mRNA_H-paniculata_contig45119.11353.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig45119.11353.1
Unique NamemRNA_H-paniculata_contig45119.11353.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig45119.11353.1 vs. uniprot
Match: A0A4Y2LAF7_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2LAF7_ARAVE)

HSP 1 Score: 118 bits (296), Expect = 1.840e-29
Identity = 60/125 (48.00%), Postives = 78/125 (62.40%), Query Frame = 1
Query:    4 PQQTSVAERSWRSVLGMTRSKMITANMDRRYWAEATRAAMYCLNRASTRPHSGGTPYETWHGTAPKLEHLRVFGCTAYVMLQSQQRRKRDDKAWVGVFLGYDEDNPSYRIYNSENKSVQLSRNVR 378
            PQQ  V+ER  R+++ M R  +  AN+ +R+WAEA   A Y  NR  T+P    TPY  W    P L H+RVFGC AY  +Q Q+RRK DDKA  G+FLGYD  +  YRIY  +NK + +SR V+
Sbjct:  105 PQQNGVSERKNRTLIEMARCLLSDANLSQRFWAEAAMTATYLQNRLPTKPKRK-TPYVLWANRKPDLSHIRVFGCKAYACIQKQKRRKLDDKAVEGIFLGYDYRSKGYRIYLGDNK-IMISRTVK 227          
BLAST of mRNA_H-paniculata_contig45119.11353.1 vs. uniprot
Match: A0A251UIF2_HELAN (Integrase catalytic domain-containing protein n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251UIF2_HELAN)

HSP 1 Score: 117 bits (294), Expect = 3.870e-28
Identity = 56/127 (44.09%), Postives = 78/127 (61.42%), Query Frame = 1
Query:    4 PQQTSVAERSWRSVLGMTRSKMITANMDRRYWAEATRAAMYCLNRASTRPHSGGTPYETWHGTAPKLEHLRVFGCTAYVMLQSQQRRKRDDKAWVGVFLGYDEDNPSYRIYNSENKSVQLSRNVRCD 384
            PQQ  VAER  R+++ ++RS M    +   YWAEA   A Y LNR  T+     TPYE W+G  P +EHL+VFGC AYV +  Q+R K D K    VF+GY E++  Y++YN ++  + +SR+V  D
Sbjct:  591 PQQNGVAERKNRTLMELSRSMMNAKELPNCYWAEAVACATYILNRTVTKTRPNITPYEAWNGNKPNVEHLKVFGCLAYVHIPKQRRDKLDKKTEKTVFVGYSENSKGYKLYNPQSNKIIISRDVVFD 717          
BLAST of mRNA_H-paniculata_contig45119.11353.1 vs. uniprot
Match: A0A251SKN6_HELAN (Putative zinc finger, CCHC-type n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251SKN6_HELAN)

HSP 1 Score: 117 bits (293), Expect = 5.360e-28
Identity = 56/127 (44.09%), Postives = 78/127 (61.42%), Query Frame = 1
Query:    4 PQQTSVAERSWRSVLGMTRSKMITANMDRRYWAEATRAAMYCLNRASTRPHSGGTPYETWHGTAPKLEHLRVFGCTAYVMLQSQQRRKRDDKAWVGVFLGYDEDNPSYRIYNSENKSVQLSRNVRCD 384
            PQQ  VAER  R+++ ++RS M    +   YWAEA   A Y LNR  T+     TPYE W+G  P +EHL+VFGC AYV +  Q+R K D K    VF+GY E++  Y++YN ++  + +SR+V  D
Sbjct: 1343 PQQNGVAERKNRTLMELSRSMMNAKELPTCYWAEAVACATYILNRTVTKTRPNITPYEAWNGNKPNVEHLKVFGCLAYVHIPKQRRDKLDKKTEKTVFVGYSENSKGYKLYNPQSNKIIISRDVVFD 1469          
BLAST of mRNA_H-paniculata_contig45119.11353.1 vs. uniprot
Match: A0A1R3HQR7_COCAP (Integrase catalytic domain-containing protein n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3HQR7_COCAP)

HSP 1 Score: 116 bits (290), Expect = 1.320e-27
Identity = 54/127 (42.52%), Postives = 76/127 (59.84%), Query Frame = 1
Query:    4 PQQTSVAERSWRSVLGMTRSKMITANMDRRYWAEATRAAMYCLNRASTRPHSGGTPYETWHGTAPKLEHLRVFGCTAYVMLQSQQRRKRDDKAWVGVFLGYDEDNPSYRIYNSENKSVQLSRNVRCD 384
            PQQ +V+ER  R+ + M R  +    + +++WAEA   A+Y LNR  T+     TPYE W G  P + HL+VFGC  Y  + + +R K D+KA +GVF+GY  +   YRIYN     V LSR+V+ D
Sbjct:  390 PQQNAVSERKNRTAMDMARCLLFEKKLPKKFWAEAVNTAVYLLNRLPTKALKNLTPYEGWSGAKPSVTHLKVFGCVCYTWIPNVKRGKLDEKAQIGVFVGYSIEVKGYRIYNPTTNKVYLSRDVKFD 516          
BLAST of mRNA_H-paniculata_contig45119.11353.1 vs. uniprot
Match: A0A251UNU7_HELAN (Putative zinc finger, CCHC-type n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251UNU7_HELAN)

