mRNA_H-paniculata_contig4553.11424.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4553.11424.1
Unique NamemRNA_H-paniculata_contig4553.11424.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4553.11424.1 vs. uniprot
Match: D8LGL5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGL5_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 1.220e-35
Identity = 59/78 (75.64%), Postives = 66/78 (84.62%), Query Frame = 1 
Query:    1 MAIAMKHKLLIFLMILLGFAAFGGWHSEDEVYAYWAMWTVPIIFLGIWLLFDCIFVDDKSFIFDHDYENWARRNDPMY 234
            MAI  KHKLLIF +I+L F AFG WHSED    +WAMWTVPIIFL +WLLFDCIFVDDK+F+FDHDYENW+RR DPMY
Sbjct:    1 MAIQTKHKLLIFWIIMLSFIAFGAWHSEDMETPFWAMWTVPIIFLFVWLLFDCIFVDDKAFVFDHDYENWSRRMDPMY 78
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BLAST of mRNA_H-paniculata_contig4553.11424.1 vs. uniprot
Match: A0A836CKG6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKG6_9STRA)

HSP 1 Score: 102 bits (254), Expect = 1.060e-23
Identity = 48/80 (60.00%), Postives = 59/80 (73.75%), Query Frame = 1 
Query:    1 MAIAMKHKLLIFLMILLGFAAFGGWHS-EDEVYAYWAMWTVPIIFLGIWLLFDCIFV-DDKSFIFDHDYENWARRNDPMY 234
            MA+  +HKL+  L+I     AF  W++ +D   A+WAMWTVPI+FL  WLL DC+FV DDK+FIFDHDYENW RR DPMY
Sbjct:    1 MAVYGRHKLITLLIIXXXXVAFAAWNNTDDNNTAWWAMWTVPIMFLSFWLLMDCMFVSDDKAFIFDHDYENWRRRIDPMY 80
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BLAST of mRNA_H-paniculata_contig4553.11424.1 vs. uniprot
Match: A0A6U4EHE2_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4EHE2_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 1.730e-10
Identity = 32/77 (41.56%), Postives = 45/77 (58.44%), Query Frame = 1 
Query:    4 AIAMKHKLLIFLMILLGFAAFGGWHSEDEVYAYWAMWTVPIIFLGIWLLFDCIFVDDKSFIFDHDYENWARRNDPMY 234
            AI+++H + +  ++   F AFG +  E E    W  W V I F  I LLFDC+F  D +FI+D D ENW R+ DP +
Sbjct:   67 AISLRHWIWVVFIVAFSFIAFGAYSDELENQV-WLAWIVGITFAAIILLFDCLFTQDNTFIYDPDPENWRRQTDPRF 142
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4553.11424.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LGL5_ECTSI1.220e-3575.64Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CKG6_9STRA1.060e-2360.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6U4EHE2_9STRA1.730e-1041.56Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4553contigH-paniculata_contig4553:5931..8537 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score133.3
Seed ortholog evalue5.1e-29
Seed eggNOG ortholog2880.D8LGL5
Hectar predicted targeting categorysignal peptide
EggNOG OGs2E174@1,2S8JA@2759
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-10_002660.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size1028
Cds size237
