prot_H-paniculata_contig4553.11424.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig4553.11424.1
Unique Nameprot_H-paniculata_contig4553.11424.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length79
Homology
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BLAST of mRNA_H-paniculata_contig4553.11424.1 vs. uniprot
Match: D8LGL5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGL5_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 5.130e-39
Identity = 59/78 (75.64%), Postives = 66/78 (84.62%), Query Frame = 0 
Query:    1 MAIAMKHKLLIFLMILLGFAAFGGWHSEDEVYAYWAMWTVPIIFLGIWLLFDCIFVDDKSFIFDHDYENWARRNDPMY 78
            MAI  KHKLLIF +I+L F AFG WHSED    +WAMWTVPIIFL +WLLFDCIFVDDK+F+FDHDYENW+RR DPMY
Sbjct:    1 MAIQTKHKLLIFWIIMLSFIAFGAWHSEDMETPFWAMWTVPIIFLFVWLLFDCIFVDDKAFVFDHDYENWSRRMDPMY 78
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BLAST of mRNA_H-paniculata_contig4553.11424.1 vs. uniprot
Match: A0A836CKG6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKG6_9STRA)

HSP 1 Score: 101 bits (252), Expect = 1.230e-26
Identity = 48/80 (60.00%), Postives = 59/80 (73.75%), Query Frame = 0 
Query:    1 MAIAMKHKLLIFLMILLGFAAFGGWHS-EDEVYAYWAMWTVPIIFLGIWLLFDCIFV-DDKSFIFDHDYENWARRNDPMY 78
            MA+  +HKL+  L+I     AF  W++ +D   A+WAMWTVPI+FL  WLL DC+FV DDK+FIFDHDYENW RR DPMY
Sbjct:    1 MAVYGRHKLITLLIIXXXXVAFAAWNNTDDNNTAWWAMWTVPIMFLSFWLLMDCMFVSDDKAFIFDHDYENWRRRIDPMY 80
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BLAST of mRNA_H-paniculata_contig4553.11424.1 vs. uniprot
Match: A0A6U4EHE2_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4EHE2_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 1.370e-12
Identity = 32/77 (41.56%), Postives = 45/77 (58.44%), Query Frame = 0 
Query:    2 AIAMKHKLLIFLMILLGFAAFGGWHSEDEVYAYWAMWTVPIIFLGIWLLFDCIFVDDKSFIFDHDYENWARRNDPMY 78
            AI+++H + +  ++   F AFG +  E E    W  W V I F  I LLFDC+F  D +FI+D D ENW R+ DP +
Sbjct:   67 AISLRHWIWVVFIVAFSFIAFGAYSDELENQV-WLAWIVGITFAAIILLFDCLFTQDNTFIYDPDPENWRRQTDPRF 142
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4553.11424.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LGL5_ECTSI5.130e-3975.64Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CKG6_9STRA1.230e-2660.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6U4EHE2_9STRA1.370e-1241.56Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 20..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 9..19
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 52..78
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..8
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 33..51
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 24..32
NoneNo IPR availableSIGNALP_EUKSignalP-TMSignalP-TMcoord: 1..20
score: 0.57
NoneNo IPR availableTMHMMTMhelixcoord: 31..51
NoneNo IPR availableTMHMMTMhelixcoord: 9..26

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4553contigH-paniculata_contig4553:6722..8537 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4553.11424.1mRNA_H-paniculata_contig4553.11424.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig4553 5931..8537 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig4553.11424.1 ID=prot_H-paniculata_contig4553.11424.1|Name=mRNA_H-paniculata_contig4553.11424.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=79bp
MAIAMKHKLLIFLMILLGFAAFGGWHSEDEVYAYWAMWTVPIIFLGIWLL
FDCIFVDDKSFIFDHDYENWARRNDPMY*
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