HSP 1 Score: 112 bits (281), Expect = 2.210e-26
Identity = 56/127 (44.09%), Postives = 76/127 (59.84%), Query Frame = 1
Query:    4 PQQTSVAERSWRSVLGMTRSKMITANMDRRYWAEATRAAMYCLNRASTRPHSGGTPYETWHGTAPKLEHLRVFGCTAYVMLQSQQRRKRDDKAWVGVFLGYDEDNPSYRIYNSENKSVQLSRNVRCD 384
            PQQ  VAER  R+++ ++RS M    +   YWAEA   A Y LNR  T+     TPYE W+G+ P +EHLRVFGC AYV +  Q+R K + K    VF+GY + +  YR+YN     + +SR+V  D
Sbjct:  954 PQQNGVAERKNRTLMELSRSMMNAKQLSDCYWAEAIACATYILNRTVTKTRPDTTPYEAWNGSKPNVEHLRVFGCLAYVHIPKQRRDKLNMKTEKTVFVGYSDRSKGYRLYNPLTNKIIISRDVVFD 1080          
BLAST of mRNA_H-paniculata_contig45119.11353.1 vs. uniprot
Match: A0A2M4CK12_ANODA (Putative pol polyprotein (Fragment) n=1 Tax=Anopheles darlingi TaxID=43151 RepID=A0A2M4CK12_ANODA)

HSP 1 Score: 112 bits (279), Expect = 3.910e-26
Identity = 52/125 (41.60%), Postives = 77/125 (61.60%), Query Frame = 1
Query:    4 PQQTSVAERSWRSVLGMTRSKMITANMDRRYWAEATRAAMYCLNRASTRPHSGGTPYETWHGTAPKLEHLRVFGCTAYVMLQSQQRRKRDDKAWVGVFLGYDEDNPSYRIYNSENKSVQLSRNVR 378
            PQQ  VAER  RS++ M R  +  A ++++YWAEA   A+Y  N + T+P +  TPYETWHG  PK+ HLR+FGC A+  +   +R+K    A    FLGY  D+ +YR+ +     + +SR+V+
Sbjct:  134 PQQNGVAERKNRSLIEMVRCMLFDAQLEQKYWAEAMNTAVYLQNISPTKPRNN-TPYETWHGVKPKVNHLRIFGCDAWAHIPKAKRKKLGATAQKLTFLGYSYDHKAYRLLDKTTNEIHISRDVK 257          
BLAST of mRNA_H-paniculata_contig45119.11353.1 vs. uniprot
Match: A0A396INR0_MEDTR (Putative RNA-directed DNA polymerase n=1 Tax=Medicago truncatula TaxID=3880 RepID=A0A396INR0_MEDTR)

HSP 1 Score: 112 bits (279), Expect = 4.050e-26
Identity = 53/128 (41.41%), Postives = 76/128 (59.38%), Query Frame = 1
Query:    1 TPQQTSVAERSWRSVLGMTRSKMITANMDRRYWAEATRAAMYCLNRASTRPHSGGTPYETWHGTAPKLEHLRVFGCTAYVMLQSQQRRKRDDKAWVGVFLGYDEDNPSYRIYNSENKSVQLSRNVRCD 384
            TPQQ  V+ER  R+V+ M R  +    + + +WAEA   A+Y LNR  TR   G TP E W G  P  +HL++FG   YV + + +R K DDKA +G+FLGY   +  YR+YN + K + + R++  D
Sbjct:  618 TPQQNGVSERKNRTVMEMARCLIAEKQLPKSFWAEAVYTAVYLLNRLPTRAVQGKTPIEAWIGVKPSAKHLKIFGSICYVHVVAAKRSKLDDKAEMGIFLGYVASSKGYRVYNLKTKQIVIRRDIDVD 745          
BLAST of mRNA_H-paniculata_contig45119.11353.1 vs. uniprot
Match: A0A251TN47_HELAN (Putative zinc finger, CCHC-type n=2 Tax=Helianthus annuus TaxID=4232 RepID=A0A251TN47_HELAN)

