11437.1 ID=mRNA_H-paniculata_contig45604.11437.1|Name=mRNA_H-paniculata_contig45604.11437.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=468bp|location=Sequence derived from alignment at H-paniculata_contig45604:1162..1395+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGCGTTCCAACAGCTTCAGCAGGCGTTCGTAGCCTTCATGCTCACGAT
CCTGGTACACTTCGTCGTAGGCATTCAACCCATCTTGCTGCTCCAGCTCT
TCTCGACCCCCTACAACTTCGTCGAAAACCGCTTGTTCCGCAAGCATGTC
CTGGGGCTCAAGCCCGGCTATCGCGTGTGGGGCGAGAGGCTTGAGGCCGA
ATTGCGGCCAGAGCAAATCTCGAAGGCTGTGGAGCAGGCGTTCCAACAGC
TTCAGCAGGCGTTCGTAGCCTTCATGCTCACGATCCTGGTACACTTCGTC
GTAGGCATTCAACCCATCTTGCTGCTCCAGCTCTTCTCGACCCCCTACAA
CTTCGTCGAAAACCGCTTGTTCCGCAAGCATGTCCTGGGGCTCAAGCCCG
GCTATCGCGTGTGGGGCGAGAGGCTTGAGGCCGAATTGCGGCCAGAGCAA
ATCTCGAAGGCTGTGGAG
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