mRNA_H-paniculata_contig454.11404.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig454.11404.1 vs. uniprot
Match: A0A6H5KZE6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZE6_9PHAE) HSP 1 Score: 107 bits (268), Expect = 3.320e-25 Identity = 68/173 (39.31%), Postives = 90/173 (52.02%), Query Frame = 1
Query: 1 TWNVRIMTEKRANGIGH-AEDLMLSAKLHECDVVGLQEIRRDGRVSFSTPAAGYTIYCSEHNPADEGKSEQLGVGLAMRESIVRPAGPGGIEVECISTRLMEVRIALTSNCVVTCVVGYTPVETAAT------QDKDQFWATLHVTAAQVSAKESFVVMMYANPRTGKREVTC 498
T+NV + N IGH +M CDV+GLQE RR+G+ S + GY I S + K GVG+A++E+I G G VECIS RLM+VR+ + C VT VVGY P ET + KD FW L +V +++ VV+M AN RTG+R C
Sbjct: 13 TFNVHTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHD--GYVIIWSGARAGTKDKRGGHGVGIAIKEAIWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRSTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMGANARTGRRRDGC 183
BLAST of mRNA_H-paniculata_contig454.11404.1 vs. uniprot
Match: A0A6H5JQH5_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQH5_9PHAE) HSP 1 Score: 110 bits (274), Expect = 8.020e-25 Identity = 69/173 (39.88%), Postives = 92/173 (53.18%), Query Frame = 1
Query: 1 TWNVRIMTEKRANGIGH-AEDLMLSAKLHECDVVGLQEIRRDGRVSFSTPAAGYTIYCSEHNPADEGKSEQLGVGLAMRESIVRPAGPGGIEVECISTRLMEVRIALTSNCVVTCVVGYTPVETAAT------QDKDQFWATLHVTAAQVSAKESFVVMMYANPRTGKREVTC 498
T+NVR + N IGH +M +CDV+GLQE RR G+ + + GY I S + K GVG+A++E++ G GG VECIS RLM+VR+ + C VT VVGY P ETA KD FW L +V +++ VV+M AN RTG+R C
Sbjct: 94 TFNVRTLAYSGRNPIGHNVMTVMQICAATDCDVIGLQETRRAGQGAITHD--GYVIIWSGARAGTKDKRGVHGVGIAIKETMWDSVGEGGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDGC 264
BLAST of mRNA_H-paniculata_contig454.11404.1 vs. uniprot
Match: A0A6H5JVN7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVN7_9PHAE) HSP 1 Score: 109 bits (272), Expect = 1.440e-24 Identity = 67/173 (38.73%), Postives = 93/173 (53.76%), Query Frame = 1
Query: 1 TWNVRIMTEKRANGIGH-AEDLMLSAKLHECDVVGLQEIRRDGRVSFSTPAAGYTIYCSEHNPADEGKSEQLGVGLAMRESIVRPAGPGGIEVECISTRLMEVRIALTSNCVVTCVVGYTPVETAA------TQDKDQFWATLHVTAAQVSAKESFVVMMYANPRTGKREVTC 498
T++VR + N IGH +M + CDV+GLQE RR+G+ S + GY I S + K + GVG+A++E++ G G +VECIS RLM+VR+ + C VT VVGY P ET KD FW L +V +++ VV+M AN RTG+R C
Sbjct: 159 TFSVRTLVYSGRNPIGHNVMKVMQISSATGCDVIGLQETRREGQGSIAHD--GYVIIWSGARAGTKDKRGEQGVGIAIKEAMWETVGEEGRKVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRITAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGC 329
BLAST of mRNA_H-paniculata_contig454.11404.1 vs. uniprot
Match: A0A6H5K3Q1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Q1_9PHAE) HSP 1 Score: 108 bits (271), Expect = 1.670e-24 Identity = 68/173 (39.31%), Postives = 91/173 (52.60%), Query Frame = 1
Query: 1 TWNVRIMTEKRANGIGH-AEDLMLSAKLHECDVVGLQEIRRDGRVSFSTPAAGYTIYCSEHNPADEGKSEQLGVGLAMRESIVRPAGPGGIEVECISTRLMEVRIALTSNCVVTCVVGYTPVETAATQD------KDQFWATLHVTAAQVSAKESFVVMMYANPRTGKREVTC 498
