prot_H-paniculata_contig45354.11395.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig45354.11395.1
Unique Nameprot_H-paniculata_contig45354.11395.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length154
Homology
BLAST of mRNA_H-paniculata_contig45354.11395.1 vs. uniprot
Match: A0A6D2JUM8_9BRAS (Integrase catalytic domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2JUM8_9BRAS)

HSP 1 Score: 62.8 bits (151), Expect = 1.330e-8
Identity = 50/146 (34.25%), Postives = 73/146 (50.00%), Query Frame = 0
Query:    1 RCHRCDQIGHVHTQCTARVTLS-----TDPNPPQCGL----PVALTNQNPTINNGNIWVSDSGASNHMTNDLSKIYDLRKPVAGEDVVMLGDGSTLVVDLVGKLHLIIHSTTDVPATL-EVSYLPELNFNLFSLHKIQGKYPISLD 136
            RC  C   GH   +C+ ++ LS     T P P Q       P A     PT N  N WV DSGA++H+T DLS +  L +P  G + V + DG+ L +   G   L    T   P TL +V Y+P+L  NL S++++     +S++
Sbjct:   60 RCQICGVHGHSARRCS-QINLSGGFLGTQPRPQQPTSAPWQPRANLASTPTYNANN-WVMDSGATHHLTTDLSNL-SLHQPYLGGEEVTIADGTNLHISHTGSSQL---PTLSKPLTLTDVLYVPDLKKNLISVYRLCNANRVSVE 199          
BLAST of mRNA_H-paniculata_contig45354.11395.1 vs. uniprot
Match: A0A6D2KMT9_9BRAS (Integrase catalytic domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2KMT9_9BRAS)

HSP 1 Score: 62.8 bits (151), Expect = 1.550e-8
Identity = 50/146 (34.25%), Postives = 73/146 (50.00%), Query Frame = 0
Query:    1 RCHRCDQIGHVHTQCTARVTLS-----TDPNPPQCGL----PVALTNQNPTINNGNIWVSDSGASNHMTNDLSKIYDLRKPVAGEDVVMLGDGSTLVVDLVGKLHLIIHSTTDVPATL-EVSYLPELNFNLFSLHKIQGKYPISLD 136
            RC  C   GH   +C+ ++ LS     T P P Q       P A     PT N  N WV DSGA++H+T DLS +  L +P  G + V + DG+ L +   G   L    T   P TL +V Y+P+L  NL S++++     +S++
Sbjct:  278 RCQICGVHGHSARRCS-QINLSGGFLGTQPRPQQPTSAPWQPRANLASTPTYNANN-WVMDSGATHHLTTDLSNL-SLHQPYLGGEEVTIADGTNLHISHTGSSQL---PTLSKPLTLTDVLYVPDLKKNLISVYRLCNANRVSVE 417          
BLAST of mRNA_H-paniculata_contig45354.11395.1 vs. uniprot
Match: A0A5E4G702_PRUDU (PREDICTED: Retrovirus-related Pol poly from (Fragment) n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5E4G702_PRUDU)

HSP 1 Score: 62.4 bits (150), Expect = 2.000e-8
Identity = 44/150 (29.33%), Postives = 74/150 (49.33%), Query Frame = 0
Query:    2 CHRCDQIGHVHTQCTARVTLSTDPN--PPQCGLPVALTNQNPTINNGNIWVSDSGASNHMTNDLSKIYDLRKPVAGEDVVMLGDGSTLVVDLVGKLHLIIHSTTDVPATLEVSYLPELNFNLFSLHKIQGKYPISL--DAAGTHINNKLS 147
            C  C++ GH    C  R+ LS + N  P +   P A    +      N+W++DSGASNH+T+++S +     P  G + + +GDG++L +        I+H++      L V ++P++  NL S+HK       SL  D  G  I +  +
Sbjct:   69 CQICERKGHSALTCRQRLNLSYNANVVPARFQAPSAHYAHSAFPPTDNLWLADSGASNHVTSNMSNLGH-SSPYTGSETLRVGDGNSLPISHTRST--ILHTSNAKFHLLNVLHVPQVAHNLLSVHKFVSDNHCSLIFDEIGVSIKDNAT 215          
BLAST of mRNA_H-paniculata_contig45354.11395.1 vs. uniprot
Match: A0A2I0VFW7_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0VFW7_9ASPA)

HSP 1 Score: 61.6 bits (148), Expect = 3.840e-8
Identity = 46/137 (33.58%), Postives = 71/137 (51.82%), Query Frame = 0
Query:    2 CHRCDQIGHVHTQCTARVTLSTDP-NPPQCGLPVALTNQNPTINNGNIWVSDSGASNHMTNDLSKIYDLRKPVA--GEDVVMLGDGSTLVVDLVGKLHLIIHSTTDVPATLEVSYLPELNFNLFSLHKIQGKYPISL 135
            C  C+++GH+   C  R      P NP      +A  NQ P+ +    W+ DSGASNH+T DLS   +L+ PV   G+D V + +GS L V   G+  L +  T       ++ ++P L+ NL S+ K+    P+S+
Sbjct:   18 CQICNKVGHIALNCWHRSNPRFAPTNPRSINALLAQPNQIPSQD----WIIDSGASNHLTPDLS---NLQYPVQYHGQDSVSIANGSQLPVAHSGQCLLPLPETPRKLYLRKLLHVPHLSHNLLSVSKLTTDNPVSV 147          
BLAST of mRNA_H-paniculata_contig45354.11395.1 vs. uniprot
Match: A0A1J3J5Y3_NOCCA (gag_pre-integrs domain-containing protein n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3J5Y3_NOCCA)

HSP 1 Score: 61.2 bits (147), Expect = 4.570e-8
Identity = 47/143 (32.87%), Postives = 72/143 (50.35%), Query Frame = 0
Query:    4 RCDQIGHVHTQCTARVTLSTDPNPPQCGLPVALTNQNPTINNGNIWVSDSGASNHMTNDLSKIYDLRKPVAGEDVVMLGDGSTLVVDLVGKLHL-IIHSTTDVPATLEVSYLPELNFNLFSLHKIQGKYPISLDAAGTHINNK 145
            RC Q+ H   Q   R  L T P PP   LP A     P+      WV DSGA++H+T+DLS +  L +P  G + V++G+G+ L +   G   L  IH +  +   L V   P +  NL S++++     +S++ + TH   K
Sbjct:  252 RCSQL-HTVQQSPQRALLPTPPYPPSPWLPRANLATTPS------WVVDSGATHHITSDLSNL-SLHQPYTGGEEVIVGNGNGLPITRTGFTSLPSIHKSLSLHNVLCV---PSIQKNLISVYRLCNVNQVSVEFSPTHFQVK 383          
BLAST of mRNA_H-paniculata_contig45354.11395.1 vs. uniprot
Match: A0A1J3D5H7_NOCCA (Uncharacterized protein (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3D5H7_NOCCA)

HSP 1 Score: 59.7 bits (143), Expect = 5.000e-8
Identity = 46/148 (31.08%), Postives = 72/148 (48.65%), Query Frame = 0
Query:    4 RCDQIGHVHTQCTARVTLSTDPNPPQCGLPVALTNQNPTINNGNIWVSDSGASNHMTNDLSKIYDLRKPVAGEDVVMLGDGSTLVVDLVGKLHLIIHSTTDVPATLE------VSYLPELNFNLFSLHKIQGKYPISLDAAGTHINNK 145
            RC Q+ H   Q   R  L T P PP   LP A     P+      WV DSGA++H+T+DLS +  L +P  G + V++G+G+ L +   G         T +P+TL+      V  +P +  NL S++++     +S++    H   K
Sbjct:    4 RCSQL-HTVQQSPQRALLPTPPYPPSPWLPRANLATTPS------WVVDSGATHHITSDLSNL-SLHQPYTGGEEVIVGNGNGLPITHTGF--------TSLPSTLKSLSLHNVLCVPSIQKNLISVYRLCNANQVSVEFFPAHFQVK 135          
BLAST of mRNA_H-paniculata_contig45354.11395.1 vs. uniprot
Match: A0A2I0VGA3_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0VGA3_9ASPA)

HSP 1 Score: 61.2 bits (147), Expect = 5.220e-8
Identity = 48/141 (34.04%), Postives = 69/141 (48.94%), Query Frame = 0
Query:    2 CHRCDQIGHVHTQCTARVTLSTDPNPPQCGLPVALTNQNPTI-NNGNIWVSDSGASNHMTNDLSKIYDLRKPVAGEDVVMLGDGSTLVVDLVGKLHLIIHSTTDVPATLEVSYLPELNFNLFSLHKIQGKYPISL--DAAG 139
            C  C +IGH+   C  R      P       P AL  Q  TI NN N W+ D+GAS H+T D+S +       AG+D V + +GST+ +   G+  L +  T       ++ ++P L  NL S+ K+    PIS+  DA G
Sbjct:  283 CQICGKIGHIAINCWHRCNFKYAPT--NTRSPQALQAQ--TIPNNSNEWILDTGASAHLTPDISNVQ-YPHSYAGQDSVSIANGSTVPIQNSGQGILPLPDTPRKLYLRKILHVPSLAQNLLSVSKLTADNPISIKFDANG 418          
BLAST of mRNA_H-paniculata_contig45354.11395.1 vs. uniprot
Match: A0A2N9F8M1_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9F8M1_FAGSY)

HSP 1 Score: 60.8 bits (146), Expect = 7.270e-8
Identity = 40/128 (31.25%), Postives = 64/128 (50.00%), Query Frame = 0
Query:    2 CHRCDQIGHVHTQCTARVTLSTD-PNPPQCGLPVA-LTNQNPTINNGNIWVSDSGASNHMTNDLSKIYDLRKPVAGEDVVMLGDGSTLVVDLVGKLHLIIHSTTDVPATLEVSYLPELNFNLFSLHKI 127
            C  C ++GH    C  R+  +    NPP     +A  +N N T   G  W++DSGAS+H+T DL+ +     P  G + V +G+G  L +  +G   L  H+   +     V ++P +  NL S+HK+
Sbjct:  318 CQICGKLGHYAIDCYHRMDFAYQGKNPPTKLAAMANASNLNMTQGTGETWLTDSGASDHITADLNNLNQ-PTPFKGPEQVSVGNGQNLPIQNIGNTQL--HTKLSLFKLRNVLHVPRIASNLLSVHKL 442          
BLAST of mRNA_H-paniculata_contig45354.11395.1 vs. uniprot
Match: A0A2N9HVC4_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HVC4_FAGSY)

HSP 1 Score: 60.5 bits (145), Expect = 9.880e-8
Identity = 40/128 (31.25%), Postives = 64/128 (50.00%), Query Frame = 0
Query:    2 CHRCDQIGHVHTQCTARVTLSTD-PNPPQCGLPVA-LTNQNPTINNGNIWVSDSGASNHMTNDLSKIYDLRKPVAGEDVVMLGDGSTLVVDLVGKLHLIIHSTTDVPATLEVSYLPELNFNLFSLHKI 127
            C  C ++GH    C  R+  +    NPP     +A  +N N T   G  W++DSGAS+H+T DL+ +     P  G + V +G+G  L +  +G   L  H+   +     V ++P +  NL S+HK+
Sbjct:  318 CQICGKLGHYAIYCYHRMDFAYQGKNPPTKLAAMANASNLNMTQGTGETWLTDSGASDHITADLNNLNQ-PTPFKGPEQVSVGNGQNLPIQNIGNTQL--HTKLSLFKLRNVLHVPRIASNLLSVHKL 442          
BLAST of mRNA_H-paniculata_contig45354.11395.1 vs. uniprot
Match: A0A5N6NBX7_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NBX7_9ASTR)

HSP 1 Score: 60.5 bits (145), Expect = 9.940e-8
Identity = 44/147 (29.93%), Postives = 72/147 (48.98%), Query Frame = 0
Query:    1 RCHRCDQIGHVHTQCTARVTLSTDPNPPQC----GLPVALTNQNPTINNGNIWVSDSGASNHMTNDLSKIYDLRKPVAGEDVVMLGDGSTLVVDLVGKLHLIIHSTTDVPATLE-VSYLPELNFNLFSLHKIQGKYPISLDAAGTHI 142
            +C  C   GH  T CTA         PP        P A      + N+   W+ D+GASNH+TNDLS +  L  P  G D +++G+GS+L +  +G   ++I   ++VP  L+ V  +P ++ N+ S+ ++    P+ +     H 
Sbjct:  584 KCQWCFTKGHSLTTCTAFKKAHPHITPPSFPKLNSKPQAHMAATTSANSTPAWLFDTGASNHVTNDLS-VLSLHNPYDGTDDLIIGNGSSLPITHIGSTTILI---SNVPVHLQHVLCVPLISRNIISISRLCIDNPLLISFFSCHF 726          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig45354.11395.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6D2JUM8_9BRAS1.330e-834.25Integrase catalytic domain-containing protein n=1 ... [more]
A0A6D2KMT9_9BRAS1.550e-834.25Integrase catalytic domain-containing protein n=1 ... [more]
A0A5E4G702_PRUDU2.000e-829.33PREDICTED: Retrovirus-related Pol poly from (Fragm... [more]
A0A2I0VFW7_9ASPA3.840e-833.58Retrovirus-related Pol polyprotein from transposon... [more]
A0A1J3J5Y3_NOCCA4.570e-832.87gag_pre-integrs domain-containing protein n=1 Tax=... [more]
A0A1J3D5H7_NOCCA5.000e-831.08Uncharacterized protein (Fragment) n=1 Tax=Noccaea... [more]
A0A2I0VGA3_9ASPA5.220e-834.04Retrovirus-related Pol polyprotein from transposon... [more]
A0A2N9F8M1_FAGSY7.270e-831.25Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A2N9HVC4_FAGSY9.880e-831.25Integrase catalytic domain-containing protein n=1 ... [more]
A0A5N6NBX7_9ASTR9.940e-829.93Integrase catalytic domain-containing protein n=1 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig45354contigH-paniculata_contig45354:578..1498 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig45354.11395.1mRNA_H-paniculata_contig45354.11395.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig45354 578..1498 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig45354.11395.1 ID=prot_H-paniculata_contig45354.11395.1|Name=mRNA_H-paniculata_contig45354.11395.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=154bp
RCHRCDQIGHVHTQCTARVTLSTDPNPPQCGLPVALTNQNPTINNGNIWV
SDSGASNHMTNDLSKIYDLRKPVAGEDVVMLGDGSTLVVDLVGKLHLIIH
STTDVPATLEVSYLPELNFNLFSLHKIQGKYPISLDAAGTHINNKLSFPR
KNTG
back to top