HSP 1 Score: 111 bits (277), Expect = 7.540e-26
Identity = 54/125 (43.20%), Postives = 75/125 (60.00%), Query Frame = 1
Query:    1 TPQQTSVAERSWRSVLGMTRSKMITANMDRRYWAEATRAAMYCLNRASTRPHSGGTPYETWHGTAPKLEHLRVFGCTAYVMLQSQQRRKRDDKAWVGVFLGYDEDNPSYRIYNSENKSVQLSRNV 375
            TPQQ  VAER  R+++ ++RS +    +   YWAEA   A Y LNRA+T+     TP E W G  P ++HLRVFGC AYV +  Q R K DDK    +F+GY E +  Y+++N     + +SR+V
Sbjct:  596 TPQQNGVAERKNRTLMELSRSMLKMKELPNTYWAEAVACATYLLNRATTKSVPKLTPQEAWSGKKPNVDHLRVFGCIAYVHIPKQHRSKLDDKTERAIFVGYSEHSKGYKLFNPITHKMIISRDV 720          
BLAST of mRNA_H-paniculata_contig45119.11353.1 vs. uniprot
Match: A0A5C7GPV7_9ROSI (Integrase catalytic domain-containing protein n=3 Tax=Acer yangbiense TaxID=1000413 RepID=A0A5C7GPV7_9ROSI)

HSP 1 Score: 110 bits (275), Expect = 1.340e-25
Identity = 52/128 (40.62%), Postives = 77/128 (60.16%), Query Frame = 1
Query:    1 TPQQTSVAERSWRSVLGMTRSKMITANMDRRYWAEATRAAMYCLNRASTRPHSGGTPYETWHGTAPKLEHLRVFGCTAYVMLQSQQRRKRDDKAWVGVFLGYDEDNPSYRIYNSENKSVQLSRNVRCD 384
            TPQQ  V+E+  R+V+ M R  M    + + +WAEA   A+Y LN+  TR   G TP E W G  P  +HL+VFG   Y  +   +R K DDKA +G+FLGY  ++  YR++N + K + +SR+++ D
Sbjct:  569 TPQQNGVSEKKNRTVMEMARCLMAEKKLPKNFWAEAVYTAVYLLNKLPTRAVQGKTPIEAWSGVKPSAKHLKVFGSICYSHVADAKRSKLDDKAEMGIFLGYVVNSKGYRVFNLQAKKLIISRDIQVD 696          
BLAST of mRNA_H-paniculata_contig45119.11353.1 vs. uniprot
Match: A0A498M2F0_LABRO (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Labeo rohita TaxID=84645 RepID=A0A498M2F0_LABRO)

HSP 1 Score: 109 bits (273), Expect = 2.480e-25
Identity = 51/125 (40.80%), Postives = 77/125 (61.60%), Query Frame = 1
Query:    1 TPQQTSVAERSWRSVLGMTRSKMITANMDRRYWAEATRAAMYCLNRASTRPHSGGTPYETWHGTAPKLEHLRVFGCTAYVMLQSQQRRKRDDKAWVGVFLGYDEDNPSYRIYNSENKSVQLSRNV 375
            TP+Q  VAER  ++++   RS +  A + +++WAEA   A+Y  NR+ T+   G TP+E W G  PK++HLR+FGCT Y  +   +R+K D KA   + LGY  +   YR+Y+S+   V  SR+V
Sbjct:   44 TPEQNGVAERMNKTLMETVRSMLADAKLPQKFWAEALSTAVYLRNRSPTKSVKGMTPFEAWTGEKPKVDHLRIFGCTVYAHVPKDERKKLDPKAKKCILLGYGTETKGYRLYDSKLAKVFFSRDV 168          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig45119.11353.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4Y2LAF7_ARAVE1.840e-2948.00Retrovirus-related Pol polyprotein from transposon... [more]
A0A251UIF2_HELAN3.870e-2844.09Integrase catalytic domain-containing protein n=1 ... [more]
A0A251SKN6_HELAN5.360e-2844.09Putative zinc finger, CCHC-type n=1 Tax=Helianthus... [more]
A0A1R3HQR7_COCAP1.320e-2742.52Integrase catalytic domain-containing protein n=1 ... [more]
A0A251UNU7_HELAN2.210e-2644.09Putative zinc finger, CCHC-type n=1 Tax=Helianthus... [more]
A0A2M4CK12_ANODA3.910e-2641.60Putative pol polyprotein (Fragment) n=1 Tax=Anophe... [more]
A0A396INR0_MEDTR4.050e-2641.41Putative RNA-directed DNA polymerase n=1 Tax=Medic... [more]
A0A251TN47_HELAN7.540e-2643.20Putative zinc finger, CCHC-type n=2 Tax=Helianthus... [more]
A0A5C7GPV7_9ROSI1.340e-2540.63Integrase catalytic domain-containing protein n=3 ... [more]
A0A498M2F0_LABRO2.480e-2540.80Retrovirus-related Pol poly from transposon TNT 1-... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig45119contigH-paniculata_contig45119:1008..1394 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score119.8
Seed ortholog evalue9.5e-25
Seed eggNOG ortholog3659.XP_004149950.1
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004518,GO:0004519,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0097159,GO:1901360,GO:1901363
EggNOG free text desc.Pentatricopeptide repeat-containing protein
EggNOG OGs37K71@33090,3GFIF@35493,4JGHT@91835,COG2801@1,KOG0017@2759,KOG4197@1,KOG4197@2759
COG Functional cat.L
Best tax levelfabids
Best eggNOG OGNA|NA|NA
Exons1
Model size387
Cds size387
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930354.7899663-CDS-H-paniculata_contig45119:1007..13941622930354.7899663-CDS-H-paniculata_contig45119:1007..1394Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45119 1008..1394 -
1691481254.9028382-CDS-H-paniculata_contig45119:1007..13941691481254.9028382-CDS-H-paniculata_contig45119:1007..1394Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45119 1008..1394 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig45119.11353.1prot_H-paniculata_contig45119.11353.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig45119 1008..1394 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig45119.11353.1

