mRNA_H-paniculata_contig451.11346.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig451.11346.1
Unique NamemRNA_H-paniculata_contig451.11346.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig451.11346.1 vs. uniprot
Match: A0A7S2SU90_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SU90_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 1.020e-20
Identity = 38/58 (65.52%), Postives = 47/58 (81.03%), Query Frame = 1
Query:    1 MSKLRFSVCYCSGEEPEYPADELNAHSPHTRGWQSQQFCDYPQELGLAWDAPARVTQV 174
            MSKL F+V Y SGE+ +YPA ELN HSPHT GWQS +FCD+PQE+GLA   P+R++QV
Sbjct:    1 MSKLSFTVAYSSGEDIDYPARELNVHSPHTVGWQSPRFCDFPQEVGLALSRPSRLSQV 58          
BLAST of mRNA_H-paniculata_contig451.11346.1 vs. uniprot
Match: A0A6U4PS30_HEMAN (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis TaxID=77924 RepID=A0A6U4PS30_HEMAN)

HSP 1 Score: 87.4 bits (215), Expect = 2.080e-19
Identity = 35/57 (61.40%), Postives = 46/57 (80.70%), Query Frame = 1
Query:    4 SKLRFSVCYCSGEEPEYPADELNAHSPHTRGWQSQQFCDYPQELGLAWDAPARVTQV 174
            +KL+F + YCS E+PE+P+ ELNAHSPHT GWQS +FCDYPQELG  + A  R++Q+
Sbjct:    3 AKLKFKLIYCSSEDPEFPSSELNAHSPHTVGWQSARFCDYPQELGFQFGANVRLSQL 59          
BLAST of mRNA_H-paniculata_contig451.11346.1 vs. uniprot
Match: A0A7S0MHU1_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MHU1_9CRYP)

HSP 1 Score: 84.0 bits (206), Expect = 4.940e-18
Identity = 34/57 (59.65%), Postives = 44/57 (77.19%), Query Frame = 1
Query:    4 SKLRFSVCYCSGEEPEYPADELNAHSPHTRGWQSQQFCDYPQELGLAWDAPARVTQV 174
            +KLRF + +CS E+PE+PA ELNAHSPHT GWQS +FC+YPQELG  +    R+ Q+
Sbjct:    3 TKLRFKLVHCSSEDPEFPATELNAHSPHTVGWQSARFCEYPQELGFQFGTTVRLMQL 59          
BLAST of mRNA_H-paniculata_contig451.11346.1 vs. uniprot
Match: L1IUT7_GUITC (UVR domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IUT7_GUITC)

HSP 1 Score: 82.4 bits (202), Expect = 2.200e-17
Identity = 32/57 (56.14%), Postives = 44/57 (77.19%), Query Frame = 1
Query:    4 SKLRFSVCYCSGEEPEYPADELNAHSPHTRGWQSQQFCDYPQELGLAWDAPARVTQV 174
            +KL+F + +CS E+PE+PA ELNAHSPHT GWQS +FCDYPQE+G  + +   + Q+
Sbjct:    3 AKLKFKLVHCSSEDPEFPATELNAHSPHTVGWQSARFCDYPQEIGFQFSSTVHLMQL 59          
BLAST of mRNA_H-paniculata_contig451.11346.1 vs. uniprot
Match: A0A7S0EV58_9CRYP (Hypothetical protein (Fragment) n=3 Tax=Geminigeraceae TaxID=589343 RepID=A0A7S0EV58_9CRYP)

HSP 1 Score: 83.2 bits (204), Expect = 3.090e-17
Identity = 33/57 (57.89%), Postives = 44/57 (77.19%), Query Frame = 1
Query:    4 SKLRFSVCYCSGEEPEYPADELNAHSPHTRGWQSQQFCDYPQELGLAWDAPARVTQV 174
            +KL+F + +CS E+PE+PA ELNAHSPHT GWQS +FCDYPQELG  + +   + Q+
Sbjct:    9 AKLKFKLVHCSSEDPEFPATELNAHSPHTVGWQSARFCDYPQELGFQFSSTVHLMQL 65          
BLAST of mRNA_H-paniculata_contig451.11346.1 vs. uniprot
Match: A0A7S4HB98_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4HB98_GUITH)

