mRNA_H-paniculata_contig454.11404.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig454.11404.1
Unique NamemRNA_H-paniculata_contig454.11404.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig454.11404.1 vs. uniprot
Match: A0A6H5KZE6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZE6_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 3.320e-25
Identity = 68/173 (39.31%), Postives = 90/173 (52.02%), Query Frame = 1
Query:    1 TWNVRIMTEKRANGIGH-AEDLMLSAKLHECDVVGLQEIRRDGRVSFSTPAAGYTIYCSEHNPADEGKSEQLGVGLAMRESIVRPAGPGGIEVECISTRLMEVRIALTSNCVVTCVVGYTPVETAAT------QDKDQFWATLHVTAAQVSAKESFVVMMYANPRTGKREVTC 498
            T+NV  +     N IGH    +M       CDV+GLQE RR+G+ S +    GY I  S      + K    GVG+A++E+I    G  G  VECIS RLM+VR+ +   C VT VVGY P ET  +        KD FW  L     +V +++  VV+M AN RTG+R   C
Sbjct:   13 TFNVHTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHD--GYVIIWSGARAGTKDKRGGHGVGIAIKEAIWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRSTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMGANARTGRRRDGC 183          
BLAST of mRNA_H-paniculata_contig454.11404.1 vs. uniprot
Match: A0A6H5JQH5_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQH5_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 8.020e-25
Identity = 69/173 (39.88%), Postives = 92/173 (53.18%), Query Frame = 1
Query:    1 TWNVRIMTEKRANGIGH-AEDLMLSAKLHECDVVGLQEIRRDGRVSFSTPAAGYTIYCSEHNPADEGKSEQLGVGLAMRESIVRPAGPGGIEVECISTRLMEVRIALTSNCVVTCVVGYTPVETAAT------QDKDQFWATLHVTAAQVSAKESFVVMMYANPRTGKREVTC 498
            T+NVR +     N IGH    +M      +CDV+GLQE RR G+ + +    GY I  S      + K    GVG+A++E++    G GG  VECIS RLM+VR+ +   C VT VVGY P ETA          KD FW  L     +V +++  VV+M AN RTG+R   C
Sbjct:   94 TFNVRTLAYSGRNPIGHNVMTVMQICAATDCDVIGLQETRRAGQGAITHD--GYVIIWSGARAGTKDKRGVHGVGIAIKETMWDSVGEGGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDGC 264          
BLAST of mRNA_H-paniculata_contig454.11404.1 vs. uniprot
Match: A0A6H5JVN7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVN7_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 1.440e-24
Identity = 67/173 (38.73%), Postives = 93/173 (53.76%), Query Frame = 1
Query:    1 TWNVRIMTEKRANGIGH-AEDLMLSAKLHECDVVGLQEIRRDGRVSFSTPAAGYTIYCSEHNPADEGKSEQLGVGLAMRESIVRPAGPGGIEVECISTRLMEVRIALTSNCVVTCVVGYTPVETAA------TQDKDQFWATLHVTAAQVSAKESFVVMMYANPRTGKREVTC 498
            T++VR +     N IGH    +M  +    CDV+GLQE RR+G+ S +    GY I  S      + K  + GVG+A++E++    G  G +VECIS RLM+VR+ +   C VT VVGY P ET           KD FW  L     +V +++  VV+M AN RTG+R   C
Sbjct:  159 TFSVRTLVYSGRNPIGHNVMKVMQISSATGCDVIGLQETRREGQGSIAHD--GYVIIWSGARAGTKDKRGEQGVGIAIKEAMWETVGEEGRKVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRITAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGC 329          
BLAST of mRNA_H-paniculata_contig454.11404.1 vs. uniprot
Match: A0A6H5K3Q1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Q1_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 1.670e-24
Identity = 68/173 (39.31%), Postives = 91/173 (52.60%), Query Frame = 1
Query:    1 TWNVRIMTEKRANGIGH-AEDLMLSAKLHECDVVGLQEIRRDGRVSFSTPAAGYTIYCSEHNPADEGKSEQLGVGLAMRESIVRPAGPGGIEVECISTRLMEVRIALTSNCVVTCVVGYTPVETAATQD------KDQFWATLHVTAAQVSAKESFVVMMYANPRTGKREVTC 498