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4553.11424.1prot_H-paniculata_contig4553.11424.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4553 6722..8537 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930364.0045724-UTR-H-paniculata_contig4553:5930..67211622930364.0045724-UTR-H-paniculata_contig4553:5930..6721Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4553 5931..6721 -
1691481258.6788735-UTR-H-paniculata_contig4553:5930..67211691481258.6788735-UTR-H-paniculata_contig4553:5930..6721Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4553 5931..6721 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930364.0162916-CDS-H-paniculata_contig4553:6721..67541622930364.0162916-CDS-H-paniculata_contig4553:6721..6754Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4553 6722..6754 -
1691481258.6928885-CDS-H-paniculata_contig4553:6721..67541691481258.6928885-CDS-H-paniculata_contig4553:6721..6754Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4553 6722..6754 -
1622930364.0295353-CDS-H-paniculata_contig4553:8333..85371622930364.0295353-CDS-H-paniculata_contig4553:8333..8537Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4553 8334..8537 -
1691481258.7074552-CDS-H-paniculata_contig4553:8333..85371691481258.7074552-CDS-H-paniculata_contig4553:8333..8537Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4553 8334..8537 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4553.11424.1

>prot_H-paniculata_contig4553.11424.1 ID=prot_H-paniculata_contig4553.11424.1|Name=mRNA_H-paniculata_contig4553.11424.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=79bp
MAIAMKHKLLIFLMILLGFAAFGGWHSEDEVYAYWAMWTVPIIFLGIWLL
FDCIFVDDKSFIFDHDYENWARRNDPMY*
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mRNA from alignment at H-paniculata_contig4553:5931..8537-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4553.11424.1 ID=mRNA_H-paniculata_contig4553.11424.1|Name=mRNA_H-paniculata_contig4553.11424.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2607bp|location=Sequence derived from alignment at H-paniculata_contig4553:5931..8537- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGATCGCTATGAAGCACAAGTTATTGATATTCCTGATGATCTTGTT
GGGGTTCGCGGCGTTCGGGGGGTGGCACAGCGAGGACGAGGTTTATGCGT
ACTGGGCGATGTGGACAGTGCCCATTATCTTCCTGGGAATATGGCTGCTC
TTCGACTGCATATTTGTGGACGACAAGTCCTTCATCTTTGATCATGACTA
TGAGGTAATGGACTGGAGGGTAGTAATCACACAAGCCTGCGATAGTGATC
ATGTCTTGTCCTGCCTTGTCGATAGGACTGGAGTTTCTGCTTTTCCCTTT
CTGCATGAGTGTTGCATTTTGGCGACTCTTGTTCTCCGTTTTGGTGGGCG
GAGGGTTCTAGCTTTTCGTCACGTTCTGGAGCTGCATACACTCCCAAGTG
CCGCGGGTCCTGTGCTTCACTACGTTTCCTTAGAATACCGTCCATATACC
CATCATTCCTGGGTACGAAGCAGAGAGTAACTGCACTGATTGCTCTGTTG
GTGTGCTGGCATTGGCAAGGAATAGTTTTATCGTTTGATGGGCCGCGTGC
TCTTAGCTATATTACGGCACAACAGCACATACGTAACATTTCCAGAGGGC
TCCGACCTAGCTGGGTCCCTGAACATACTTGACGTTCAATTGCAATTTCC
TAGCGAGTTGTATTTATACCTGGGAAGGGAATCCCTTCTCTTACCTAAGC
CGCCGCACGGTACAACGGGCCAACGAAGAAGTGCAGAAATGTTCGATACT
TGTAGTGGGCATAAGCGACAAGGAATTAAAGTGTAACCGATGACAATCTG
TGCATTAGGCGGTAAAAGTCAGGTCCTTGATGTGCTCTGCGATTATGTTC
ATACGGGGCAAAAACGATCAAGAAAAGCACAGCTTATTAATTAGACGGGG
GGTGAGCACAGGGTAGTTGCGTGTGGCGTACAGATCTGCGGTTGCATCGG
CTTACTCCATGCCGTCGAGGTCGTGGAGAGTAGCAACCCGGAGAACAATC
CCTTGTTCACTCTTCGGTAAGGAAAGAAATATCCCCAGCCAAGCATGACT
AGTAAAATAGCATATTGCTTTTTTGTCGTTTGGCATTATCATTTCATGCT
CGAGGAGCAGGCCCTGATAAAGAAACGATAAAGTCCCAACAGCACCTACT
GTGTCTGAAGCACCATGCAGAGGGCGTTGGTGTTATACTTCGTAATGTAT
CGTGAAGGGTGCCGAGATATCGTTGGCACGGTATTATATTGTTCCATCTC
TCTTTGGCGCGTTAGAGTTGGTCTAGTTTCCTGTGGCTGTCCTTCTACAT
GATCGTTATTTATTTCCCAAAGGTCGGGGTAGATTGAGTTGAGGATGTGA
AGACCCTCGAGGTAACGTCCAAGCTGTCATTTTAGTTGCATGCTGATGTT
TCAGAGGCTTTCATGTTCTGTAACGTTTTAAAACGTGTTTTTCTGTGGAC
GCTAGCGCACGTCCATCTGCATGTCTCAACGAGATGTTTACAACAGCGCA
AATTCTGGCACGAGCAAAATATGTTCATGGTGGTGACTCGGGGTAGTCGC
TGTCAGTGTGGTCTAATGTGGCGGTACATACGTGAGGATTATAACGGGGG
GGTTGTGACCCACTTGCGGCCTATCTCGGTGATGGGCCACCCATTTACTC
AGTTCTTGTGTATAAGCAAACACTTTTACATTATGTCTTCATCGTGCTCC
TAGCCAATCCCCACATTGATCAACGCCATTAATTAATCCCTGCTGTTTGT
CGCTTGTCGTTGCCGTTTTGTCCTGTACTGCAGAACTGGGCGAGGAGAAA
TGATCCTATGTATTGACCCAGGAGAATGAAAGAATGGATTTGATAGTTTT
GCTGGTTCTTCGTTGGCTATTGGAGGGGAGGGGCCACTGACACCTCGAGT
AAACCTTGGACTAGGACGTAGCAGTTATGTTTTTATTCACGCCACGGAGT
GAAATTATTTCCGCATGTTAGTAGCTGATGGGGGGAGTGGGAGTGGGGAG
GAGGTTTGGTACCGTGGAAGGAACGGAGCCTAGCCTGTGGCGCGGAGATT
TCGAGTAGCGCTTGGATTTGGACTTGTGGACTGTGTTGAAATTGTTGTAA
TTCGTAAAGAGATCATTGGCTGGGTGCTGGGTGTATGGCATGGCGAGCAG
TCTCCACAGAGTTTGAGCTTGGAAGACCTCTCACGTATAGTAGCGAACAC
GAAGGGTATCAAAGATCAAAGATCAGCCATGCTTCCCTTTTTTGCTTCTT
GTTGGACATGAGGAAAGCCGGGATAGTTACCGTCCTCCTCTAAACCGTAA
AATGCGGGACAGACGCCATATGCCTCTTTAGATAACCCCATTTTGTTCCA
CGACGGGCCCTTGCATCGTTTGAAAGAACTTTTGTAATTTTGTCAATCAC
GCTACCTTTTTCGTTTGGGACATGCGGTCCGTGATGTGTAAGCGGTCCGG
CCGAGAACATGTGAGCATGTTGATGTCTGGGTATTGTTTCATTTCTGAAT
ATTTAAATATTGCGTAACGTTCTCCAAGTGTTCATGCCCGCCGGCTCAAT
TCGGTGCACATGGTACGCTGAACGCTGAACGCAGCTACTGTTGATTGACG
TCCTCCG
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Coding sequence (CDS) from alignment at H-paniculata_contig4553:5931..8537-

>mRNA_H-paniculata_contig4553.11424.1 ID=mRNA_H-paniculata_contig4553.11424.1|Name=mRNA_H-paniculata_contig4553.11424.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=474bp|location=Sequence derived from alignment at H-paniculata_contig4553:5931..8537- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGATCGCTATGAAGCACAAGTTATTGATATTCCTGATGATCTTGTT
GGGGTTCGCGGCGTTCGGGGGGTGGCACAGCGAGGACGAGGTTTATGCGT
ACTGGGCGATGTGGACAGTGCCCATTATCTTCCTGGGAATATGGCTGCTC
TTCGACTGCATATTTGTGGACGACAAGTCCTTCATCTTTGATCATGACTA
TGAGATGGCGATCGCTATGAAGCACAAGTTATTGATATTCCTGATGATCT
TGTTGGGGTTCGCGGCGTTCGGGGGGTGGCACAGCGAGGACGAGGTTTAT
GCGTACTGGGCGATGTGGACAGTGCCCATTATCTTCCTGGGAATATGGCT
GCTCTTCGACTGCATATTTGTGGACGACAAGTCCTTCATCTTTGATCATG
ACTATGAGAACTGGGCGAGGAGAAATGATCCTATGTATTGAAACTGGGCG
AGGAGAAATGATCCTATGTATTGA
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