mRNA_H-paniculata_contig45119.11353.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig45119.11353.1 vs. uniprot
Match: A0A4Y2LAF7_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2LAF7_ARAVE) HSP 1 Score: 118 bits (296), Expect = 1.840e-29 Identity = 60/125 (48.00%), Postives = 78/125 (62.40%), Query Frame = 1
Query: 4 PQQTSVAERSWRSVLGMTRSKMITANMDRRYWAEATRAAMYCLNRASTRPHSGGTPYETWHGTAPKLEHLRVFGCTAYVMLQSQQRRKRDDKAWVGVFLGYDEDNPSYRIYNSENKSVQLSRNVR 378
PQQ V+ER R+++ M R + AN+ +R+WAEA A Y NR T+P TPY W P L H+RVFGC AY +Q Q+RRK DDKA G+FLGYD + YRIY +NK + +SR V+
Sbjct: 105 PQQNGVSERKNRTLIEMARCLLSDANLSQRFWAEAAMTATYLQNRLPTKPKRK-TPYVLWANRKPDLSHIRVFGCKAYACIQKQKRRKLDDKAVEGIFLGYDYRSKGYRIYLGDNK-IMISRTVK 227
BLAST of mRNA_H-paniculata_contig45119.11353.1 vs. uniprot
Match: A0A251UIF2_HELAN (Integrase catalytic domain-containing protein n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251UIF2_HELAN) HSP 1 Score: 117 bits (294), Expect = 3.870e-28 Identity = 56/127 (44.09%), Postives = 78/127 (61.42%), Query Frame = 1
Query: 4 PQQTSVAERSWRSVLGMTRSKMITANMDRRYWAEATRAAMYCLNRASTRPHSGGTPYETWHGTAPKLEHLRVFGCTAYVMLQSQQRRKRDDKAWVGVFLGYDEDNPSYRIYNSENKSVQLSRNVRCD 384
PQQ VAER R+++ ++RS M + YWAEA A Y LNR T+ TPYE W+G P +EHL+VFGC AYV + Q+R K D K VF+GY E++ Y++YN ++ + +SR+V D
Sbjct: 591 PQQNGVAERKNRTLMELSRSMMNAKELPNCYWAEAVACATYILNRTVTKTRPNITPYEAWNGNKPNVEHLKVFGCLAYVHIPKQRRDKLDKKTEKTVFVGYSENSKGYKLYNPQSNKIIISRDVVFD 717
BLAST of mRNA_H-paniculata_contig45119.11353.1 vs. uniprot
Match: A0A251SKN6_HELAN (Putative zinc finger, CCHC-type n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251SKN6_HELAN) HSP 1 Score: 117 bits (293), Expect = 5.360e-28 Identity = 56/127 (44.09%), Postives = 78/127 (61.42%), Query Frame = 1
Query: 4 PQQTSVAERSWRSVLGMTRSKMITANMDRRYWAEATRAAMYCLNRASTRPHSGGTPYETWHGTAPKLEHLRVFGCTAYVMLQSQQRRKRDDKAWVGVFLGYDEDNPSYRIYNSENKSVQLSRNVRCD 384
PQQ VAER R+++ ++RS M + YWAEA A Y LNR T+ TPYE W+G P +EHL+VFGC AYV + Q+R K D K VF+GY E++ Y++YN ++ + +SR+V D
Sbjct: 1343 PQQNGVAERKNRTLMELSRSMMNAKELPTCYWAEAVACATYILNRTVTKTRPNITPYEAWNGNKPNVEHLKVFGCLAYVHIPKQRRDKLDKKTEKTVFVGYSENSKGYKLYNPQSNKIIISRDVVFD 1469
BLAST of mRNA_H-paniculata_contig45119.11353.1 vs. uniprot
Match: A0A1R3HQR7_COCAP (Integrase catalytic domain-containing protein n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3HQR7_COCAP) HSP 1 Score: 116 bits (290), Expect = 1.320e-27 Identity = 54/127 (42.52%), Postives = 76/127 (59.84%), Query Frame = 1
Query: 4 PQQTSVAERSWRSVLGMTRSKMITANMDRRYWAEATRAAMYCLNRASTRPHSGGTPYETWHGTAPKLEHLRVFGCTAYVMLQSQQRRKRDDKAWVGVFLGYDEDNPSYRIYNSENKSVQLSRNVRCD 384
PQQ +V+ER R+ + M R + + +++WAEA A+Y LNR T+ TPYE W G P + HL+VFGC Y + + +R K D+KA +GVF+GY + YRIYN V LSR+V+ D
