mRNA_H-paniculata_contig45354.11395.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig45354.11395.1
Unique NamemRNA_H-paniculata_contig45354.11395.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig45354.11395.1 vs. uniprot
Match: A0A6D2JUM8_9BRAS (Integrase catalytic domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2JUM8_9BRAS)

HSP 1 Score: 62.8 bits (151), Expect = 1.330e-8
Identity = 50/146 (34.25%), Postives = 73/146 (50.00%), Query Frame = 1
Query:    1 RCHRCDQIGHVHTQCTARVTLS-----TDPNPPQCGL----PVALTNQNPTINNGNIWVSDSGASNHMTNDLSKIYDLRKPVAGEDVVMLGDGSTLVVDLVGKLHLIIHSTTDVPATL-EVSYLPELNFNLFSLHKIQGKYPISLD 408
            RC  C   GH   +C+ ++ LS     T P P Q       P A     PT N  N WV DSGA++H+T DLS +  L +P  G + V + DG+ L +   G   L    T   P TL +V Y+P+L  NL S++++     +S++
Sbjct:   60 RCQICGVHGHSARRCS-QINLSGGFLGTQPRPQQPTSAPWQPRANLASTPTYNANN-WVMDSGATHHLTTDLSNL-SLHQPYLGGEEVTIADGTNLHISHTGSSQL---PTLSKPLTLTDVLYVPDLKKNLISVYRLCNANRVSVE 199          
BLAST of mRNA_H-paniculata_contig45354.11395.1 vs. uniprot
Match: A0A6D2KMT9_9BRAS (Integrase catalytic domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2KMT9_9BRAS)

HSP 1 Score: 62.8 bits (151), Expect = 1.550e-8
Identity = 50/146 (34.25%), Postives = 73/146 (50.00%), Query Frame = 1
Query:    1 RCHRCDQIGHVHTQCTARVTLS-----TDPNPPQCGL----PVALTNQNPTINNGNIWVSDSGASNHMTNDLSKIYDLRKPVAGEDVVMLGDGSTLVVDLVGKLHLIIHSTTDVPATL-EVSYLPELNFNLFSLHKIQGKYPISLD 408
            RC  C   GH   +C+ ++ LS     T P P Q       P A     PT N  N WV DSGA++H+T DLS +  L +P  G + V + DG+ L +   G   L    T   P TL +V Y+P+L  NL S++++     +S++
Sbjct:  278 RCQICGVHGHSARRCS-QINLSGGFLGTQPRPQQPTSAPWQPRANLASTPTYNANN-WVMDSGATHHLTTDLSNL-SLHQPYLGGEEVTIADGTNLHISHTGSSQL---PTLSKPLTLTDVLYVPDLKKNLISVYRLCNANRVSVE 417          
BLAST of mRNA_H-paniculata_contig45354.11395.1 vs. uniprot
Match: A0A5E4G702_PRUDU (PREDICTED: Retrovirus-related Pol poly from (Fragment) n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5E4G702_PRUDU)

HSP 1 Score: 62.4 bits (150), Expect = 2.000e-8
Identity = 44/150 (29.33%), Postives = 74/150 (49.33%), Query Frame = 1
Query:    4 CHRCDQIGHVHTQCTARVTLSTDPN--PPQCGLPVALTNQNPTINNGNIWVSDSGASNHMTNDLSKIYDLRKPVAGEDVVMLGDGSTLVVDLVGKLHLIIHSTTDVPATLEVSYLPELNFNLFSLHKIQGKYPISL--DAAGTHINNKLS 441
            C  C++ GH    C  R+ LS + N  P +   P A    +      N+W++DSGASNH+T+++S +     P  G + + +GDG++L +        I+H++      L V ++P++  NL S+HK       SL  D  G  I +  +
Sbjct:   69 CQICERKGHSALTCRQRLNLSYNANVVPARFQAPSAHYAHSAFPPTDNLWLADSGASNHVTSNMSNLGH-SSPYTGSETLRVGDGNSLPISHTRST--ILHTSNAKFHLLNVLHVPQVAHNLLSVHKFVSDNHCSLIFDEIGVSIKDNAT 215          
BLAST of mRNA_H-paniculata_contig45354.11395.1 vs. uniprot
Match: A0A2I0VFW7_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0VFW7_9ASPA)