            T+NVR +     N IGH    +M       CDV+GLQE RR G+ S +    GY I  S      + K    GVG+A++E++    G  G  VECIS RLM+VR+ +   C VT +VGY P ET  T +      KD FW  L     +V +++  VV+M AN RTG+R   C
Sbjct:  179 TFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFLVGYAPTETVRTTEGCDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRKGC 349          
BLAST of mRNA_H-paniculata_contig454.11404.1 vs. uniprot
Match: A0A6H5JMB4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMB4_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 2.440e-24
Identity = 69/173 (39.88%), Postives = 90/173 (52.02%), Query Frame = 1
Query:    1 TWNVRIMTEKRANGIGH-AEDLMLSAKLHECDVVGLQEIRRDGRVSFSTPAAGYTIYCSEHNPADEGKSEQLGVGLAMRESIVRPAGPGGIEVECISTRLMEVRIALTSNCVVTCVVGYTPVETAAT------QDKDQFWATLHVTAAQVSAKESFVVMMYANPRTGKREVTC 498
            T+NVR +     N IGH    +M       CDV+GLQE RR G+ S +    GY I  S      + K    GVG+A++E++    G  G  VECIS RLM+VR+ +   C VT VVGY P ET  T        KD FW  L     +V +++  VV+M AN RTG+R   C
Sbjct:   90 TFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGC 260          
BLAST of mRNA_H-paniculata_contig454.11404.1 vs. uniprot
Match: A0A6H5K6P8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6P8_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 3.180e-24
Identity = 68/169 (40.24%), Postives = 90/169 (53.25%), Query Frame = 1
Query:    1 TWNVRIMTEKRANGIGH-AEDLMLSAKLHECDVVGLQEIRRDGRVSFSTPAAGYTIYCSEHNPADEGKSEQLGVGLAMRESIVRPAGPGGIEVECISTRLMEVRIALTSNCVVTCVVGYTPVETAAT------QDKDQFWATLHVTAAQVSAKESFVVMMYANPRTGKR 486
            T+N+R +     N IGH    +M       CDVVGLQE RRDG+ S   P  GY I  S      + K    GVG+A++E++    G  G  VECIS RLM+VR+ +   C VT VVGY P ET  T        KD FW  L     +V +++  +V+M AN RTG++
Sbjct:   29 TFNLRTLHYSDRNPIGHNVMTVMQICSATGCDVVGLQENRRDGQGSI--PHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLLVLMDANARTGRK 195          
BLAST of mRNA_H-paniculata_contig454.11404.1 vs. uniprot
Match: A0A6H5JMM5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMM5_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 3.560e-24
Identity = 61/143 (42.66%), Postives = 79/143 (55.24%), Query Frame = 1
Query:   88 CDVVGLQEIRRDGRVSFSTPAAGYTIYCSEHNPADEGKSEQLGVGLAMRESIVRPAGPGGIEVECISTRLMEVRIALTSNCVVTCVVGYTPVETAAT------QDKDQFWATLHVTAAQVSAKESFVVMMYANPRTGKREVTC 498
            CDV+GLQE RR+G+ S +    GY I  S      + K    GVG A++E++    G  G  VECIS RLM+VR+ +   C VT VVGY P ET  T        KD FW  L     +V +++  VV+M AN RTG+R V C
Sbjct:   12 CDVIGLQETRREGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGRAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRVGC 152          
BLAST of mRNA_H-paniculata_contig454.11404.1 vs. uniprot
Match: A0A6H5K5A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A7_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 9.560e-24
Identity = 68/173 (39.31%), Postives = 90/173 (52.02%), Query Frame = 1
Query:    1 TWNVRIMTEKRANGIGH-AEDLMLSAKLHECDVVGLQEIRRDGRVSFSTPAAGYTIYCSEHNPADEGKSEQLGVGLAMRESIVRPAGPGGIEVECISTRLMEVRIALTSNCVVTCVVGYTPVETAAT------QDKDQFWATLHVTAAQVSAKESFVVMMYANPRTGKREVTC 498
            T+NVR +     N IGH    +M       CDV+GLQE RR+G+ S +    GY I  S      + K    GVG+A++E++    G  G  VECIS RLM+VR+ +   C V  VVGY P ET  T        KD FW  L     +V +++  VV+M AN RTG+R   C