HSP 1 Score: 82.4 bits (202), Expect = 5.770e-17
Identity = 32/57 (56.14%), Postives = 44/57 (77.19%), Query Frame = 1
Query:    4 SKLRFSVCYCSGEEPEYPADELNAHSPHTRGWQSQQFCDYPQELGLAWDAPARVTQV 174
            +KL+F + +CS E+PE+PA ELNAHSPHT GWQS +FCDYPQE+G  + +   + Q+
Sbjct:    3 AKLKFKLVHCSSEDPEFPATELNAHSPHTVGWQSARFCDYPQEIGFQFSSTVHLMQL 59          
BLAST of mRNA_H-paniculata_contig451.11346.1 vs. uniprot
Match: A0A1Y1IAN2_KLENI (Galactose-binding domain-like n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IAN2_KLENI)

HSP 1 Score: 82.0 bits (201), Expect = 7.900e-17
Identity = 36/56 (64.29%), Postives = 44/56 (78.57%), Query Frame = 1
Query:    7 KLRFSVCYCSGEEPEYPADELNAHSPHTRGWQSQQFCDYPQELGLAWDAPARVTQV 174
            KLRF+V   SGE+P+YPA ELN HSPHT+GWQS +FC +PQEL L  D PA+V Q+
Sbjct:    8 KLRFTVESASGEDPDYPAKELNFHSPHTKGWQSPRFCKFPQELILQLDKPAQVHQI 63          
BLAST of mRNA_H-paniculata_contig451.11346.1 vs. uniprot
Match: A0A0L0DIE4_THETB (TOG domain-containing protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DIE4_THETB)

HSP 1 Score: 81.6 bits (200), Expect = 1.080e-16
Identity = 33/57 (57.89%), Postives = 46/57 (80.70%), Query Frame = 1
Query:    4 SKLRFSVCYCSGEEPEYPADELNAHSPHTRGWQSQQFCDYPQELGLAWDAPARVTQV 174
            SKL+F+V  CSGE+ E+P  EL  H+PHT+GW+S +FCDYP E+ LA+DAPAR+ ++
Sbjct:    3 SKLKFTVVACSGEDDEHPVVELERHTPHTKGWRSPRFCDYPLEIVLAFDAPARIRKL 59          
BLAST of mRNA_H-paniculata_contig451.11346.1 vs. uniprot
Match: A0A2R5GHB4_9STRA (Centrosomal protein of 104 kDa n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GHB4_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 2.440e-15
Identity = 30/47 (63.83%), Postives = 38/47 (80.85%), Query Frame = 1
Query:    7 KLRFSVCYCSGEEPEYPADELNAHSPHTRGWQSQQFCDYPQELGLAW 147
            +++F V YCSGE+PE+PA ELN HSP T+GWQS  FC YPQE+GL +
Sbjct:   47 QVKFEVVYCSGEDPEFPASELNVHSPQTQGWQSPPFCAYPQEIGLGF 93          
BLAST of mRNA_H-paniculata_contig451.11346.1 vs. uniprot
Match: A0A5A8C7I5_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C7I5_CAFRO)

HSP 1 Score: 75.5 bits (184), Expect = 5.550e-15
Identity = 34/57 (59.65%), Postives = 42/57 (73.68%), Query Frame = 1
Query:    7 KLRFSVCYCSGEEPEYPADELNAHSPHTRGWQSQQFCDYPQELGLAW-DAPARVTQV 174
            KLRF V + SG++PEYPA ELN HSP TRGW S QF ++P ELGL +  AP R+ Q+
Sbjct:    9 KLRFEVAFVSGQDPEYPASELNVHSPETRGWASPQFSEFPVELGLKFLRAPVRMQQL 65          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig451.11346.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2SU90_9STRA1.020e-2065.52Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A6U4PS30_HEMAN2.080e-1961.40Hypothetical protein (Fragment) n=2 Tax=Hemiselmis... [more]
A0A7S0MHU1_9CRYP4.940e-1859.65Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
L1IUT7_GUITC2.200e-1756.14UVR domain-containing protein n=1 Tax=Guillardia t... [more]
A0A7S0EV58_9CRYP3.090e-1757.89Hypothetical protein (Fragment) n=3 Tax=Geminigera... [more]
A0A7S4HB98_GUITH5.770e-1756.14Hypothetical protein n=1 Tax=Guillardia theta TaxI... [more]
A0A1Y1IAN2_KLENI7.900e-1764.29Galactose-binding domain-like n=1 Tax=Klebsormidiu... [more]
A0A0L0DIE4_THETB1.080e-1657.89TOG domain-containing protein n=1 Tax=Thecamonas t... [more]
A0A2R5GHB4_9STRA2.440e-1563.83Centrosomal protein of 104 kDa n=1 Tax=Hondaea fer... [more]
A0A5A8C7I5_CAFRO5.550e-1559.65Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig451contigH-paniculata_contig451:407..772 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score83.2
Seed ortholog evalue4.4e-14
Seed eggNOG ortholog55529.EKX39659
KEGG koko:K06316,ko:K16458
KEGG TC2.A.66.3
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.thienylcyclohexylpiperidine binding
EggNOG OGsKOG4825@1,KOG4825@2759
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000,ko03036
Exons2
Model size174
Cds size174
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930353.6387274-CDS-H-paniculata_contig451:406..5001622930353.6387274-CDS-H-paniculata_contig451:406..500Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig451 407..500 -
1691481254.3196526-CDS-H-paniculata_contig451:406..5001691481254.3196526-CDS-H-paniculata_contig451:406..500Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig451 407..500 -
1622930353.650075-CDS-H-paniculata_contig451:692..7721622930353.650075-CDS-H-paniculata_contig451:692..772Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig451 693..772 -
1691481254.3299325-CDS-H-paniculata_contig451:692..7721691481254.3299325-CDS-H-paniculata_contig451:692..772Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig451 693..772 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig451.11346.1prot_H-paniculata_contig451.11346.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig451 407..772 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig451.11346.1

>prot_H-paniculata_contig451.11346.1 ID=prot_H-paniculata_contig451.11346.1|Name=mRNA_H-paniculata_contig451.11346.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=58bp
MSKLRFSVCYCSGEEPEYPADELNAHSPHTRGWQSQQFCDYPQELGLAWD
APARVTQV
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mRNA from alignment at H-paniculata_contig451:407..772-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig451.11346.1 ID=mRNA_H-paniculata_contig451.11346.1|Name=mRNA_H-paniculata_contig451.11346.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=366bp|location=Sequence derived from alignment at H-paniculata_contig451:407..772- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCCAAGCTAAGATTCTCTGTGTGCTACTGCTCAGGAGAGGAGCCAGA GTATCCTGCGGATGAACTTAATGCACATAGGTGATTAATGATAATCCATT GGTAACAATAAATATGAGTCTAACTTTGCAAGTTCAGCATAGTCAGACCG TCTGTCATATTTGAATATTTTTTGTATCACGTGCTTTGTGTCCAACCTCT CGCAACTACAACTCGACCATTCAGTGACGGTCATTACGTGTCCATCCCTC TCCCATCTTTCTTTATCTACAGTCCTCACACCAGAGGATGGCAGAGCCAG CAGTTCTGTGACTATCCGCAGGAGCTGGGGTTGGCATGGGATGCACCTGC TCGAGTAACACAGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig451:407..772-

>mRNA_H-paniculata_contig451.11346.1 ID=mRNA_H-paniculata_contig451.11346.1|Name=mRNA_H-paniculata_contig451.11346.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=348bp|location=Sequence derived from alignment at H-paniculata_contig451:407..772- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCCAAGCTAAGATTCTCTGTGTGCTACTGCTCAGGAGAGGAGCCAGA
GTATCCTGCGGATGAACTTAATGCACATAGATGTCCAAGCTAAGATTCTC
TGTGTGCTACTGCTCAGGAGAGGAGCCAGAGTATCCTGCGGATGAACTTA
ATGCACATAGTCCTCACACCAGAGGATGGCAGAGCCAGCAGTTCTGTGAC
TATCCGCAGGAGCTGGGGTTGGCATGGGATGCACCTGCTCGAGTAACACA
GGTGTCCTCACACCAGAGGATGGCAGAGCCAGCAGTTCTGTGACTATCCG
CAGGAGCTGGGGTTGGCATGGGATGCACCTGCTCGAGTAACACAGGTG
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