Sbjct: 390 PQQNAVSERKNRTAMDMARCLLFEKKLPKKFWAEAVNTAVYLLNRLPTKALKNLTPYEGWSGAKPSVTHLKVFGCVCYTWIPNVKRGKLDEKAQIGVFVGYSIEVKGYRIYNPTTNKVYLSRDVKFD 516
BLAST of mRNA_H-paniculata_contig45119.11353.1 vs. uniprot
Match: A0A251UNU7_HELAN (Putative zinc finger, CCHC-type n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251UNU7_HELAN) HSP 1 Score: 112 bits (281), Expect = 2.210e-26 Identity = 56/127 (44.09%), Postives = 76/127 (59.84%), Query Frame = 1
Query: 4 PQQTSVAERSWRSVLGMTRSKMITANMDRRYWAEATRAAMYCLNRASTRPHSGGTPYETWHGTAPKLEHLRVFGCTAYVMLQSQQRRKRDDKAWVGVFLGYDEDNPSYRIYNSENKSVQLSRNVRCD 384
PQQ VAER R+++ ++RS M + YWAEA A Y LNR T+ TPYE W+G+ P +EHLRVFGC AYV + Q+R K + K VF+GY + + YR+YN + +SR+V D
Sbjct: 954 PQQNGVAERKNRTLMELSRSMMNAKQLSDCYWAEAIACATYILNRTVTKTRPDTTPYEAWNGSKPNVEHLRVFGCLAYVHIPKQRRDKLNMKTEKTVFVGYSDRSKGYRLYNPLTNKIIISRDVVFD 1080
BLAST of mRNA_H-paniculata_contig45119.11353.1 vs. uniprot
Match: A0A2M4CK12_ANODA (Putative pol polyprotein (Fragment) n=1 Tax=Anopheles darlingi TaxID=43151 RepID=A0A2M4CK12_ANODA) HSP 1 Score: 112 bits (279), Expect = 3.910e-26 Identity = 52/125 (41.60%), Postives = 77/125 (61.60%), Query Frame = 1
Query: 4 PQQTSVAERSWRSVLGMTRSKMITANMDRRYWAEATRAAMYCLNRASTRPHSGGTPYETWHGTAPKLEHLRVFGCTAYVMLQSQQRRKRDDKAWVGVFLGYDEDNPSYRIYNSENKSVQLSRNVR 378
PQQ VAER RS++ M R + A ++++YWAEA A+Y N + T+P + TPYETWHG PK+ HLR+FGC A+ + +R+K A FLGY D+ +YR+ + + +SR+V+
Sbjct: 134 PQQNGVAERKNRSLIEMVRCMLFDAQLEQKYWAEAMNTAVYLQNISPTKPRNN-TPYETWHGVKPKVNHLRIFGCDAWAHIPKAKRKKLGATAQKLTFLGYSYDHKAYRLLDKTTNEIHISRDVK 257
BLAST of mRNA_H-paniculata_contig45119.11353.1 vs. uniprot
Match: A0A396INR0_MEDTR (Putative RNA-directed DNA polymerase n=1 Tax=Medicago truncatula TaxID=3880 RepID=A0A396INR0_MEDTR) HSP 1 Score: 112 bits (279), Expect = 4.050e-26 Identity = 53/128 (41.41%), Postives = 76/128 (59.38%), Query Frame = 1
Query: 1 TPQQTSVAERSWRSVLGMTRSKMITANMDRRYWAEATRAAMYCLNRASTRPHSGGTPYETWHGTAPKLEHLRVFGCTAYVMLQSQQRRKRDDKAWVGVFLGYDEDNPSYRIYNSENKSVQLSRNVRCD 384
TPQQ V+ER R+V+ M R + + + +WAEA A+Y LNR TR G TP E W G P +HL++FG YV + + +R K DDKA +G+FLGY + YR+YN + K + + R++ D
Sbjct: 618 TPQQNGVSERKNRTVMEMARCLIAEKQLPKSFWAEAVYTAVYLLNRLPTRAVQGKTPIEAWIGVKPSAKHLKIFGSICYVHVVAAKRSKLDDKAEMGIFLGYVASSKGYRVYNLKTKQIVIRRDIDVD 745
BLAST of mRNA_H-paniculata_contig45119.11353.1 vs. uniprot
Match: A0A251TN47_HELAN (Putative zinc finger, CCHC-type n=2 Tax=Helianthus annuus TaxID=4232 RepID=A0A251TN47_HELAN) HSP 1 Score: 111 bits (277), Expect = 7.540e-26 Identity = 54/125 (43.20%), Postives = 75/125 (60.00%), Query Frame = 1
Query: 1 TPQQTSVAERSWRSVLGMTRSKMITANMDRRYWAEATRAAMYCLNRASTRPHSGGTPYETWHGTAPKLEHLRVFGCTAYVMLQSQQRRKRDDKAWVGVFLGYDEDNPSYRIYNSENKSVQLSRNV 375
TPQQ VAER R+++ ++RS + + YWAEA A Y LNRA+T+ TP E W G P ++HLRVFGC AYV + Q R K DDK +F+GY E + Y+++N + +SR+V
Sbjct: 596 TPQQNGVAERKNRTLMELSRSMLKMKELPNTYWAEAVACATYLLNRATTKSVPKLTPQEAWSGKKPNVDHLRVFGCIAYVHIPKQHRSKLDDKTERAIFVGYSEHSKGYKLFNPITHKMIISRDV 720
BLAST of mRNA_H-paniculata_contig45119.11353.1 vs. uniprot
Match: A0A5C7GPV7_9ROSI (Integrase catalytic domain-containing protein n=3 Tax=Acer yangbiense TaxID=1000413 RepID=A0A5C7GPV7_9ROSI) HSP 1 Score: 110 bits (275), Expect = 1.340e-25 Identity = 52/128 (40.62%), Postives = 77/128 (60.16%), Query Frame = 1
Query: 1 TPQQTSVAERSWRSVLGMTRSKMITANMDRRYWAEATRAAMYCLNRASTRPHSGGTPYETWHGTAPKLEHLRVFGCTAYVMLQSQQRRKRDDKAWVGVFLGYDEDNPSYRIYNSENKSVQLSRNVRCD 384
TPQQ V+E+ R+V+ M R M + + +WAEA A+Y LN+ TR G TP E W G P +HL+VFG Y + +R K DDKA +G+FLGY ++ YR++N + K + +SR+++ D
Sbjct: 569 TPQQNGVSEKKNRTVMEMARCLMAEKKLPKNFWAEAVYTAVYLLNKLPTRAVQGKTPIEAWSGVKPSAKHLKVFGSICYSHVADAKRSKLDDKAEMGIFLGYVVNSKGYRVFNLQAKKLIISRDIQVD 696
BLAST of mRNA_H-paniculata_contig45119.11353.1 vs. uniprot
Match: A0A498M2F0_LABRO (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Labeo rohita TaxID=84645 RepID=A0A498M2F0_LABRO) HSP 1 Score: 109 bits (273), Expect = 2.480e-25 Identity = 51/125 (40.80%), Postives = 77/125 (61.60%), Query Frame = 1
Query: 1 TPQQTSVAERSWRSVLGMTRSKMITANMDRRYWAEATRAAMYCLNRASTRPHSGGTPYETWHGTAPKLEHLRVFGCTAYVMLQSQQRRKRDDKAWVGVFLGYDEDNPSYRIYNSENKSVQLSRNV 375
TP+Q VAER ++++ RS + A + +++WAEA A+Y NR+ T+ G TP+E W G PK++HLR+FGCT Y + +R+K D KA + LGY + YR+Y+S+ V SR+V
Sbjct: 44 TPEQNGVAERMNKTLMETVRSMLADAKLPQKFWAEALSTAVYLRNRSPTKSVKGMTPFEAWTGEKPKVDHLRIFGCTVYAHVPKDERKKLDPKAKKCILLGYGTETKGYRLYDSKLAKVFFSRDV 168 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig45119.11353.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig45119.11353.1 >prot_H-paniculata_contig45119.11353.1 ID=prot_H-paniculata_contig45119.11353.1|Name=mRNA_H-paniculata_contig45119.11353.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=129bp TPQQTSVAERSWRSVLGMTRSKMITANMDRRYWAEATRAAMYCLNRASTRback to top mRNA from alignment at H-paniculata_contig45119:1008..1394- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig45119.11353.1 ID=mRNA_H-paniculata_contig45119.11353.1|Name=mRNA_H-paniculata_contig45119.11353.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=387bp|location=Sequence derived from alignment at H-paniculata_contig45119:1008..1394- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig45119:1008..1394- >mRNA_H-paniculata_contig45119.11353.1 ID=mRNA_H-paniculata_contig45119.11353.1|Name=mRNA_H-paniculata_contig45119.11353.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=774bp|location=Sequence derived from alignment at H-paniculata_contig45119:1008..1394- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |