mRNA_H-paniculata_contig45072.11339.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig45072.11339.1
Unique NamemRNA_H-paniculata_contig45072.11339.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig45072.11339.1 vs. uniprot
Match: A0A151ITN2_9HYME (Copia protein n=1 Tax=Trachymyrmex cornetzi TaxID=471704 RepID=A0A151ITN2_9HYME)

HSP 1 Score: 55.1 bits (131), Expect = 6.710e-7
Identity = 27/79 (34.18%), Postives = 48/79 (60.76%), Query Frame = 1 
Query:    4 EIWICDNGATKHMTHNSDFRFSYQEC-DGHVRLADGNRLSIEGVGMLFLQFRFDSEVVLMKLTQVVFIPLLSHHVLSFG 237
            ++WI D+GA++HMTH S++  + Q   D HV L DG +  + G G +++Q   D + +   L  V+++P L+ ++ S G
Sbjct:  286 DVWILDSGASRHMTHRSNWISNLQTYKDEHVSLGDGTKCKVHGRGTVYIQRLVDGQWLDGVLEDVLYVPDLNKNLFSVG 364
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig45072.11339.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A151ITN2_9HYME6.710e-734.18Copia protein n=1 Tax=Trachymyrmex cornetzi TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig45072contigH-paniculata_contig45072:1043..1291 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size249
Cds size249
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930353.147623-CDS-H-paniculata_contig45072:1042..12911622930353.147623-CDS-H-paniculata_contig45072:1042..1291Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45072 1043..1291 +
1691481254.1255767-CDS-H-paniculata_contig45072:1042..12911691481254.1255767-CDS-H-paniculata_contig45072:1042..1291Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45072 1043..1291 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig45072.11339.1prot_H-paniculata_contig45072.11339.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig45072 1043..1291 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig45072.11339.1

>prot_H-paniculata_contig45072.11339.1 ID=prot_H-paniculata_contig45072.11339.1|Name=mRNA_H-paniculata_contig45072.11339.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=83bp
MEIWICDNGATKHMTHNSDFRFSYQECDGHVRLADGNRLSIEGVGMLFLQ
FRFDSEVVLMKLTQVVFIPLLSHHVLSFGKFAD
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mRNA from alignment at H-paniculata_contig45072:1043..1291+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig45072.11339.1 ID=mRNA_H-paniculata_contig45072.11339.1|Name=mRNA_H-paniculata_contig45072.11339.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=249bp|location=Sequence derived from alignment at H-paniculata_contig45072:1043..1291+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGATCTGGATTTGTGATAATGGTGCAACGAAACACATGACCCATAA
TTCAGATTTTCGTTTTAGTTACCAGGAATGTGATGGGCATGTACGCCTTG
CAGATGGTAACCGTCTCTCGATCGAAGGAGTTGGCATGCTGTTCCTTCAA
TTTCGATTTGACTCCGAGGTTGTTTTGATGAAGTTAACTCAGGTTGTGTT
CATACCACTCCTCAGTCATCACGTTCTATCTTTCGGGAAATTCGCGGAC
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Coding sequence (CDS) from alignment at H-paniculata_contig45072:1043..1291+

>mRNA_H-paniculata_contig45072.11339.1 ID=mRNA_H-paniculata_contig45072.11339.1|Name=mRNA_H-paniculata_contig45072.11339.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=498bp|location=Sequence derived from alignment at H-paniculata_contig45072:1043..1291+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGATCTGGATTTGTGATAATGGTGCAACGAAACACATGACCCATAA
TTCAGATTTTCGTTTTAGTTACCAGGAATGTGATGGGCATGTACGCCTTG
CAGATGGTAACCGTCTCTCGATCGAAGGAGTTGGCATGCTGTTCCTTCAA
TTTCGATTTGACTCCGAGGTTGTTTTGATGAAGTTAACTCAGGTTGTGTT
CATACCACTCCTCAGTCATCACGTTCTATCTTTCGGGAAATTCGCGGACA
TGGAGATCTGGATTTGTGATAATGGTGCAACGAAACACATGACCCATAAT
TCAGATTTTCGTTTTAGTTACCAGGAATGTGATGGGCATGTACGCCTTGC
AGATGGTAACCGTCTCTCGATCGAAGGAGTTGGCATGCTGTTCCTTCAAT
TTCGATTTGACTCCGAGGTTGTTTTGATGAAGTTAACTCAGGTTGTGTTC
ATACCACTCCTCAGTCATCACGTTCTATCTTTCGGGAAATTCGCGGAC
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