Sbjct:  137 TFNVRTLAYSGRNPIGHNVMTVMQIWSATGCDVIGLQETRREGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGHTCGVISVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGC 307          
BLAST of mRNA_H-paniculata_contig454.11404.1 vs. uniprot
Match: A0A6H5L660_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L660_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 1.130e-23
Identity = 66/173 (38.15%), Postives = 89/173 (51.45%), Query Frame = 1
Query:    1 TWNVRIMTEKRANGIGH-AEDLMLSAKLHECDVVGLQEIRRDGRVSFSTPAAGYTIYCSEHNPADEGKSEQLGVGLAMRESIVRPAGPGGIEVECISTRLMEVRIALTSNCVVTCVVGYTPVETAAT------QDKDQFWATLHVTAAQVSAKESFVVMMYANPRTGKREVTC 498
            T+NVR +     N IGH    +M       CDV+GLQE RR+G+ S +    GY I  S      + K    GVG+A++E++    G  G +VECI  RLM+VR+ +   C +T VV Y P ET  T        KD FW  L     +V + +  VV+M AN RTG+R   C
Sbjct:  152 TFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKETMWESVGEEGRKVECIGPRLMKVRLRIGRTCGITFVVRYAPTETVRTTAGGDINAKDSFWTALDAVIREVHSHDHLVVLMDANARTGRRRDGC 322          
BLAST of mRNA_H-paniculata_contig454.11404.1 vs. uniprot
Match: A0A6H5KP87_9PHAE (Endo/exonuclease/phosphatase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP87_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 1.500e-23
Identity = 60/144 (41.67%), Postives = 80/144 (55.56%), Query Frame = 1
Query:   85 ECDVVGLQEIRRDGRVSFSTPAAGYTIYCSEHNPADEGKSEQLGVGLAMRESIVRPAGPGGIEVECISTRLMEVRIALTSNCVVTCVVGYTPVETAAT------QDKDQFWATLHVTAAQVSAKESFVVMMYANPRTGKREVTC 498
            +CDV+GLQE RR G+ + +    GY I  S      + K    GVG+A++E++    G GG  VECIS RLM+VR+ +   C VT VVGY P ETA          KD FW  L     +V +++  VV+M AN RTG+R   C
Sbjct:   11 DCDVIGLQETRRAGQGAITHD--GYVIIWSGARAGTKDKRGVHGVGIAIKETMWDSVGEGGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDGC 152          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig454.11404.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KZE6_9PHAE3.320e-2539.31Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5JQH5_9PHAE8.020e-2539.88Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JVN7_9PHAE1.440e-2438.73Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K3Q1_9PHAE1.670e-2439.31Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JMB4_9PHAE2.440e-2439.88Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K6P8_9PHAE3.180e-2440.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMM5_9PHAE3.560e-2442.66Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K5A7_9PHAE9.560e-2439.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L660_9PHAE1.130e-2338.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KP87_9PHAE1.500e-2341.67Endo/exonuclease/phosphatase domain-containing pro... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig454contigH-paniculata_contig454:37094..37600 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size507
Cds size489
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930361.5029392-UTR-H-paniculata_contig454:37093..371111622930361.5029392-UTR-H-paniculata_contig454:37093..37111Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig454 37094..37111 +
1691481257.616165-UTR-H-paniculata_contig454:37093..371111691481257.616165-UTR-H-paniculata_contig454:37093..37111Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig454 37094..37111 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930361.5195992-CDS-H-paniculata_contig454:37111..376001622930361.5195992-CDS-H-paniculata_contig454:37111..37600Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig454 37112..37600 +
1691481257.6270032-CDS-H-paniculata_contig454:37111..376001691481257.6270032-CDS-H-paniculata_contig454:37111..37600Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig454 37112..37600 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig454.11404.1prot_H-paniculata_contig454.11404.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig454 37112..37600 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig454.11404.1

>prot_H-paniculata_contig454.11404.1 ID=prot_H-paniculata_contig454.11404.1|Name=mRNA_H-paniculata_contig454.11404.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=163bp
MTEKRANGIGHAEDLMLSAKLHECDVVGLQEIRRDGRVSFSTPAAGYTIY
CSEHNPADEGKSEQLGVGLAMRESIVRPAGPGGIEVECISTRLMEVRIAL
TSNCVVTCVVGYTPVETAATQDKDQFWATLHVTAAQVSAKESFVVMMYAN
PRTGKREVTCAL*
back to top

mRNA from alignment at H-paniculata_contig454:37094..37600+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig454.11404.1 ID=mRNA_H-paniculata_contig454.11404.1|Name=mRNA_H-paniculata_contig454.11404.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=507bp|location=Sequence derived from alignment at H-paniculata_contig454:37094..37600+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACCTGGAATGTACGTATCATGACTGAGAAGAGAGCAAATGGGATTGGCCA CGCGGAAGACCTGATGCTGTCCGCAAAATTGCACGAGTGTGACGTCGTCG GCCTGCAGGAGATCAGACGAGACGGACGGGTGTCGTTCAGCACCCCAGCT GCAGGATACACGATATACTGCAGCGAACACAACCCCGCCGATGAGGGCAA ATCTGAGCAACTGGGTGTGGGGCTCGCCATGAGGGAGTCCATCGTGCGGC CGGCAGGGCCTGGCGGCATAGAGGTGGAATGTATCAGCACCCGTCTGATG GAGGTTCGCATCGCACTCACATCCAACTGCGTGGTGACCTGTGTCGTCGG ATATACTCCTGTCGAGACGGCTGCCACGCAGGATAAGGACCAATTCTGGG CAACGCTACATGTAACCGCTGCGCAGGTATCTGCCAAGGAGTCCTTTGTC GTCATGATGTATGCGAACCCCAGGACTGGGAAGAGGGAAGTCACCTGCGC ACTGTAA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig454:37094..37600+

>mRNA_H-paniculata_contig454.11404.1 ID=mRNA_H-paniculata_contig454.11404.1|Name=mRNA_H-paniculata_contig454.11404.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=978bp|location=Sequence derived from alignment at H-paniculata_contig454:37094..37600+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACTGAGAAGAGAGCAAATGGGATTGGCCACGCGGAAGACCTGATGCT
GTCCGCAAAATTGCACGAGTGTGACGTCGTCGGCCTGCAGGAGATCAGAC
GAGACGGACGGGTGTCGTTCAGCACCCCAGCTGCAGGATACACGATATAC
TGCAGCGAACACAACCCCGCCGATGAGGGCAAATCTGAGCAACTGGGTGT
GGGGCTCGCCATGAGGGAGTCCATCGTGCGGCCGGCAGGGCCTGGCGGCA
TAGAGGTGGAATGTATCAGCACCCGTCTGATGGAGGTTCGCATCGCACTC
ACATCCAACTGCGTGGTGACCTGTGTCGTCGGATATACTCCTGTCGAGAC
GGCTGCCACGCAGGATAAGGACCAATTCTGGGCAACGCTACATGTAACCG
CTGCGCAGGTATCTGCCAAGGAGTCCTTTGTCGTCATGATGTATGCGAAC
CCCAGGACTGGGAAGAGGGAAGTCACCTGCGCACTGTAAATGACTGAGAA
GAGAGCAAATGGGATTGGCCACGCGGAAGACCTGATGCTGTCCGCAAAAT
TGCACGAGTGTGACGTCGTCGGCCTGCAGGAGATCAGACGAGACGGACGG
GTGTCGTTCAGCACCCCAGCTGCAGGATACACGATATACTGCAGCGAACA
CAACCCCGCCGATGAGGGCAAATCTGAGCAACTGGGTGTGGGGCTCGCCA
TGAGGGAGTCCATCGTGCGGCCGGCAGGGCCTGGCGGCATAGAGGTGGAA
TGTATCAGCACCCGTCTGATGGAGGTTCGCATCGCACTCACATCCAACTG
CGTGGTGACCTGTGTCGTCGGATATACTCCTGTCGAGACGGCTGCCACGC
AGGATAAGGACCAATTCTGGGCAACGCTACATGTAACCGCTGCGCAGGTA
TCTGCCAAGGAGTCCTTTGTCGTCATGATGTATGCGAACCCCAGGACTGG
GAAGAGGGAAGTCACCTGCGCACTGTAA
back to top