T+NVR + N IGH +M CDV+GLQE RR G+ S + GY I S + K GVG+A++E++ G G VECIS RLM+VR+ + C VT +VGY P ET T + KD FW L +V +++ VV+M AN RTG+R C
Sbjct: 179 TFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFLVGYAPTETVRTTEGCDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRKGC 349
BLAST of mRNA_H-paniculata_contig454.11404.1 vs. uniprot
Match: A0A6H5JMB4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMB4_9PHAE) HSP 1 Score: 108 bits (270), Expect = 2.440e-24 Identity = 69/173 (39.88%), Postives = 90/173 (52.02%), Query Frame = 1
Query: 1 TWNVRIMTEKRANGIGH-AEDLMLSAKLHECDVVGLQEIRRDGRVSFSTPAAGYTIYCSEHNPADEGKSEQLGVGLAMRESIVRPAGPGGIEVECISTRLMEVRIALTSNCVVTCVVGYTPVETAAT------QDKDQFWATLHVTAAQVSAKESFVVMMYANPRTGKREVTC 498
T+NVR + N IGH +M CDV+GLQE RR G+ S + GY I S + K GVG+A++E++ G G VECIS RLM+VR+ + C VT VVGY P ET T KD FW L +V +++ VV+M AN RTG+R C
Sbjct: 90 TFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGC 260
BLAST of mRNA_H-paniculata_contig454.11404.1 vs. uniprot
Match: A0A6H5K6P8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6P8_9PHAE) HSP 1 Score: 107 bits (267), Expect = 3.180e-24 Identity = 68/169 (40.24%), Postives = 90/169 (53.25%), Query Frame = 1
Query: 1 TWNVRIMTEKRANGIGH-AEDLMLSAKLHECDVVGLQEIRRDGRVSFSTPAAGYTIYCSEHNPADEGKSEQLGVGLAMRESIVRPAGPGGIEVECISTRLMEVRIALTSNCVVTCVVGYTPVETAAT------QDKDQFWATLHVTAAQVSAKESFVVMMYANPRTGKR 486
T+N+R + N IGH +M CDVVGLQE RRDG+ S P GY I S + K GVG+A++E++ G G VECIS RLM+VR+ + C VT VVGY P ET T KD FW L +V +++ +V+M AN RTG++
Sbjct: 29 TFNLRTLHYSDRNPIGHNVMTVMQICSATGCDVVGLQENRRDGQGSI--PHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLLVLMDANARTGRK 195
BLAST of mRNA_H-paniculata_contig454.11404.1 vs. uniprot
Match: A0A6H5JMM5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMM5_9PHAE) HSP 1 Score: 103 bits (256), Expect = 3.560e-24 Identity = 61/143 (42.66%), Postives = 79/143 (55.24%), Query Frame = 1
Query: 88 CDVVGLQEIRRDGRVSFSTPAAGYTIYCSEHNPADEGKSEQLGVGLAMRESIVRPAGPGGIEVECISTRLMEVRIALTSNCVVTCVVGYTPVETAAT------QDKDQFWATLHVTAAQVSAKESFVVMMYANPRTGKREVTC 498
CDV+GLQE RR+G+ S + GY I S + K GVG A++E++ G G VECIS RLM+VR+ + C VT VVGY P ET T KD FW L +V +++ VV+M AN RTG+R V C
Sbjct: 12 CDVIGLQETRREGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGRAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRVGC 152
BLAST of mRNA_H-paniculata_contig454.11404.1 vs. uniprot
Match: A0A6H5K5A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A7_9PHAE) HSP 1 Score: 107 bits (266), Expect = 9.560e-24 Identity = 68/173 (39.31%), Postives = 90/173 (52.02%), Query Frame = 1
Query: 1 TWNVRIMTEKRANGIGH-AEDLMLSAKLHECDVVGLQEIRRDGRVSFSTPAAGYTIYCSEHNPADEGKSEQLGVGLAMRESIVRPAGPGGIEVECISTRLMEVRIALTSNCVVTCVVGYTPVETAAT------QDKDQFWATLHVTAAQVSAKESFVVMMYANPRTGKREVTC 498
T+NVR + N IGH +M CDV+GLQE RR+G+ S + GY I S + K GVG+A++E++ G G VECIS RLM+VR+ + C V VVGY P ET T KD FW L +V +++ VV+M AN RTG+R C
Sbjct: 137 TFNVRTLAYSGRNPIGHNVMTVMQIWSATGCDVIGLQETRREGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGHTCGVISVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGC 307
BLAST of mRNA_H-paniculata_contig454.11404.1 vs. uniprot
Match: A0A6H5L660_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L660_9PHAE) HSP 1 Score: 104 bits (260), Expect = 1.130e-23 Identity = 66/173 (38.15%), Postives = 89/173 (51.45%), Query Frame = 1
Query: 1 TWNVRIMTEKRANGIGH-AEDLMLSAKLHECDVVGLQEIRRDGRVSFSTPAAGYTIYCSEHNPADEGKSEQLGVGLAMRESIVRPAGPGGIEVECISTRLMEVRIALTSNCVVTCVVGYTPVETAAT------QDKDQFWATLHVTAAQVSAKESFVVMMYANPRTGKREVTC 498
T+NVR + N IGH +M CDV+GLQE RR+G+ S + GY I S + K GVG+A++E++ G G +VECI RLM+VR+ + C +T VV Y P ET T KD FW L +V + + VV+M AN RTG+R C
Sbjct: 152 TFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKETMWESVGEEGRKVECIGPRLMKVRLRIGRTCGITFVVRYAPTETVRTTAGGDINAKDSFWTALDAVIREVHSHDHLVVLMDANARTGRRRDGC 322
BLAST of mRNA_H-paniculata_contig454.11404.1 vs. uniprot
Match: A0A6H5KP87_9PHAE (Endo/exonuclease/phosphatase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP87_9PHAE) HSP 1 Score: 101 bits (252), Expect = 1.500e-23 Identity = 60/144 (41.67%), Postives = 80/144 (55.56%), Query Frame = 1
Query: 85 ECDVVGLQEIRRDGRVSFSTPAAGYTIYCSEHNPADEGKSEQLGVGLAMRESIVRPAGPGGIEVECISTRLMEVRIALTSNCVVTCVVGYTPVETAAT------QDKDQFWATLHVTAAQVSAKESFVVMMYANPRTGKREVTC 498
+CDV+GLQE RR G+ + + GY I S + K GVG+A++E++ G GG VECIS RLM+VR+ + C VT VVGY P ETA KD FW L +V +++ VV+M AN RTG+R C
Sbjct: 11 DCDVIGLQETRRAGQGAITHD--GYVIIWSGARAGTKDKRGVHGVGIAIKETMWDSVGEGGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDGC 152 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig454.11404.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig454.11404.1 >prot_H-paniculata_contig454.11404.1 ID=prot_H-paniculata_contig454.11404.1|Name=mRNA_H-paniculata_contig454.11404.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=163bp MTEKRANGIGHAEDLMLSAKLHECDVVGLQEIRRDGRVSFSTPAAGYTIYback to top mRNA from alignment at H-paniculata_contig454:37094..37600+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig454.11404.1 ID=mRNA_H-paniculata_contig454.11404.1|Name=mRNA_H-paniculata_contig454.11404.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=507bp|location=Sequence derived from alignment at H-paniculata_contig454:37094..37600+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig454:37094..37600+ >mRNA_H-paniculata_contig454.11404.1 ID=mRNA_H-paniculata_contig454.11404.1|Name=mRNA_H-paniculata_contig454.11404.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=978bp|location=Sequence derived from alignment at H-paniculata_contig454:37094..37600+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |