prot_H-paniculata_contig45173.11360.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig45173.11360.1
Unique Nameprot_H-paniculata_contig45173.11360.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length63
Homology
BLAST of mRNA_H-paniculata_contig45173.11360.1 vs. uniprot
Match: A0A443RUL6_9ACAR (Integrase core domain protein-like protein (Fragment) n=1 Tax=Leptotrombidium deliense TaxID=299467 RepID=A0A443RUL6_9ACAR)

HSP 1 Score: 57.4 bits (137), Expect = 4.180e-8
Identity = 26/62 (41.94%), Postives = 41/62 (66.13%), Query Frame = 0
Query:    2 LLSVAANQDWELRHIDFEQAYLQAPNDQEIFVKIPVKYREIPGAVGRLDKAIYRLVQAGRCW 63
            +L++AA++D EL   D + A+L    ++EIF++ P+ Y +  G V RL K++Y L QA RCW
Sbjct:   87 ILAIAAHEDMELVQFDVKTAFLHGELEEEIFMEQPIGYNDNSGRVCRLQKSLYGLKQAPRCW 148          
BLAST of mRNA_H-paniculata_contig45173.11360.1 vs. uniprot
Match: A0A6A3D4S6_HIBSY (WD40/YVTN repeat-like-containing domain,Bromodomain isoform 3 n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3D4S6_HIBSY)

HSP 1 Score: 55.8 bits (133), Expect = 1.650e-7
Identity = 26/63 (41.27%), Postives = 40/63 (63.49%), Query Frame = 0
Query:    1 MLLSVAANQDWELRHIDFEQAYLQAPNDQEIFVKIPVKYREIPGAVGRLDKAIYRLVQAGRCW 63
            +LLS+AAN DW L H+D + A+L     +E+++ IP ++ E    V RL K++Y L Q+ R W
Sbjct:  294 VLLSLAANLDWPLTHLDVKNAFLNGELAEEVYMDIPSRFEEEKDHVCRLKKSLYGLKQSLRAW 356          
BLAST of mRNA_H-paniculata_contig45173.11360.1 vs. uniprot
Match: A0A438J8I4_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438J8I4_VITVI)

HSP 1 Score: 55.5 bits (132), Expect = 1.750e-7
Identity = 29/65 (44.62%), Postives = 45/65 (69.23%), Query Frame = 0
Query:    1 MLLSVAANQDWELRHIDFEQAYLQAPNDQEIFVKIPVKYR-EIPGA-VGRLDKAIYRLVQAGRCW 63
            +LLS+AAN DWEL+  D + A+L    ++EI+++IP+ +R E+ G  V +L KA+Y L Q+ R W
Sbjct:  101 ILLSLAANYDWELQQYDVKNAFLHGDLEEEIYMEIPLGFRAELKGKRVCKLKKALYGLKQSPRTW 165          
BLAST of mRNA_H-paniculata_contig45173.11360.1 vs. uniprot
Match: A0A438E865_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438E865_VITVI)

HSP 1 Score: 55.5 bits (132), Expect = 2.210e-7
Identity = 29/65 (44.62%), Postives = 45/65 (69.23%), Query Frame = 0
Query:    1 MLLSVAANQDWELRHIDFEQAYLQAPNDQEIFVKIPVKYR-EIPGA-VGRLDKAIYRLVQAGRCW 63
            +LLS+AAN DWEL+  D + A+L    ++EI+++IP+ +R E+ G  V +L KA+Y L Q+ R W
Sbjct:  336 ILLSLAANYDWELQRYDVKNAFLHGDLEEEIYMEIPLGFRAELKGKRVCKLKKALYGLKQSPRTW 400          
BLAST of mRNA_H-paniculata_contig45173.11360.1 vs. uniprot
Match: A0A5D3BEZ6_CUCME (Putative mitochondrial protein n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5D3BEZ6_CUCME)

HSP 1 Score: 55.1 bits (131), Expect = 3.060e-7
Identity = 27/65 (41.54%), Postives = 41/65 (63.08%), Query Frame = 0
Query:    1 MLLSVAANQDWELRHIDFEQAYLQAPNDQEIFVKIPVKY--REIPGAVGRLDKAIYRLVQAGRCW 63
            ++LSVA  Q+W LR +DF  A+L    D+ +++  P +Y    +PG + +L+KAIY L QA R W
Sbjct:  360 VVLSVALAQNWSLRQLDFNNAFLNGKLDEIVYMAQPPRYVNSSLPGYICKLNKAIYGLKQALRAW 424          
BLAST of mRNA_H-paniculata_contig45173.11360.1 vs. uniprot
Match: A0A2U1PRM3_ARTAN (Ribonuclease H-like domain, Reverse transcriptase, RNA-dependent DNA polymerase n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1PRM3_ARTAN)

HSP 1 Score: 55.1 bits (131), Expect = 3.080e-7
Identity = 28/65 (43.08%), Postives = 40/65 (61.54%), Query Frame = 0
Query:    1 MLLSVAANQDWELRHIDFEQAYLQAPNDQEIFVKIPVKY--REIPGAVGRLDKAIYRLVQAGRCW 63
            +LL++AAN  WE+ H+D + A+L     +E++V  P  +  RE  G V RL KA+Y L QA R W
Sbjct:  716 LLLAIAANNKWEVHHLDVKSAFLHGDLKEEVYVSQPEGFIKRENSGKVYRLIKALYGLRQAPRAW 780          
BLAST of mRNA_H-paniculata_contig45173.11360.1 vs. uniprot
Match: A0A6D2IRE7_9BRAS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2IRE7_9BRAS)

HSP 1 Score: 54.3 bits (129), Expect = 5.640e-7
Identity = 28/64 (43.75%), Postives = 41/64 (64.06%), Query Frame = 0
Query:    1 MLLSVAANQDWELRHIDFEQAYLQAPNDQEIFVKIPVKYREI-PGAVGRLDKAIYRLVQAGRCW 63
            +L  VAANQ WE+  +D   A+L    ++E+++K+P  +R   PG V RL K++Y L QA RCW
Sbjct:  148 VLRLVAANQ-WEVFQMDVNNAFLHGDLEEEVYMKLPPGFRHTHPGKVCRLQKSLYGLKQAPRCW 210          
BLAST of mRNA_H-paniculata_contig45173.11360.1 vs. uniprot
Match: A0A2U1P6C5_ARTAN (Ribonuclease H-like domain, Reverse transcriptase, RNA-dependent DNA polymerase n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1P6C5_ARTAN)

HSP 1 Score: 54.3 bits (129), Expect = 5.700e-7
Identity = 27/65 (41.54%), Postives = 40/65 (61.54%), Query Frame = 0
Query:    1 MLLSVAANQDWELRHIDFEQAYLQAPNDQEIFVKIPVKY--REIPGAVGRLDKAIYRLVQAGRCW 63
            +LL++AAN  WE+ H+D + A+L     +E++V  P  +  +E  G V RL KA+Y L QA R W
Sbjct:  252 LLLAIAANNKWEVHHLDVKSAFLHGDLKEEVYVSQPEGFIEKENSGKVYRLIKALYGLKQAPRAW 316          
BLAST of mRNA_H-paniculata_contig45173.11360.1 vs. uniprot
Match: A0A438E7T4_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438E7T4_VITVI)

HSP 1 Score: 54.3 bits (129), Expect = 5.720e-7
Identity = 27/65 (41.54%), Postives = 42/65 (64.62%), Query Frame = 0
Query:    1 MLLSVAANQDWELRHIDFEQAYLQAPNDQEIFVKIP--VKYREIPGAVGRLDKAIYRLVQAGRCW 63
            +LLSVAAN DW L  +D + A+L    ++E+++KIP  ++  E  G V +L K++Y L Q+ R W
Sbjct:  445 VLLSVAANLDWNLHQLDVKNAFLNGELEEEVYMKIPPSMETPENSGKVCKLRKSLYSLKQSPRAW 509          
BLAST of mRNA_H-paniculata_contig45173.11360.1 vs. uniprot
Match: A0A2U1LZW0_ARTAN (Ribonuclease H-like domain, Reverse transcriptase, RNA-dependent DNA polymerase n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1LZW0_ARTAN)

HSP 1 Score: 54.3 bits (129), Expect = 5.750e-7
Identity = 27/65 (41.54%), Postives = 40/65 (61.54%), Query Frame = 0
Query:    1 MLLSVAANQDWELRHIDFEQAYLQAPNDQEIFVKIPVKY--REIPGAVGRLDKAIYRLVQAGRCW 63
            +LL++AAN  WE+ H+D + A+L     +E++V  P  +  +E  G V RL KA+Y L QA R W
Sbjct:  651 LLLAIAANNKWEVHHLDVKSAFLHGDLKEEVYVSQPEGFIKKENSGKVYRLIKALYGLKQAPRAW 715          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig45173.11360.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A443RUL6_9ACAR4.180e-841.94Integrase core domain protein-like protein (Fragme... [more]
A0A6A3D4S6_HIBSY1.650e-741.27WD40/YVTN repeat-like-containing domain,Bromodomai... [more]
A0A438J8I4_VITVI1.750e-744.62Retrovirus-related Pol polyprotein from transposon... [more]
A0A438E865_VITVI2.210e-744.62Retrovirus-related Pol polyprotein from transposon... [more]
A0A5D3BEZ6_CUCME3.060e-741.54Putative mitochondrial protein n=1 Tax=Cucumis mel... [more]
A0A2U1PRM3_ARTAN3.080e-743.08Ribonuclease H-like domain, Reverse transcriptase,... [more]
A0A6D2IRE7_9BRAS5.640e-743.75Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2U1P6C5_ARTAN5.700e-741.54Ribonuclease H-like domain, Reverse transcriptase,... [more]
A0A438E7T4_VITVI5.720e-741.54Retrovirus-related Pol polyprotein from transposon... [more]
A0A2U1LZW0_ARTAN5.750e-741.54Ribonuclease H-like domain, Reverse transcriptase,... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 1..63
e-value: 4.1E-11
score: 43.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig45173contigH-paniculata_contig45173:1365..1553 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig45173.11360.1mRNA_H-paniculata_contig45173.11360.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig45173 1362..1553 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig45173.11360.1 ID=prot_H-paniculata_contig45173.11360.1|Name=mRNA_H-paniculata_contig45173.11360.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=63bp
MLLSVAANQDWELRHIDFEQAYLQAPNDQEIFVKIPVKYREIPGAVGRLD
KAIYRLVQAGRCW
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2