>prot_H-paniculata_contig45119.11353.1 ID=prot_H-paniculata_contig45119.11353.1|Name=mRNA_H-paniculata_contig45119.11353.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=129bp
TPQQTSVAERSWRSVLGMTRSKMITANMDRRYWAEATRAAMYCLNRASTR
PHSGGTPYETWHGTAPKLEHLRVFGCTAYVMLQSQQRRKRDDKAWVGVFL
GYDEDNPSYRIYNSENKSVQLSRNVRCD*
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mRNA from alignment at H-paniculata_contig45119:1008..1394-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig45119.11353.1 ID=mRNA_H-paniculata_contig45119.11353.1|Name=mRNA_H-paniculata_contig45119.11353.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=387bp|location=Sequence derived from alignment at H-paniculata_contig45119:1008..1394- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGCCGCAGCAAACTAGTGTGGCGGAGCGCAGCTGGCGTAGCGTTTTGGG GATGACCCGAAGTAAGATGATCACCGCTAACATGGACCGCAGGTATTGGG CGGAGGCGACGCGCGCGGCTATGTACTGCTTAAATCGCGCCTCGACCCGA CCGCACAGCGGAGGGACACCATATGAGACATGGCATGGCACGGCACCAAA GCTTGAACACCTTCGTGTCTTCGGCTGCACGGCGTACGTGATGCTCCAGT CGCAACAGAGACGAAAACGCGACGACAAAGCATGGGTAGGGGTGTTTCTG GGGTACGACGAGGACAACCCGAGTTATCGCATATATAACTCGGAAAACAA GAGCGTCCAGTTGAGCAGGAACGTAAGATGTGATTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig45119:1008..1394-

>mRNA_H-paniculata_contig45119.11353.1 ID=mRNA_H-paniculata_contig45119.11353.1|Name=mRNA_H-paniculata_contig45119.11353.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=774bp|location=Sequence derived from alignment at H-paniculata_contig45119:1008..1394- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGCCGCAGCAAACTAGTGTGGCGGAGCGCAGCTGGCGTAGCGTTTTGGG
GATGACCCGAAGTAAGATGATCACCGCTAACATGGACCGCAGGTATTGGG
CGGAGGCGACGCGCGCGGCTATGTACTGCTTAAATCGCGCCTCGACCCGA
CCGCACAGCGGAGGGACACCATATGAGACATGGCATGGCACGGCACCAAA
GCTTGAACACCTTCGTGTCTTCGGCTGCACGGCGTACGTGATGCTCCAGT
CGCAACAGAGACGAAAACGCGACGACAAAGCATGGGTAGGGGTGTTTCTG
GGGTACGACGAGGACAACCCGAGTTATCGCATATATAACTCGGAAAACAA
GAGCGTCCAGTTGAGCAGGAACGTAAGATGTGATTAAACGCCGCAGCAAA
CTAGTGTGGCGGAGCGCAGCTGGCGTAGCGTTTTGGGGATGACCCGAAGT
AAGATGATCACCGCTAACATGGACCGCAGGTATTGGGCGGAGGCGACGCG
CGCGGCTATGTACTGCTTAAATCGCGCCTCGACCCGACCGCACAGCGGAG
GGACACCATATGAGACATGGCATGGCACGGCACCAAAGCTTGAACACCTT
CGTGTCTTCGGCTGCACGGCGTACGTGATGCTCCAGTCGCAACAGAGACG
AAAACGCGACGACAAAGCATGGGTAGGGGTGTTTCTGGGGTACGACGAGG
ACAACCCGAGTTATCGCATATATAACTCGGAAAACAAGAGCGTCCAGTTG
AGCAGGAACGTAAGATGTGATTAA
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