mRNA_H-paniculata_contig45173.11360.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig45173.11360.1
Unique NamemRNA_H-paniculata_contig45173.11360.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig45173.11360.1 vs. uniprot
Match: A0A2N5T525_9BASI (Uncharacterized protein n=1 Tax=Puccinia coronata f. sp. avenae TaxID=200324 RepID=A0A2N5T525_9BASI)

HSP 1 Score: 62.8 bits (151), Expect = 6.180e-10
Identity = 30/64 (46.88%), Postives = 40/64 (62.50%), Query Frame = 1
Query:    1 KMLLSVAANQDWELRHIDFEQAYLQAPNDQEIFVKIPVKYREIPGAVGRLDKAIYRLVQAGRCW 192
            ++LL+VAA  DW +   DF  AYL +P D+EI++K P      PG   RL+KA+Y   QA RCW
Sbjct: 1176 RLLLTVAAANDWPVHSFDFVAAYLNSPIDEEIWIKPPEGMTVPPGHALRLEKALYGTRQAARCW 1239          
BLAST of mRNA_H-paniculata_contig45173.11360.1 vs. uniprot
Match: A0A2N5TGH8_9BASI (Uncharacterized protein n=1 Tax=Puccinia coronata f. sp. avenae TaxID=200324 RepID=A0A2N5TGH8_9BASI)

HSP 1 Score: 60.5 bits (145), Expect = 4.010e-9
Identity = 29/64 (45.31%), Postives = 40/64 (62.50%), Query Frame = 1
Query:    1 KMLLSVAANQDWELRHIDFEQAYLQAPNDQEIFVKIPVKYREIPGAVGRLDKAIYRLVQAGRCW 192
            ++LL+VAA  DW +   DF  AYL +P D+E++VK P   +   G   RL+KA+Y   QA RCW
Sbjct:  850 RLLLTVAAANDWPVHSFDFVAAYLNSPIDEEVWVKPPEGMQVPAGHALRLEKALYGTRQAARCW 913          
BLAST of mRNA_H-paniculata_contig45173.11360.1 vs. uniprot
Match: A0A8H7NVE6_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Postia placenta TaxID=104341 RepID=A0A8H7NVE6_9APHY)

HSP 1 Score: 57.0 bits (136), Expect = 6.660e-8
Identity = 29/67 (43.28%), Postives = 44/67 (65.67%), Query Frame = 1
Query:    1 KMLLSVAANQDWELRHIDFEQAYLQAPNDQEIFVKIPVKYREIPGA---VGRLDKAIYRLVQAGRCW 192
            +++L++AA  DWE+  IDF+ AYL    D+ I+++ P  + E+PG    + RL KA+Y L QAGR W
Sbjct:  314 RLVLALAAANDWEVHQIDFKNAYLNGDLDETIYMRQPPGF-EVPGREDWIWRLLKALYGLKQAGRLW 379          
BLAST of mRNA_H-paniculata_contig45173.11360.1 vs. uniprot
Match: A0A438J8I4_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438J8I4_VITVI)

HSP 1 Score: 56.2 bits (134), Expect = 9.560e-8
Identity = 29/66 (43.94%), Postives = 46/66 (69.70%), Query Frame = 1
Query:    1 KMLLSVAANQDWELRHIDFEQAYLQAPNDQEIFVKIPVKYR-EIPGA-VGRLDKAIYRLVQAGRCW 192
            ++LLS+AAN DWEL+  D + A+L    ++EI+++IP+ +R E+ G  V +L KA+Y L Q+ R W
Sbjct:  100 RILLSLAANYDWELQQYDVKNAFLHGDLEEEIYMEIPLGFRAELKGKRVCKLKKALYGLKQSPRTW 165          
BLAST of mRNA_H-paniculata_contig45173.11360.1 vs. uniprot
Match: A0A438E865_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438E865_VITVI)

HSP 1 Score: 56.2 bits (134), Expect = 1.230e-7
Identity = 29/66 (43.94%), Postives = 46/66 (69.70%), Query Frame = 1
Query:    1 KMLLSVAANQDWELRHIDFEQAYLQAPNDQEIFVKIPVKYR-EIPGA-VGRLDKAIYRLVQAGRCW 192
            ++LLS+AAN DWEL+  D + A+L    ++EI+++IP+ +R E+ G  V +L KA+Y L Q+ R W
Sbjct:  335 RILLSLAANYDWELQRYDVKNAFLHGDLEEEIYMEIPLGFRAELKGKRVCKLKKALYGLKQSPRTW 400          
BLAST of mRNA_H-paniculata_contig45173.11360.1 vs. uniprot
Match: A0A438E7T4_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438E7T4_VITVI)

HSP 1 Score: 56.2 bits (134), Expect = 1.250e-7
Identity = 28/66 (42.42%), Postives = 43/66 (65.15%), Query Frame = 1
Query:    1 KMLLSVAANQDWELRHIDFEQAYLQAPNDQEIFVKIP--VKYREIPGAVGRLDKAIYRLVQAGRCW 192
            K+LLSVAAN DW L  +D + A+L    ++E+++KIP  ++  E  G V +L K++Y L Q+ R W
Sbjct:  444 KVLLSVAANLDWNLHQLDVKNAFLNGELEEEVYMKIPPSMETPENSGKVCKLRKSLYSLKQSPRAW 509          
BLAST of mRNA_H-paniculata_contig45173.11360.1 vs. uniprot
Match: A0A2U1PRM3_ARTAN (Ribonuclease H-like domain, Reverse transcriptase, RNA-dependent DNA polymerase n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1PRM3_ARTAN)

HSP 1 Score: 55.8 bits (133), Expect = 1.720e-7
Identity = 28/66 (42.42%), Postives = 41/66 (62.12%), Query Frame = 1
Query:    1 KMLLSVAANQDWELRHIDFEQAYLQAPNDQEIFVKIPVKY--REIPGAVGRLDKAIYRLVQAGRCW 192
            ++LL++AAN  WE+ H+D + A+L     +E++V  P  +  RE  G V RL KA+Y L QA R W
Sbjct:  715 RLLLAIAANNKWEVHHLDVKSAFLHGDLKEEVYVSQPEGFIKRENSGKVYRLIKALYGLRQAPRAW 780          
BLAST of mRNA_H-paniculata_contig45173.11360.1 vs. uniprot
Match: A0A6A3D4S6_HIBSY (WD40/YVTN repeat-like-containing domain,Bromodomain isoform 3 n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3D4S6_HIBSY)

HSP 1 Score: 55.8 bits (133), Expect = 1.720e-7
Identity = 26/63 (41.27%), Postives = 40/63 (63.49%), Query Frame = 1
Query:    4 MLLSVAANQDWELRHIDFEQAYLQAPNDQEIFVKIPVKYREIPGAVGRLDKAIYRLVQAGRCW 192
            +LLS+AAN DW L H+D + A+L     +E+++ IP ++ E    V RL K++Y L Q+ R W
Sbjct:  294 VLLSLAANLDWPLTHLDVKNAFLNGELAEEVYMDIPSRFEEEKDHVCRLKKSLYGLKQSLRAW 356          
BLAST of mRNA_H-paniculata_contig45173.11360.1 vs. uniprot
Match: A0A2U1P6C5_ARTAN (Ribonuclease H-like domain, Reverse transcriptase, RNA-dependent DNA polymerase n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1P6C5_ARTAN)

HSP 1 Score: 55.1 bits (131), Expect = 3.180e-7
Identity = 27/66 (40.91%), Postives = 41/66 (62.12%), Query Frame = 1
Query:    1 KMLLSVAANQDWELRHIDFEQAYLQAPNDQEIFVKIPVKY--REIPGAVGRLDKAIYRLVQAGRCW 192
            ++LL++AAN  WE+ H+D + A+L     +E++V  P  +  +E  G V RL KA+Y L QA R W
Sbjct:  251 RLLLAIAANNKWEVHHLDVKSAFLHGDLKEEVYVSQPEGFIEKENSGKVYRLIKALYGLKQAPRAW 316          
BLAST of mRNA_H-paniculata_contig45173.11360.1 vs. uniprot
Match: A0A5D3BEZ6_CUCME (Putative mitochondrial protein n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5D3BEZ6_CUCME)

HSP 1 Score: 55.1 bits (131), Expect = 3.190e-7
Identity = 27/65 (41.54%), Postives = 41/65 (63.08%), Query Frame = 1
Query:    4 MLLSVAANQDWELRHIDFEQAYLQAPNDQEIFVKIPVKY--REIPGAVGRLDKAIYRLVQAGRCW 192
            ++LSVA  Q+W LR +DF  A+L    D+ +++  P +Y    +PG + +L+KAIY L QA R W
Sbjct:  360 VVLSVALAQNWSLRQLDFNNAFLNGKLDEIVYMAQPPRYVNSSLPGYICKLNKAIYGLKQALRAW 424          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig45173.11360.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2N5T525_9BASI6.180e-1046.88Uncharacterized protein n=1 Tax=Puccinia coronata ... [more]
A0A2N5TGH8_9BASI4.010e-945.31Uncharacterized protein n=1 Tax=Puccinia coronata ... [more]
A0A8H7NVE6_9APHY6.660e-843.28Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A438J8I4_VITVI9.560e-843.94Retrovirus-related Pol polyprotein from transposon... [more]
A0A438E865_VITVI1.230e-743.94Retrovirus-related Pol polyprotein from transposon... [more]
A0A438E7T4_VITVI1.250e-742.42Retrovirus-related Pol polyprotein from transposon... [more]
A0A2U1PRM3_ARTAN1.720e-742.42Ribonuclease H-like domain, Reverse transcriptase,... [more]
A0A6A3D4S6_HIBSY1.720e-741.27WD40/YVTN repeat-like-containing domain,Bromodomai... [more]
A0A2U1P6C5_ARTAN3.180e-740.91Ribonuclease H-like domain, Reverse transcriptase,... [more]
A0A5D3BEZ6_CUCME3.190e-741.54Putative mitochondrial protein n=1 Tax=Cucumis mel... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig45173contigH-paniculata_contig45173:1362..1553 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size192
Cds size189
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930355.5729387-UTR-H-paniculata_contig45173:1361..13641622930355.5729387-UTR-H-paniculata_contig45173:1361..1364Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig45173 1362..1364 +
1691481255.1931407-UTR-H-paniculata_contig45173:1361..13641691481255.1931407-UTR-H-paniculata_contig45173:1361..1364Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig45173 1362..1364 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930355.5854702-CDS-H-paniculata_contig45173:1364..15531622930355.5854702-CDS-H-paniculata_contig45173:1364..1553Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45173 1365..1553 +
1691481255.2143145-CDS-H-paniculata_contig45173:1364..15531691481255.2143145-CDS-H-paniculata_contig45173:1364..1553Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45173 1365..1553 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig45173.11360.1prot_H-paniculata_contig45173.11360.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig45173 1365..1553 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig45173.11360.1

>prot_H-paniculata_contig45173.11360.1 ID=prot_H-paniculata_contig45173.11360.1|Name=mRNA_H-paniculata_contig45173.11360.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=63bp
MLLSVAANQDWELRHIDFEQAYLQAPNDQEIFVKIPVKYREIPGAVGRLD
KAIYRLVQAGRCW
back to top

mRNA from alignment at H-paniculata_contig45173:1362..1553+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig45173.11360.1 ID=mRNA_H-paniculata_contig45173.11360.1|Name=mRNA_H-paniculata_contig45173.11360.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=192bp|location=Sequence derived from alignment at H-paniculata_contig45173:1362..1553+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAATGCTGTTGTCGGTTGCGGCAAACCAGGACTGGGAGCTTCGGCACAT CGACTTTGAACAAGCGTATCTGCAGGCGCCCAACGACCAGGAGATTTTCG TCAAAATTCCCGTAAAATACCGGGAGATCCCAGGAGCGGTGGGGCGCCTC GACAAGGCAATCTACCGATTGGTGCAAGCCGGCAGATGCTGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig45173:1362..1553+

>mRNA_H-paniculata_contig45173.11360.1 ID=mRNA_H-paniculata_contig45173.11360.1|Name=mRNA_H-paniculata_contig45173.11360.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=378bp|location=Sequence derived from alignment at H-paniculata_contig45173:1362..1553+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTGTTGTCGGTTGCGGCAAACCAGGACTGGGAGCTTCGGCACATCGA
CTTTGAACAAGCGTATCTGCAGGCGCCCAACGACCAGGAGATTTTCGTCA
AAATTCCCGTAAAATACCGGGAGATCCCAGGAGCGGTGGGGCGCCTCGAC
AAGGCAATCTACCGATTGGTGCAAGCCGGCAGATGCTGGATGCTGTTGTC
GGTTGCGGCAAACCAGGACTGGGAGCTTCGGCACATCGACTTTGAACAAG
CGTATCTGCAGGCGCCCAACGACCAGGAGATTTTCGTCAAAATTCCCGTA
AAATACCGGGAGATCCCAGGAGCGGTGGGGCGCCTCGACAAGGCAATCTA
CCGATTGGTGCAAGCCGGCAGATGCTGG
back to top