HSP 1 Score: 61.6 bits (148), Expect = 3.840e-8
Identity = 46/137 (33.58%), Postives = 71/137 (51.82%), Query Frame = 1
Query:    4 CHRCDQIGHVHTQCTARVTLSTDP-NPPQCGLPVALTNQNPTINNGNIWVSDSGASNHMTNDLSKIYDLRKPVA--GEDVVMLGDGSTLVVDLVGKLHLIIHSTTDVPATLEVSYLPELNFNLFSLHKIQGKYPISL 405
            C  C+++GH+   C  R      P NP      +A  NQ P+ +    W+ DSGASNH+T DLS   +L+ PV   G+D V + +GS L V   G+  L +  T       ++ ++P L+ NL S+ K+    P+S+
Sbjct:   18 CQICNKVGHIALNCWHRSNPRFAPTNPRSINALLAQPNQIPSQD----WIIDSGASNHLTPDLS---NLQYPVQYHGQDSVSIANGSQLPVAHSGQCLLPLPETPRKLYLRKLLHVPHLSHNLLSVSKLTTDNPVSV 147          
BLAST of mRNA_H-paniculata_contig45354.11395.1 vs. uniprot
Match: A0A1J3J5Y3_NOCCA (gag_pre-integrs domain-containing protein n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3J5Y3_NOCCA)

HSP 1 Score: 61.2 bits (147), Expect = 4.570e-8
Identity = 47/143 (32.87%), Postives = 72/143 (50.35%), Query Frame = 1
Query:   10 RCDQIGHVHTQCTARVTLSTDPNPPQCGLPVALTNQNPTINNGNIWVSDSGASNHMTNDLSKIYDLRKPVAGEDVVMLGDGSTLVVDLVGKLHL-IIHSTTDVPATLEVSYLPELNFNLFSLHKIQGKYPISLDAAGTHINNK 435
            RC Q+ H   Q   R  L T P PP   LP A     P+      WV DSGA++H+T+DLS +  L +P  G + V++G+G+ L +   G   L  IH +  +   L V   P +  NL S++++     +S++ + TH   K
Sbjct:  252 RCSQL-HTVQQSPQRALLPTPPYPPSPWLPRANLATTPS------WVVDSGATHHITSDLSNL-SLHQPYTGGEEVIVGNGNGLPITRTGFTSLPSIHKSLSLHNVLCV---PSIQKNLISVYRLCNVNQVSVEFSPTHFQVK 383          
BLAST of mRNA_H-paniculata_contig45354.11395.1 vs. uniprot
Match: A0A1J3D5H7_NOCCA (Uncharacterized protein (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3D5H7_NOCCA)

HSP 1 Score: 59.7 bits (143), Expect = 5.000e-8
Identity = 46/148 (31.08%), Postives = 72/148 (48.65%), Query Frame = 1
Query:   10 RCDQIGHVHTQCTARVTLSTDPNPPQCGLPVALTNQNPTINNGNIWVSDSGASNHMTNDLSKIYDLRKPVAGEDVVMLGDGSTLVVDLVGKLHLIIHSTTDVPATLE------VSYLPELNFNLFSLHKIQGKYPISLDAAGTHINNK 435
            RC Q+ H   Q   R  L T P PP   LP A     P+      WV DSGA++H+T+DLS +  L +P  G + V++G+G+ L +   G         T +P+TL+      V  +P +  NL S++++     +S++    H   K
Sbjct:    4 RCSQL-HTVQQSPQRALLPTPPYPPSPWLPRANLATTPS------WVVDSGATHHITSDLSNL-SLHQPYTGGEEVIVGNGNGLPITHTGF--------TSLPSTLKSLSLHNVLCVPSIQKNLISVYRLCNANQVSVEFFPAHFQVK 135          
BLAST of mRNA_H-paniculata_contig45354.11395.1 vs. uniprot
Match: A0A2I0VGA3_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0VGA3_9ASPA)

HSP 1 Score: 61.2 bits (147), Expect = 5.220e-8
Identity = 48/141 (34.04%), Postives = 69/141 (48.94%), Query Frame = 1
Query:    4 CHRCDQIGHVHTQCTARVTLSTDPNPPQCGLPVALTNQNPTI-NNGNIWVSDSGASNHMTNDLSKIYDLRKPVAGEDVVMLGDGSTLVVDLVGKLHLIIHSTTDVPATLEVSYLPELNFNLFSLHKIQGKYPISL--DAAG 417
            C  C +IGH+   C  R      P       P AL  Q  TI NN N W+ D+GAS H+T D+S +       AG+D V + +GST+ +   G+  L +  T       ++ ++P L  NL S+ K+    PIS+  DA G
Sbjct:  283 CQICGKIGHIAINCWHRCNFKYAPT--NTRSPQALQAQ--TIPNNSNEWILDTGASAHLTPDISNVQ-YPHSYAGQDSVSIANGSTVPIQNSGQGILPLPDTPRKLYLRKILHVPSLAQNLLSVSKLTADNPISIKFDANG 418          
BLAST of mRNA_H-paniculata_contig45354.11395.1 vs. uniprot
Match: A0A2N9F8M1_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9F8M1_FAGSY)

HSP 1 Score: 60.8 bits (146), Expect = 7.270e-8
Identity = 40/128 (31.25%), Postives = 64/128 (50.00%), Query Frame = 1
Query:    4 CHRCDQIGHVHTQCTARVTLSTD-PNPPQCGLPVA-LTNQNPTINNGNIWVSDSGASNHMTNDLSKIYDLRKPVAGEDVVMLGDGSTLVVDLVGKLHLIIHSTTDVPATLEVSYLPELNFNLFSLHKI 381
            C  C ++GH    C  R+  +    NPP     +A  +N N T   G  W++DSGAS+H+T DL+ +     P  G + V +G+G  L +  +G   L  H+   +     V ++P +  NL S+HK+
Sbjct:  318 CQICGKLGHYAIDCYHRMDFAYQGKNPPTKLAAMANASNLNMTQGTGETWLTDSGASDHITADLNNLNQ-PTPFKGPEQVSVGNGQNLPIQNIGNTQL--HTKLSLFKLRNVLHVPRIASNLLSVHKL 442          
BLAST of mRNA_H-paniculata_contig45354.11395.1 vs. uniprot
Match: A0A2N9HVC4_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HVC4_FAGSY)

HSP 1 Score: 60.5 bits (145), Expect = 9.880e-8
Identity = 40/128 (31.25%), Postives = 64/128 (50.00%), Query Frame = 1
Query:    4 CHRCDQIGHVHTQCTARVTLSTD-PNPPQCGLPVA-LTNQNPTINNGNIWVSDSGASNHMTNDLSKIYDLRKPVAGEDVVMLGDGSTLVVDLVGKLHLIIHSTTDVPATLEVSYLPELNFNLFSLHKI 381
            C  C ++GH    C  R+  +    NPP     +A  +N N T   G  W++DSGAS+H+T DL+ +     P  G + V +G+G  L +  +G   L  H+   +     V ++P +  NL S+HK+
Sbjct:  318 CQICGKLGHYAIYCYHRMDFAYQGKNPPTKLAAMANASNLNMTQGTGETWLTDSGASDHITADLNNLNQ-PTPFKGPEQVSVGNGQNLPIQNIGNTQL--HTKLSLFKLRNVLHVPRIASNLLSVHKL 442          
BLAST of mRNA_H-paniculata_contig45354.11395.1 vs. uniprot
Match: A0A5N6NBX7_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NBX7_9ASTR)

HSP 1 Score: 60.5 bits (145), Expect = 9.940e-8
Identity = 44/147 (29.93%), Postives = 72/147 (48.98%), Query Frame = 1
Query:    1 RCHRCDQIGHVHTQCTARVTLSTDPNPPQC----GLPVALTNQNPTINNGNIWVSDSGASNHMTNDLSKIYDLRKPVAGEDVVMLGDGSTLVVDLVGKLHLIIHSTTDVPATLE-VSYLPELNFNLFSLHKIQGKYPISLDAAGTHI 426
            +C  C   GH  T CTA         PP        P A      + N+   W+ D+GASNH+TNDLS +  L  P  G D +++G+GS+L +  +G   ++I   ++VP  L+ V  +P ++ N+ S+ ++    P+ +     H 
Sbjct:  584 KCQWCFTKGHSLTTCTAFKKAHPHITPPSFPKLNSKPQAHMAATTSANSTPAWLFDTGASNHVTNDLS-VLSLHNPYDGTDDLIIGNGSSLPITHIGSTTILI---SNVPVHLQHVLCVPLISRNIISISRLCIDNPLLISFFSCHF 726          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig45354.11395.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6D2JUM8_9BRAS1.330e-834.25Integrase catalytic domain-containing protein n=1 ... [more]
A0A6D2KMT9_9BRAS1.550e-834.25Integrase catalytic domain-containing protein n=1 ... [more]
A0A5E4G702_PRUDU2.000e-829.33PREDICTED: Retrovirus-related Pol poly from (Fragm... [more]
A0A2I0VFW7_9ASPA3.840e-833.58Retrovirus-related Pol polyprotein from transposon... [more]
A0A1J3J5Y3_NOCCA4.570e-832.87gag_pre-integrs domain-containing protein n=1 Tax=... [more]
A0A1J3D5H7_NOCCA5.000e-831.08Uncharacterized protein (Fragment) n=1 Tax=Noccaea... [more]
A0A2I0VGA3_9ASPA5.220e-834.04Retrovirus-related Pol polyprotein from transposon... [more]
A0A2N9F8M1_FAGSY7.270e-831.25Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A2N9HVC4_FAGSY9.880e-831.25Integrase catalytic domain-containing protein n=1 ... [more]
A0A5N6NBX7_9ASTR9.940e-829.93Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig45354contigH-paniculata_contig45354:578..1498 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score68.6
Seed ortholog evalue3e-09
Seed eggNOG ortholog50452.A0A087HSL5
Hectar predicted targeting categoryother localisation
EggNOG free text desc.cysteine-rich RLK (RECEPTOR-like protein kinase) 8
EggNOG OGs37RIF@33090,3G9AM@35493,COG2801@1,KOG0017@2759
COG Functional cat.K
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons2
Model size462
Cds size462
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930360.4169264-CDS-H-paniculata_contig45354:577..6621622930360.4169264-CDS-H-paniculata_contig45354:577..662Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45354 578..662 +
1691481257.161889-CDS-H-paniculata_contig45354:577..6621691481257.161889-CDS-H-paniculata_contig45354:577..662Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45354 578..662 +
1622930360.4358091-CDS-H-paniculata_contig45354:1121..14981622930360.4358091-CDS-H-paniculata_contig45354:1121..1498Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45354 1122..1498 +
1691481257.1770327-CDS-H-paniculata_contig45354:1121..14981691481257.1770327-CDS-H-paniculata_contig45354:1121..1498Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45354 1122..1498 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig45354.11395.1prot_H-paniculata_contig45354.11395.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig45354 578..1498 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig45354.11395.1

>prot_H-paniculata_contig45354.11395.1 ID=prot_H-paniculata_contig45354.11395.1|Name=mRNA_H-paniculata_contig45354.11395.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=154bp
RCHRCDQIGHVHTQCTARVTLSTDPNPPQCGLPVALTNQNPTINNGNIWV
SDSGASNHMTNDLSKIYDLRKPVAGEDVVMLGDGSTLVVDLVGKLHLIIH
STTDVPATLEVSYLPELNFNLFSLHKIQGKYPISLDAAGTHINNKLSFPR
KNTG
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mRNA from alignment at H-paniculata_contig45354:578..1498+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig45354.11395.1 ID=mRNA_H-paniculata_contig45354.11395.1|Name=mRNA_H-paniculata_contig45354.11395.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=921bp|location=Sequence derived from alignment at H-paniculata_contig45354:578..1498+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGTGCCACCGATGTGACCAGATCGGCCACGTCCACACTCAGTGCACTGC TCGTGTCACCCTCAGCACGGATCCTAATCCACCTCGTTCGTTACTGGTTG CCACGTCAACACCATTGAAAAACCGTTCAGAGGTATATCATCACCAGCAC TACCCCCTTCAATAATCCCAGGACGTACGCCAGCCGCCCTTCTCTCAGCA ACAGACACAACAGCAACAGCAGCAGCCCTTCCCCCCTGAACCTGACTTCG ATCTGACTCCATTTCCAGCGAGGTACTCACCCCTCCTTACAGCACAATTT GTGCTTCCAGGCAAGTGTCGTATTTTGGAAAGGTCTGTACTGTCTGATTT TGATGATCATGAGAATGTTAATTTTTCTGGTGTTGGGATGGGTAACGATG TGCAAGACCGTGGTAATGTTGATGGAGTAGAGATCAATGAGACTGAGACT AAGACTGGTATCCCGAATGTTCTGTACAAGAATTGTTTTTCGAGCACTGT CGACTTGATTGATGTTGAGAAGTTGGATGATACACAGGATGGAGAATGCG GTTTGCCTGTAGCTTTGACGAATCAAAATCCAACTATTAACAATGGCAAT ATATGGGTGTCTGATTCTGGTGCAAGTAACCACATGACGAACGATCTTTC AAAAATTTATGACCTTCGCAAGCCGGTGGCAGGCGAAGATGTGGTAATGT TGGGGGATGGATCGACTCTGGTGGTAGATTTGGTGGGAAAGTTGCATTTG ATTATTCACTCCACTACTGACGTGCCTGCCACACTTGAAGTATCATACTT ACCGGAGTTGAACTTCAACCTTTTTTCCCTTCACAAAATTCAAGGGAAGT ATCCAATATCTTTGGATGCAGCAGGTACACACATAAATAACAAGCTCTCC TTTCCCCGTAAAAATACAGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig45354:578..1498+

>mRNA_H-paniculata_contig45354.11395.1 ID=mRNA_H-paniculata_contig45354.11395.1|Name=mRNA_H-paniculata_contig45354.11395.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=924bp|location=Sequence derived from alignment at H-paniculata_contig45354:578..1498+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGTGCCACCGATGTGACCAGATCGGCCACGTCCACACTCAGTGCACTGC
TCGTGTCACCCTCAGCACGGATCCTAATCCACCTCCGGTGCCACCGATGT
GACCAGATCGGCCACGTCCACACTCAGTGCACTGCTCGTGTCACCCTCAG
CACGGATCCTAATCCACCTCAATGCGGTTTGCCTGTAGCTTTGACGAATC
AAAATCCAACTATTAACAATGGCAATATATGGGTGTCTGATTCTGGTGCA
AGTAACCACATGACGAACGATCTTTCAAAAATTTATGACCTTCGCAAGCC
GGTGGCAGGCGAAGATGTGGTAATGTTGGGGGATGGATCGACTCTGGTGG
TAGATTTGGTGGGAAAGTTGCATTTGATTATTCACTCCACTACTGACGTG
CCTGCCACACTTGAAGTATCATACTTACCGGAGTTGAACTTCAACCTTTT
TTCCCTTCACAAAATTCAAGGGAAGTATCCAATATCTTTGGATGCAGCAG
GTACACACATAAATAACAAGCTCTCCTTTCCCCGTAAAAATACAGGAAAT
GCGGTTTGCCTGTAGCTTTGACGAATCAAAATCCAACTATTAACAATGGC
AATATATGGGTGTCTGATTCTGGTGCAAGTAACCACATGACGAACGATCT
TTCAAAAATTTATGACCTTCGCAAGCCGGTGGCAGGCGAAGATGTGGTAA
TGTTGGGGGATGGATCGACTCTGGTGGTAGATTTGGTGGGAAAGTTGCAT
TTGATTATTCACTCCACTACTGACGTGCCTGCCACACTTGAAGTATCATA
CTTACCGGAGTTGAACTTCAACCTTTTTTCCCTTCACAAAATTCAAGGGA
AGTATCCAATATCTTTGGATGCAGCAGGTACACACATAAATAACAAGCTC
TCCTTTCCCCGTAAAAATACAGGA
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